Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017656.1

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Reverse (-)

16151 .. 22020

Gene Structure 5870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017656.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgccagcaggaatggcgtggaacgcgttcaagctctgcacggcgctgcgagccctcggctacataatggtcctgatcgttgtcggcatagtcggcctcacctactacgccgtcgttttgctcaattacttaccggcgcttctccgaggaggcgtcgacgcccttattgctttcccgctcttgattttgttccactttctgttggtgatgctgttgtggagctactcttatgttgttctaacggatcctgggggtattccaccgaattggaggcctgaaattgatgaggagggaggccagggagccccattggtggaatcagaatacagtggtgcaggtctagtatccaaccaatctgtcattgcttttgaccctgcaaatcaaaaagtacgtttctgtcggaagtgcaaccactataaacctcctcgttgtcatcattgttctgtttgtgggaggtgtattttgaaaatggaccatcattgtgtgtgggtggtcaactgtattggagcattgaattacaagtacttccttcttttcttgttttacacatttcttgagacaactcttgtcgcattatcattattgagatatttcatggcattttttaccgatgaagagatatctggaacactgggaactgttgcagccagttttatcacattcgttttgaatttagcatttgcgttgagcattttgggctttatgctcatgcacctatcattggtggcatccaataccaccacaattgaggcatatgagaagaaaagtactcccaaatggcattatgaccttggtcgaaagaaaaactttgaacaggtgtttgggacggataagtggtattggttcattcctgcatattcagaggaggatttaagacggataccagctcttcaggggattgattacccaacaaggcctgagttgcatgcactccagcagattgacagaagcagggataagctattagatgagagccaacttgataaaagattggatcctaagttgaaagacaagatgcagaacctatacaactatcttactgcgtcaaaggaaatgagtacatctgagctgttgcacaatattcttttcaagagtggcacatttgacgacaatatctataatatggacattgagtttgaggtgctgctcttccttgcccctcactggatgtcaagattcatgagaagtaatgacactatttacaggtttaacaaacagaaaactgaagcattgaaagcagacattgtcaacaggcgaatggatctgataactgagagcaaaggacaaccaggggagcttctaggaagcaaaactattcatcagttggtagaactaagacaattttttgtcaggaaggaacaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

455

Amino Acids

52.27

Weight (kDa)

