Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Reverse (-)

417729 .. 420931

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00750.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCGTGGAACGCGTTCAAGCTATGTACGGCGCTGCGAGCCCTAGGATACATCATGGTCGTCGTCGTCGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGGCCAATTACTTACCCGCGCTTCTCGGAGGTGGCATCGATGCCCTTATTGCTCTCCCGCTCTTGATTCTGTTCCATTTTCTGTTGGTGATGCTGCTGTGGAGCTACTTCTATGTTCTTGTAACGGATCCTGGTGGTGTTCCACTGAATTGGAGGCCTGAAATCGATGAGGAGGCAGGCCAAGGAGCCCCGTTGGTGGAATCAGAATACAGTGGTGCAGGTCTAGTATCCAACCAATCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTTCGTTTCTGTCGAAAGTGCAACCACTTTAAACCGCCTCGTTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTGTTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCCTGTTTTATACCTTTCTCGAGACAACTCTCGTCACATTATCATTGTTGAGATATTTTATGGCATTTTTTACCGATCAAGAGATATCTGGAACACTGGGAACTGTTGCAGCCAGTTTTATCACATTTGTTTTGAACTTGGCATTTTCCTTGAGCGTTTTAGGCTTTATGATCATGCACATATCATTGGTGGCAGCCAATACCACCACAATTGAGGCGTATGAGAAGAAAAGTATTCCCAAATGGCATTATGACCTTGGTCGAAAGCAAAACTTTGAACAGGTGTTTGGGACAAATAAGTGGTATTGGTTCATTCCTGCATATTCAGAGGAGGATTTAAGACGGATGCCAGCTCTTCAGGGGATAGATTATCCAACAAGGCCTGAGTTGCATGCACTCCAGCAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

311

Amino Acids

35.1

Weight (kDa)

