Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Reverse (-)

49497519 .. 49500848

Gene Structure 3330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTCGGCTACATAATGGTCCTGATCGTTGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGATGCCCTTATCGCTTTCCCGCTCTTGATTTTGTTCCACTTTCTGTTGGTGATGCTGTTGTGGAGCTACTTTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACCGAATTGGAGGCCTGAAATCGATGAGGAGGGAGGCCAGGGAGCCCCATTGGTGGAATCAGAATACAGTGGTGCAGGTCTAGTATCGAACCAATCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCACCTCGCTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTAAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCGCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACGCTGGGAACTGTTGCAGCCAGTTTTATCACATTTGTTTTGAATTTAGCATTTGCATTGAGCGTTTTGGGATTTATGCTCATGCACCTATCATTGGTGGCATCCAATACCACCACAATTGAGGCATATGAGAAGAAAAATACTCCCAAATGGCATTATGACCTTGGTCGAAAGAAAAACTTTGAACAGGTGTTTGGGACGGATAAGTGGTATTGGTTCATTCCTGCATATTCAGAGGAGGATTTAAGACGGATACCTGCTCTTCAGGGGATTGATTACCCAACAAGGCCTGAGTTGCATGCACTCCAGCAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

310

Amino Acids

35.26

Weight (kDa)