7.59

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	5 cut(s)	239, 252, 989, 1002, 1269
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	2 cut(s)	875, 1245
AcyI	GRCGYC	2 cut(s)	153, 159
AfaI	GTAC	4 cut(s)	390, 524, 769, 1060
AfiI	CCNNNNNNNGG	3 cut(s)	313, 721, 1164
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	8 cut(s)	31, 466, 514, 670, 812, 1006, 1090, 1234
AjnI	CCWGG	3 cut(s)	247, 297, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	6 cut(s)	34, 222, 887, 961, 1069, 1297
AluI	AGCT	6 cut(s)	34, 222, 887, 961, 1069, 1297
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	5 cut(s)	239, 252, 989, 1002, 1269
AoxI	GGCC	4 cut(s)	94, 272, 295, 914
ApeKI	GCWGC	3 cut(s)	46, 644, 1144
ApoI	RAATTY	1 cut(s)	670
ArsI	GACNNNNNNTTYG	2 cut(s)	1118, 1150
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	46, 139
AspS9I	GGNCC	2 cut(s)	70, 472
AsuHPI	GGTGA	2 cut(s)	91, 217
AvaII	GGWCC	2 cut(s)	70, 472
BamHI	GGATCC	2 cut(s)	244, 994
BanII	GRGCYC	2 cut(s)	55, 307
BbvI	GCAGC	3 cut(s)	33, 656, 1131
BccI	CCATC	1 cut(s)	483
BceAI	ACGGC	2 cut(s)	57, 95
BciT130I	CCWGG	3 cut(s)	249, 299, 1290
BciVI	GTATCC	2 cut(s)	355, 873
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	341, 1301
BfoI	RGCGCY	2 cut(s)	47, 140
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	2 cut(s)	355, 873
BisI	GCNGC	3 cut(s)	47, 645, 1145
BlsI	GCNGC	3 cut(s)	48, 646, 1146
BmcAI	AGTACT	2 cut(s)	524, 769
Bme1390I	CCNGG	3 cut(s)	249, 299, 1290
Bme18I	GGWCC	2 cut(s)	70, 472
BmgT120I	GGNCC	2 cut(s)	70, 472
BmiI	GGNNCC	3 cut(s)	246, 304, 996
BmrFI	CCNGG	3 cut(s)	249, 299, 1290
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	3 cut(s)	198, 737, 1005
BmuI	ACTGGG	1 cut(s)	641
BoxI	GACNNNNGTC	1 cut(s)	792
BpmI	CTGGAG	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	153, 159
BsaJI	CCNNGG	6 cut(s)	55, 145, 248, 298, 790, 1289
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 721, 1164
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	636, 648, 1169
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	3 cut(s)	249, 299, 1290
BseDI	CCNNGG	6 cut(s)	55, 145, 248, 298, 790, 1289
BseGI	GGATG	2 cut(s)	728, 1173
BseLI	CCNNNNNNNGG	3 cut(s)	313, 721, 1164
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	909, 1056, 1263
BseNI	ACTGG	3 cut(s)	636, 648, 1169
BseRI	GAGGAG	4 cut(s)	162, 302, 414, 878
BseXI	GCAGC	3 cut(s)	33, 656, 1131
BsgI	GTGCAG	2 cut(s)	22, 354
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	96, 274, 297, 916
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	3 cut(s)	313, 721, 1164
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	838
BsnI	GGCC	4 cut(s)	96, 274, 297, 916
Bsp1286I	GDGCHC	2 cut(s)	55, 307
Bsp143I	GATC	4 cut(s)	75, 244, 994, 1261
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	96, 274, 297, 916
BspCNI	CTCAG	3 cut(s)	910, 1057, 1264
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	1179
BspLI	GGNNCC	3 cut(s)	246, 304, 996
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	5 cut(s)	239, 252, 989, 1002, 1269
BspQI	GCTCTTC	2 cut(s)	894, 1154
BsrBI	CCGCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	636, 648, 1169
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	55, 145, 248, 298, 790, 1289
BssMI	GATC	4 cut(s)	75, 244, 994, 1261
BssNI	GRCGYC	2 cut(s)	153, 159
