AT4G22750

DHHC palmitoyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006531
Physical Location & Seq
Reverse (-)
11949180 .. 11951424
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22750.1

Sequence Viewer

Length: 909 bp
ATGGCGTGGAACGTGTTCAAGTTCTGCACAGCACTTCGCGCCTTGGGTTCGATCATGATCTTAATTGTTATCGGGATCATCGGATTCACATACTACGCCGTTGTCGTCGTTAATTACGGACCTGCTCTACTGATCGGTGGTGTCGATTCATTACTATCTGTTCTCGTCTTAGCGTTCTTCCACTTTCTGCTTATAATGCTACTGTGGAGTTATTTCTCTGTTGTTGTGACGGACCCTGGTGGTGTTCCAACGGGTTGGAGGCCAGAATTAGACATAGAGAAAAGCGAGGGAAACCAAGCTTTGATTGGAGAAGCTTCGGTTGGAGATTCCTCGTCTCATGGTGTAAGATATTGTAGAAAGTGCAATCAATATAAACCGCCTCGTTCTCACCATTGTTCAGTCTGTGGAAGATGCATACTAAAGATGGACCATCACTGTGTTTGGGTGGTGAATTGTGTTGGTGCAAATAACTACAAATCATTTCTCCTATTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAGTATCACTATTGCCAATTTTCCTCGTATTCTTCAGCGATGGAGATGGTGATATAACCGTATCACCAGGAAGCCTAGCAGCCAGCTTTGTTGCATTTGTATTGAACATAGCATTTGCCCTAAGTGTCCTAGGCTTCCTAATAATGCACATAATGTTGGTCGCTCGTAACACCACAACTATTGAGGCGTATGAGAAGCATACAGTGAACTGGCCATACAACGTTGGTCGTAAGACAAACTTTGAACAGGTTTTTGGAAGTGATAAAATGTATTGGTTCGTGCCATTGTACACGGAAGACGATAAGAAGAAGTTGCCAGCACTTGGAGGGTTAGACTTTACGAGCAGGTCGGAGTCCGAGACAGAGCCGCTTCAGTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

302

Amino Acids

33.55

Weight (kDa)