7.09

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	125 - 250	2.2e-38	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	166
AccII	CGCG	2 cut(s)	14, 125
AciI	CCGC	3 cut(s)	123, 164, 410
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	2 cut(s)	28, 512
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	19, 454, 502, 658, 800
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	3 cut(s)	22, 210, 875
AluI	AGCT	3 cut(s)	22, 210, 875
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	227, 240
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	5 cut(s)	82, 108, 260, 283, 902
ApeKI	GCWGC	4 cut(s)	34, 199, 632, 716
Asp700I	GAANNNNTTC	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	34, 127
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	79, 205
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	460
AvrII	CCTAGG	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	43, 295
BbvI	GCAGC	4 cut(s)	21, 186, 644, 728
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	2 cut(s)	45, 83
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	2 cut(s)	41, 343
BclI	TGATCA	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	44, 329
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	2 cut(s)	41, 343
BisI	GCNGC	4 cut(s)	35, 200, 633, 717
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	4 cut(s)	36, 201, 634, 718
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	234, 292
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	4 cut(s)	136, 150, 186, 858
BmuI	ACTGGG	1 cut(s)	629
BoxI	GACNNNNGTC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	694
Bsa29I	ATCGAT	2 cut(s)	144, 270
BsaJI	CCNNGG	3 cut(s)	43, 286, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	624, 636
BseBI	CCWGG	1 cut(s)	237
BseCI	ATCGAT	2 cut(s)	144, 270
BseDI	CCNNGG	3 cut(s)	43, 286, 778
BseGI	GGATG	1 cut(s)	873
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	2 cut(s)	624, 636
BseRI	GAGGAG	2 cut(s)	290, 866
BseXI	GCAGC	4 cut(s)	21, 186, 644, 728
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	14, 125
BshFI	GGCC	5 cut(s)	84, 110, 262, 285, 904
BshVI	ATCGAT	2 cut(s)	144, 270
BsiHKCI	CYCGRG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	5 cut(s)	84, 110, 262, 285, 904
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	43, 295
Bsp143I	GATC	3 cut(s)	232, 598, 693
BspACI	CCGC	3 cut(s)	123, 164, 410
BspANI	GGCC	5 cut(s)	84, 110, 262, 285, 904
BspCNI	CTCAG	1 cut(s)	898
BspDI	ATCGAT	2 cut(s)	144, 270
BspFNI	CGCG	2 cut(s)	14, 125
BspLI	GGNNCC	2 cut(s)	234, 292
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	882
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	624, 636
BssECI	CCNNGG	3 cut(s)	43, 286, 778
BssMI	GATC	3 cut(s)	232, 598, 693
BssT1I	CCWWGG	3 cut(s)	43, 286, 778
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	317, 488, 628
Bst6I	CTCTTC	1 cut(s)	882
BstC8I	GCNNGC	4 cut(s)	39, 283, 873, 915
BstDEI	CTNAG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	873
BstFNI	CGCG	2 cut(s)	14, 125
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 127
BstKTI	GATC	3 cut(s)	235, 601, 696
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	3 cut(s)	232, 598, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 81, 155, 684, 910
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	917
BstPAI	GACNNNNGTC	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	2 cut(s)	14, 125
BstV1I	GCAGC	4 cut(s)	21, 186, 644, 728
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	2 cut(s)	144, 270
BsuI	GTATCC	2 cut(s)	41, 343
BsuRI	GGCC	5 cut(s)	84, 110, 262, 285, 904
BsuTUI	ATCGAT	2 cut(s)	144, 270
BtsCI	GGATG	1 cut(s)	873
BtsIMutI	CAGTG	3 cut(s)	248, 322, 617
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	39, 283, 873, 915
CfoI	GCGC	2 cut(s)	34, 127
Cfr13I	GGNCC	1 cut(s)	460
ClaI	ATCGAT	2 cut(s)	144, 270
Csp6I	GTAC	2 cut(s)	27, 511
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	4 cut(s)	55, 349, 697, 914
CviQI	GTAC	2 cut(s)	27, 511
DdeI	CTNAG	1 cut(s)	906
DpnI	GATC	3 cut(s)	234, 600, 695
DpnII	GATC	3 cut(s)	232, 598, 693
DraI	TTTAAA	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco130I	CCWWGG	3 cut(s)	43, 286, 778
Eco147I	AGGCCT	2 cut(s)	262, 904
Eco24I	GRGCYC	2 cut(s)	43, 295
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	3 cut(s)	43, 286, 778
EcoT38I	GRGCYC	2 cut(s)	43, 295
ErhI	CCWWGG	3 cut(s)	43, 286, 778
FaeI	CATG	4 cut(s)	58, 352, 700, 917
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	4 cut(s)	54, 348, 696, 913
FauI	CCCGC	2 cut(s)	130, 171
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	35, 200, 633, 717
FokI	GGATG	1 cut(s)	880
FriOI	GRGCYC	2 cut(s)	43, 295
Fsp4HI	GCNGC	4 cut(s)	35, 200, 633, 717
FspBI	CTAG	2 cut(s)	44, 329
GlaI	GCGC	2 cut(s)	33, 126
GluI	GCNGC	4 cut(s)	35, 200, 633, 717
GsaI	CCCAGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	905
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	5 cut(s)	84, 110, 262, 285, 904
HhaI	GCGC	2 cut(s)	34, 127
Hin1II	CATG	4 cut(s)	58, 352, 700, 917
Hin6I	GCGC	2 cut(s)	32, 125
HinP1I	GCGC	2 cut(s)	32, 125
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	172, 305
HphI	GGTGA	2 cut(s)	79, 205
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	134, 310, 850
Hpy188III	TCNNGA	5 cut(s)	169, 542, 544, 602, 612
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	5 cut(s)	65, 68, 71, 74, 104
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	317, 488, 628
HpyCH4V	TGCA	7 cut(s)	323, 396, 632, 700, 842, 913, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 81, 155, 684, 910
HpyF3I	CTNAG	1 cut(s)	906
Hsp92II	CATG	4 cut(s)	58, 352, 700, 917
HspAI	GCGC	2 cut(s)	32, 125
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	232, 598, 693
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	3 cut(s)	207, 290, 494
Lsp1109I	GCAGC	4 cut(s)	21, 186, 644, 728
LweI	GCATC	4 cut(s)	136, 150, 186, 858
MaeI	CTAG	2 cut(s)	44, 329
MaeIII	GTNAC	2 cut(s)	226, 556
MalI	GATC	3 cut(s)	234, 600, 695
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	3 cut(s)	232, 598, 693
MboII	GAAGA	2 cut(s)	760, 869
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	43, 295
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	5 cut(s)	112, 253, 502, 732, 926
MluI	ACGCGT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	360, 472, 920
Mox20I	TGGCCA	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	2 cut(s)	405, 860
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	14, 125
MwoI	GCNNNNNNNGC	5 cut(s)	38, 81, 155, 684, 910
NdeII	GATC	3 cut(s)	232, 598, 693
NlaIII	CATG	4 cut(s)	58, 352, 700, 917
NlaIV	GGNNCC	2 cut(s)	234, 292
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	917
PaeI	GCATGC	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	542
PceI	AGGCCT	2 cut(s)	262, 904
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 66, 385
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	172, 305
PkrI	GCNGC	4 cut(s)	36, 201, 634, 718
PshAI	GACNNNNGTC	1 cut(s)	780
PsiI	TTATAA	1 cut(s)	931
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	234, 292
PspPI	GGNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	28, 512
RsaNI	GTAC	2 cut(s)	27, 511
RseI	CAYNNNNRTG	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	405, 860
SatI	GCNGC	4 cut(s)	35, 200, 633, 717
Sau3AI	GATC	3 cut(s)	232, 598, 693
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	43, 295
SfaNI	GCATC	4 cut(s)	136, 150, 186, 858
Sfr274I	CTCGAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	542, 673
SmoI	CTYRAG	2 cut(s)	542, 673
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	5 cut(s)	112, 253, 502, 732, 926
SseBI	AGGCCT	2 cut(s)	262, 904
SsiI	CCGC	3 cut(s)	123, 164, 410
SspMI	CTAG	2 cut(s)	44, 329
StuI	AGGCCT	2 cut(s)	262, 904
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	3 cut(s)	43, 286, 778
TaaI	ACNGT	3 cut(s)	317, 488, 628
TaqI	TCGA	5 cut(s)	144, 270, 388, 543, 784
TasI	AATT	5 cut(s)	112, 253, 502, 732, 926
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	172, 305
Tru1I	TTAA	2 cut(s)	405, 860
Tru9I	TTAA	2 cut(s)	405, 860
TscAI	CASTG	3 cut(s)	255, 322, 624
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	4 cut(s)	34, 199, 632, 716
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	2 cut(s)	245, 880
TspRI	CASTG	3 cut(s)	255, 322, 624
VpaK11BI	GGWCC	1 cut(s)	460
XceI	RCATGY	1 cut(s)	917
XhoI	CTCGAG	1 cut(s)	542
XmaJI	CCTAGG	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	44, 329
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.