BssT1I	CCWWGG	1 cut(s)	790
Bst2UI	CCWGG	3 cut(s)	249, 299, 1290
Bst4CI	ACNGT	3 cut(s)	329, 500, 640
Bst6I	CTCTTC	3 cut(s)	609, 894, 1154
BstACI	GRCGYC	2 cut(s)	153, 159
BstC8I	GCNNGC	3 cut(s)	6, 51, 927
BstDEI	CTNAG	5 cut(s)	918, 999, 1065, 1272, 1334
BstF5I	GGATG	2 cut(s)	728, 1173
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	2 cut(s)	47, 140
BstHHI	GCGC	2 cut(s)	46, 139
BstKTI	GATC	4 cut(s)	78, 247, 997, 1264
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	4 cut(s)	75, 244, 994, 1261
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 23, 50, 93, 167, 696, 922, 1235
BstNI	CCWGG	3 cut(s)	249, 299, 1290
BstNSI	RCATGY	1 cut(s)	929
BstPAI	GACNNNNGTC	1 cut(s)	792
BstSCI	CCNGG	3 cut(s)	247, 297, 1288
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	33, 656, 1131
BstX2I	RGATCY	3 cut(s)	244, 994, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	3 cut(s)	244, 994, 1261
BsuI	GTATCC	2 cut(s)	355, 873
BsuRI	GGCC	4 cut(s)	96, 274, 297, 916
BtsCI	GGATG	2 cut(s)	728, 1173
BtsIMutI	CAGTG	3 cut(s)	334, 629, 1162
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	6, 51, 927
CciI	TCATGA	1 cut(s)	1179
CfoI	GCGC	2 cut(s)	46, 139
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	70, 472
CseI	GACGC	3 cut(s)	142, 167, 1032
Csp6I	GTAC	4 cut(s)	389, 523, 768, 1059
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	4 cut(s)	595, 709, 926, 1180
CviQI	GTAC	4 cut(s)	389, 523, 768, 1059
DdeI	CTNAG	5 cut(s)	918, 999, 1065, 1272, 1334
DpnI	GATC	4 cut(s)	77, 246, 996, 1263
DpnII	GATC	4 cut(s)	75, 244, 994, 1261
Eam1104I	CTCTTC	3 cut(s)	609, 894, 1154
EarI	CTCTTC	3 cut(s)	609, 894, 1154
Eco130I	CCWWGG	1 cut(s)	790
Eco147I	AGGCCT	2 cut(s)	274, 916
Eco24I	GRGCYC	2 cut(s)	55, 307
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	70, 472
Eco57I	CTGAAG	2 cut(s)	875, 1245
EcoRII	CCWGG	3 cut(s)	247, 297, 1288
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	790
EcoT38I	GRGCYC	2 cut(s)	55, 307
ErhI	CCWWGG	1 cut(s)	790
FaeI	CATG	4 cut(s)	598, 712, 929, 1183
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	4 cut(s)	594, 708, 925, 1179
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	47, 645, 1145
FokI	GGATG	2 cut(s)	715, 1180
FriOI	GRGCYC	2 cut(s)	55, 307
Fsp4HI	GCNGC	3 cut(s)	47, 645, 1145
FspBI	CTAG	2 cut(s)	341, 1301
GlaI	GCGC	2 cut(s)	45, 138
GluI	GCNGC	3 cut(s)	47, 645, 1145
GsuI	CTGGAG	1 cut(s)	917
HaeII	RGCGCY	2 cut(s)	47, 140
HaeIII	GGCC	4 cut(s)	96, 274, 297, 916
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	3 cut(s)	142, 167, 1032
HhaI	GCGC	2 cut(s)	46, 139
Hin1I	GRCGYC	2 cut(s)	153, 159
Hin1II	CATG	4 cut(s)	598, 712, 929, 1183
Hin6I	GCGC	2 cut(s)	44, 137
HinP1I	GCGC	2 cut(s)	44, 137
HincII	GTYRAC	3 cut(s)	157, 496, 1249
HindII	GTYRAC	3 cut(s)	157, 496, 1249
HinfI	GANTC	2 cut(s)	317, 1176
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	91, 217
Hpy166II	GTNNAC	3 cut(s)	157, 496, 1249
Hpy188I	TCNGA	6 cut(s)	146, 322, 402, 862, 1066, 1266
Hpy188III	TCNNGA	8 cut(s)	73, 181, 554, 624, 1090, 1173, 1180, 1351
Hpy8I	GTNNAC	3 cut(s)	157, 496, 1249
Hpy99I	CGWCG	3 cut(s)	116, 158, 161
HpyAV	CCTTC	2 cut(s)	539, 1348
HpyCH4III	ACNGT	3 cut(s)	329, 500, 640
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 23, 50, 93, 167, 696, 922, 1235
HpyF3I	CTNAG	5 cut(s)	918, 999, 1065, 1272, 1334