6.23

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 115 - 241 9.5e-40 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
Acc36I ACCTGC 2 cut(s) 130, 861
AccB7I CCANNNNNTGG 1 cut(s) 848
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 377, 893
AclI AACGTT 1 cut(s) 747
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 737
AcuI CTGAAG 2 cut(s) 544, 881
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 3 cut(s) 19, 631, 770
AjnI CCWGG 2 cut(s) 235, 592
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 762, 794
AluBI AGCT 3 cut(s) 299, 314, 612
AluI AGCT 3 cut(s) 299, 314, 612
Alw26I GTCTC 3 cut(s) 339, 506, 878
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 260, 737
ApeKI GCWGC 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 14
AspA2I CCTAGG 1 cut(s) 655
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 119, 232, 427
AsuHPI GGTGA 4 cut(s) 380, 460, 582, 587
AvaII GGWCC 3 cut(s) 119, 232, 427
AvrII CCTAGG 1 cut(s) 655
BalI TGGCCA 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 828
BbvI GCAGC 1 cut(s) 617
BccI CCATC 4 cut(s) 418, 438, 560, 566
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 237, 594
BcoDI GTCTC 3 cut(s) 339, 506, 878
BfaI CTAG 2 cut(s) 602, 656
BfuAI ACCTGC 2 cut(s) 130, 861
BisI GCNGC 2 cut(s) 606, 893
BlnI CCTAGG 1 cut(s) 655
BlsI GCNGC 2 cut(s) 607, 894
Bme1390I CCNGG 2 cut(s) 237, 594
Bme18I GGWCC 3 cut(s) 119, 232, 427
BmgT120I GGNCC 3 cut(s) 119, 232, 427
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 237, 594
BmsI GCATC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 42, 235, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse1I ACTGG 1 cut(s) 740
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 2 cut(s) 237, 594
BseDI CCNNGG 3 cut(s) 42, 235, 655
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 740
BseXI GCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 262, 739
BslI CCNNNNNNNGG 1 cut(s) 848
BsmAI GTCTC 3 cut(s) 339, 506, 878
BsmBI CGTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 262, 739
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 4 cut(s) 51, 57, 75, 132
BspACI CCGC 2 cut(s) 377, 893
BspANI GGCC 2 cut(s) 262, 739
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 234
BspMI ACCTGC 2 cut(s) 130, 861
BspPI GGATC 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 42, 235, 655
BssMI GATC 4 cut(s) 51, 57, 75, 132
BssT1I CCWWGG 2 cut(s) 42, 655
Bst2UI CCWGG 2 cut(s) 237, 594
Bst4CI ACNGT 5 cut(s) 204, 437, 520, 586, 730
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 2 cut(s) 610, 843
BstDEI CTNAG 2 cut(s) 169, 647
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 4 cut(s) 54, 60, 78, 135
BstMAI GTCTC 3 cut(s) 339, 506, 878
BstMBI GATC 4 cut(s) 51, 57, 75, 132
BstMWI GCNNNNNNNGC 2 cut(s) 38, 196
BstNI CCWGG 2 cut(s) 237, 594
BstSCI CCNGG 2 cut(s) 235, 592
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 617
BstV2I GAAGAC 1 cut(s) 828
BstXI CCANNNNNNTGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 262, 739
BtgZI GCGATG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 433, 735
BveI ACCTGC 2 cut(s) 130, 861
Cac8I GCNNGC 2 cut(s) 610, 843
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 119, 232, 427
Csp6I GTAC 1 cut(s) 814
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviAII CATG 2 cut(s) 55, 338
CviJI RGCY 9 cut(s) 262, 299, 314, 600, 608, 612, 660, 739, 892
CviKI_1 RGCY 9 cut(s) 262, 299, 314, 600, 608, 612, 660, 739, 892
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 2 cut(s) 169, 647
DpnI GATC 4 cut(s) 53, 59, 77, 134
DpnII GATC 4 cut(s) 51, 57, 75, 132
EaeI YGGCCR 1 cut(s) 737
Eco130I CCWWGG 2 cut(s) 42, 655
Eco47I GGWCC 3 cut(s) 119, 232, 427
Eco57I CTGAAG 2 cut(s) 544, 881
EcoRII CCWGG 2 cut(s) 235, 592
EcoT14I CCWWGG 2 cut(s) 42, 655
EcoT22I ATGCAT 1 cut(s) 416
ErhI CCWWGG 2 cut(s) 42, 655
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 58, 341
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FatI CATG 2 cut(s) 54, 337
Fnu4HI GCNGC 2 cut(s) 606, 893
Fsp4HI GCNGC 2 cut(s) 606, 893
FspBI CTAG 2 cut(s) 602, 656
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 606, 893
HaeIII GGCC 2 cut(s) 262, 739
HhaI GCGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 58, 341
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 297, 312
HinfI GANTC 4 cut(s) 84, 146, 326, 878
HphI GGTGA 4 cut(s) 380, 460, 582, 587
Hpy166II GTNNAC 2 cut(s) 733, 816
Hpy188I TCNGA 3 cut(s) 83, 877, 883
Hpy188III TCNNGA 3 cut(s) 55, 73, 509
Hpy8I GTNNAC 2 cut(s) 733, 816
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 5 cut(s) 204, 437, 520, 586, 730
HpyCH4IV ACGT 2 cut(s) 12, 747
HpyCH4V TGCA 7 cut(s) 27, 363, 414, 464, 527, 620, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 196
HpyF3I CTNAG 2 cut(s) 169, 647
HpySE526I ACGT 2 cut(s) 12, 747
Hsp92II CATG 2 cut(s) 58, 341
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 4 cut(s) 51, 57, 75, 132
Lsp1109I GCAGC 1 cut(s) 617
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 602, 656
MaeII ACGT 2 cut(s) 12, 747
MaeIII GTNAC 2 cut(s) 226, 692
MalI GATC 4 cut(s) 53, 59, 77, 134
MboI GATC 4 cut(s) 51, 57, 75, 132
MboII GAAGA 5 cut(s) 169, 420, 550, 833, 844
MlsI TGGCCA 1 cut(s) 739
MluCI AATT 5 cut(s) 63, 112, 266, 451, 543
MluNI TGGCCA 1 cut(s) 739
MlyI GAGTC 1 cut(s) 887
MmeI TCCRAC 4 cut(s) 236, 272, 301, 855
MnlI CCTC 7 cut(s) 252, 280, 340, 390, 560, 703, 845
Mox20I TGGCCA 1 cut(s) 739
Mph1103I ATGCAT 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 739
MseI TTAA 2 cut(s) 62, 111
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 739
MspR9I CCNGG 2 cut(s) 237, 594
MvaI CCWGG 2 cut(s) 237, 594
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 38, 196
NdeII GATC 4 cut(s) 51, 57, 75, 132
NlaIII CATG 2 cut(s) 58, 341
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 416
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 141
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 84, 146, 326
PflMI CCANNNNNTGG 1 cut(s) 848
PkrI GCNGC 2 cut(s) 607, 894
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PsiI TTATAA 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 235, 592
PspGI CCWGG 2 cut(s) 235, 592
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 3 cut(s) 119, 232, 427
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 2 cut(s) 62, 111
SatI GCNGC 2 cut(s) 606, 893
Sau3AI GATC 4 cut(s) 51, 57, 75, 132
Sau96I GGNCC 3 cut(s) 119, 232, 427
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 2 cut(s) 237, 594
SetI ASST 8 cut(s) 15, 124, 301, 316, 614, 750, 777, 875
SfaNI GCATC 1 cut(s) 401
SinI GGWCC 3 cut(s) 119, 232, 427
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 5 cut(s) 63, 112, 266, 451, 543
SsiI CCGC 2 cut(s) 377, 893
SspMI CTAG 2 cut(s) 602, 656
StyD4I CCNGG 2 cut(s) 235, 592
StyI CCWWGG 2 cut(s) 42, 655
TaaI ACNGT 5 cut(s) 204, 437, 520, 586, 730
TaiI ACGT 2 cut(s) 15, 750
TaqI TCGA 2 cut(s) 50, 144
TasI AATT 5 cut(s) 63, 112, 266, 451, 543
TatI WGTACW 1 cut(s) 813
TauI GCSGC 1 cut(s) 895
TfiI GAWTC 3 cut(s) 84, 146, 326
Tru1I TTAA 2 cut(s) 62, 111
Tru9I TTAA 2 cut(s) 62, 111
TscAI CASTG 2 cut(s) 440, 735
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 3 cut(s) 132, 245, 833
TspRI CASTG 2 cut(s) 440, 735
Van91I CCANNNNNTGG 1 cut(s) 848
VpaK11BI GGWCC 3 cut(s) 119, 232, 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 655
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 602, 656
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.