7.09

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	125 - 250	3e-39	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	931
Acc36I	ACCTGC	2 cut(s)	314, 880
AccBSI	CCGCTC	1 cut(s)	166
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	227, 240
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	863
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	378, 512
AfiI	CCNNNNNNNGG	2 cut(s)	301, 709
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	19, 454, 502, 658, 800
AjnI	CCWGG	2 cut(s)	235, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	2 cut(s)	22, 210
AluI	AGCT	2 cut(s)	22, 210
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	4 cut(s)	82, 260, 283, 902
ApeKI	GCWGC	2 cut(s)	34, 632
ApoI	RAATTY	1 cut(s)	658
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	34, 127
AspS9I	GGNCC	2 cut(s)	58, 460
AsuHPI	GGTGA	2 cut(s)	79, 205
AvaII	GGWCC	2 cut(s)	58, 460
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	43, 295
BbvI	GCAGC	2 cut(s)	21, 644
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	2 cut(s)	45, 83
BciT130I	CCWGG	2 cut(s)	237, 287
BciVI	GTATCC	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	329
BfoI	RGCGCY	2 cut(s)	35, 128
BfuAI	ACCTGC	2 cut(s)	314, 880
BfuI	GTATCC	1 cut(s)	861
BisI	GCNGC	2 cut(s)	35, 633
BlsI	GCNGC	2 cut(s)	36, 634
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	237, 287
Bme18I	GGWCC	2 cut(s)	58, 460
BmgT120I	GGNCC	2 cut(s)	58, 460
BmiI	GGNNCC	2 cut(s)	234, 292
BmrFI	CCNGG	2 cut(s)	237, 287
BmsI	GCATC	3 cut(s)	136, 186, 725
BoxI	GACNNNNGTC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	43, 133, 236, 286, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 709
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	237, 287
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	43, 133, 236, 286, 778
BseGI	GGATG	1 cut(s)	716
BseLI	CCNNNNNNNGG	2 cut(s)	301, 709
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	3 cut(s)	150, 290, 866
BseXI	GCAGC	2 cut(s)	21, 644
BseYI	CCCAGC	2 cut(s)	361, 619
BsgI	GTGCAG	2 cut(s)	10, 342
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	4 cut(s)	84, 262, 285, 904
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	2 cut(s)	301, 709
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	4 cut(s)	84, 262, 285, 904
Bsp1286I	GDGCHC	2 cut(s)	43, 295
Bsp143I	GATC	2 cut(s)	63, 232
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	4 cut(s)	84, 262, 285, 904
BspCNI	CTCAG	1 cut(s)	898
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	234, 292
BspMI	ACCTGC	2 cut(s)	314, 880
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	882
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	5 cut(s)	43, 133, 236, 286, 778
BssMI	GATC	2 cut(s)	63, 232
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	778
Bst2UI	CCWGG	2 cut(s)	237, 287
Bst4CI	ACNGT	3 cut(s)	317, 488, 628
Bst6I	CTCTTC	2 cut(s)	597, 882
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	39, 915
BstDEI	CTNAG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	716
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	35, 128
BstHHI	GCGC	2 cut(s)	34, 127
BstKTI	GATC	2 cut(s)	66, 235
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	63, 232
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 38, 81, 155, 910
BstNI	CCWGG	2 cut(s)	237, 287
BstNSI	RCATGY	1 cut(s)	917
BstPAI	GACNNNNGTC	1 cut(s)	780
BstSCI	CCNGG	2 cut(s)	235, 285
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	21, 644
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	84, 262, 285, 904
BsuTUI	ATCGAT	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	716
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	2 cut(s)	314, 880
Cac8I	GCNNGC	2 cut(s)	39, 915
CfoI	GCGC	2 cut(s)	34, 127
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	58, 460
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	377, 511
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	4 cut(s)	349, 583, 697, 914
CviQI	GTAC	2 cut(s)	377, 511
DdeI	CTNAG	1 cut(s)	906
DpnI	GATC	2 cut(s)	65, 234
DpnII	GATC	2 cut(s)	63, 232
Eam1104I	CTCTTC	2 cut(s)	597, 882
EarI	CTCTTC	2 cut(s)	597, 882
Eco130I	CCWWGG	1 cut(s)	778
Eco147I	AGGCCT	2 cut(s)	262, 904
Eco24I	GRGCYC	2 cut(s)	43, 295
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	58, 460
Eco57I	CTGAAG	1 cut(s)	863
EcoRII	CCWGG	2 cut(s)	235, 285
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	2 cut(s)	43, 295
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	4 cut(s)	352, 586, 700, 917
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	4 cut(s)	348, 582, 696, 913
FauI	CCCGC	1 cut(s)	171
FauNDI	CATATG	1 cut(s)	742
Fnu4HI	GCNGC	2 cut(s)	35, 633
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	2 cut(s)	43, 295
Fsp4HI	GCNGC	2 cut(s)	35, 633
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	2 cut(s)	33, 126
GluI	GCNGC	2 cut(s)	35, 633
GsaI	CCCAGC	2 cut(s)	365, 623
GsuI	CTGGAG	1 cut(s)	905
HaeII	RGCGCY	2 cut(s)	35, 128
HaeIII	GGCC	4 cut(s)	84, 262, 285, 904
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	34, 127
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	352, 586, 700, 917
Hin6I	GCGC	2 cut(s)	32, 125
HinP1I	GCGC	2 cut(s)	32, 125
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	79, 205
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	134, 310, 390, 850
Hpy188III	TCNNGA	4 cut(s)	61, 169, 542, 612
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	104, 146
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	317, 488, 628
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	9 cut(s)	27, 323, 396, 632, 671, 700, 842, 913, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 38, 81, 155, 910
HpyF3I	CTNAG	1 cut(s)	906
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	352, 586, 700, 917
HspAI	GCGC	2 cut(s)	32, 125
Kzo9I	GATC	2 cut(s)	63, 232
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	3 cut(s)	207, 290, 494
Lsp1109I	GCAGC	2 cut(s)	21, 644
LweI	GCATC	3 cut(s)	136, 186, 725
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	379
MalI	GATC	2 cut(s)	65, 234
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	63, 232
MboII	GAAGA	3 cut(s)	614, 760, 869
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	43, 295
MluCI	AATT	5 cut(s)	112, 253, 502, 658, 732
MluI	ACGCGT	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	860
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	237, 287
MunI	CAATTG	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	237, 287
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	5 cut(s)	11, 38, 81, 155, 910
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	63, 232
NlaIII	CATG	4 cut(s)	352, 586, 700, 917
NlaIV	GGNNCC	2 cut(s)	234, 292
NmeAIII	GCCGAG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	917
PceI	AGGCCT	2 cut(s)	262, 904
PciSI	GCTCTTC	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	36, 634
PshAI	GACNNNNGTC	1 cut(s)	780
PsiI	TTATAA	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	235, 285
PspFI	CCCAGC	2 cut(s)	361, 619
PspGI	CCWGG	2 cut(s)	235, 285
PspN4I	GGNNCC	2 cut(s)	234, 292
PspPI	GGNCC	2 cut(s)	58, 460
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	378, 512
RsaNI	GTAC	2 cut(s)	377, 511
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	2 cut(s)	35, 633
Sau3AI	GATC	2 cut(s)	63, 232
Sau96I	GGNCC	2 cut(s)	58, 460
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	237, 287
SduI	GDGCHC	2 cut(s)	43, 295
SfaNI	GCATC	3 cut(s)	136, 186, 725
SinI	GGWCC	2 cut(s)	58, 460
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	5 cut(s)	112, 253, 502, 658, 732
SseBI	AGGCCT	2 cut(s)	262, 904
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	2 cut(s)	262, 904
StyD4I	CCNGG	2 cut(s)	235, 285
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	3 cut(s)	317, 488, 628
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	4 cut(s)	144, 270, 335, 784
TasI	AATT	5 cut(s)	112, 253, 502, 658, 732
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	34, 632
TspDTI	ATGAA	3 cut(s)	571, 615, 823
TspGWI	ACGGA	3 cut(s)	245, 830, 880
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	58, 460
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.