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	2 cut(s)	153, 159
Hsp92II	CATG	4 cut(s)	598, 712, 929, 1183
HspAI	GCGC	2 cut(s)	44, 137
Kzo9I	GATC	4 cut(s)	75, 244, 994, 1261
LguI	GCTCTTC	2 cut(s)	894, 1154
LmnI	GCTCC	4 cut(s)	219, 302, 506, 1294
Lsp1109I	GCAGC	3 cut(s)	33, 656, 1131
LweI	GCATC	3 cut(s)	198, 737, 1005
MaeI	CTAG	2 cut(s)	341, 1301
MaeII	ACGT	1 cut(s)	391
MalI	GATC	4 cut(s)	77, 246, 996, 1263
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	4 cut(s)	75, 244, 994, 1261
MboII	GAAGA	4 cut(s)	626, 772, 881, 1141
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	3 cut(s)	244, 994, 1261
MhlI	GDGCHC	2 cut(s)	55, 307
MluCI	AATT	7 cut(s)	124, 265, 279, 514, 670, 744, 1340
MluI	ACGCGT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	372, 380
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	872, 1209
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	3 cut(s)	249, 299, 1290
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	3 cut(s)	249, 299, 1290
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	8 cut(s)	14, 23, 50, 93, 167, 696, 922, 1235
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	4 cut(s)	75, 244, 994, 1261
NlaIII	CATG	4 cut(s)	598, 712, 929, 1183
NlaIV	GGNNCC	3 cut(s)	246, 304, 996
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	929
PaeI	GCATGC	1 cut(s)	929
PagI	TCATGA	1 cut(s)	1179
PceI	AGGCCT	2 cut(s)	274, 916
PciSI	GCTCTTC	2 cut(s)	894, 1154
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	317, 1176
PflFI	GACNNNGTC	1 cut(s)	1244
PkrI	GCNGC	3 cut(s)	48, 646, 1146
PshAI	GACNNNNGTC	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	247, 297, 1288
PspGI	CCWGG	3 cut(s)	247, 297, 1288
PspN4I	GGNNCC	3 cut(s)	246, 304, 996
PspPI	GGNCC	2 cut(s)	70, 472
PsuI	RGATCY	3 cut(s)	244, 994, 1261
PsyI	GACNNNGTC	1 cut(s)	1244
RsaI	GTAC	4 cut(s)	390, 524, 769, 1060
RsaNI	GTAC	4 cut(s)	389, 523, 768, 1059
RseI	CAYNNNNRTG	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	2 cut(s)	894, 1154
SaqAI	TTAA	2 cut(s)	872, 1209
SatI	GCNGC	3 cut(s)	47, 645, 1145
Sau3AI	GATC	4 cut(s)	75, 244, 994, 1261
Sau96I	GGNCC	2 cut(s)	70, 472
ScaI	AGTACT	2 cut(s)	524, 769
ScrFI	CCNGG	3 cut(s)	249, 299, 1290
SduI	GDGCHC	2 cut(s)	55, 307
SfaNI	GCATC	3 cut(s)	198, 737, 1005
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	70, 472
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	7 cut(s)	124, 265, 279, 514, 670, 744, 1340
SseBI	AGGCCT	2 cut(s)	274, 916
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	2 cut(s)	341, 1301
StuI	AGGCCT	2 cut(s)	274, 916
StyD4I	CCNGG	3 cut(s)	247, 297, 1288
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	3 cut(s)	329, 500, 640
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	156, 796
TasI	AATT	7 cut(s)	124, 265, 279, 514, 670, 744, 1340
TatI	WGTACW	3 cut(s)	522, 767, 1058
TfiI	GAWTC	2 cut(s)	317, 1176
Tru1I	TTAA	2 cut(s)	872, 1209
Tru9I	TTAA	2 cut(s)	872, 1209
TscAI	CASTG	3 cut(s)	334, 636, 1169
TseI	GCWGC	3 cut(s)	46, 644, 1144
TspDTI	ATGAA	5 cut(s)	583, 627, 835, 1168, 1307
TspGWI	ACGGA	3 cut(s)	257, 842, 892
TspRI	CASTG	3 cut(s)	334, 636, 1169
Tth111I	GACNNNGTC	1 cut(s)	1244
VpaK11BI	GGWCC	2 cut(s)	70, 472
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	341, 1301
ZrmI	AGTACT	2 cut(s)	524, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.