Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Forward (+)

15750122 .. 15753572

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG193000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTAGGCTACATAATGGTCGTGATCGTTGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGACGCCCTTATTGCTTTCCCGCTCTTGATTTTGTTCCATTTTCTGTTGGTGATGCTGTTGTGGAGCTACTTTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACTGAATTGGAGGCCTGAAATCGATGAGGAGGGAGGCCAGGGAGCCCCATTGGTGGAATCAGAATACAGTGGTGCAGGTTTAGTATCCAACCAATCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCACCTCGCTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCGCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACACTGGGAACTGTTGCAGCCAGTTTTATCACATTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

218

Amino Acids

24.45

Weight (kDa)

6.97

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	125 - 207	3.5e-31	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	227, 240
AcyI	GRCGYC	2 cut(s)	141, 147
AfaI	GTAC	2 cut(s)	378, 512
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	19, 454, 502
AjnI	CCWGG	2 cut(s)	235, 285
AluBI	AGCT	2 cut(s)	22, 210
AluI	AGCT	2 cut(s)	22, 210
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	3 cut(s)	82, 260, 283
ApeKI	GCWGC	2 cut(s)	34, 632
Asp700I	GAANNNNTTC	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	34, 127
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	79, 205
AvaII	GGWCC	1 cut(s)	460
AvrII	CCTAGG	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	43, 295
BbvI	GCAGC	2 cut(s)	21, 644
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	2 cut(s)	45, 83
BciT130I	CCWGG	2 cut(s)	237, 287
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	2 cut(s)	35, 128
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	35, 633
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	2 cut(s)	36, 634
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	237, 287
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	234, 292
BmrFI	CCNGG	2 cut(s)	237, 287
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	270
BsaHI	GRCGYC	2 cut(s)	141, 147
BsaJI	CCNNGG	4 cut(s)	43, 133, 236, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	624, 636
BseBI	CCWGG	2 cut(s)	237, 287
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	43, 133, 236, 286
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	624, 636
BseRI	GAGGAG	2 cut(s)	150, 290
BseXI	GCAGC	2 cut(s)	21, 644
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	2 cut(s)	10, 342
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	84, 262, 285
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	3 cut(s)	84, 262, 285
Bsp1286I	GDGCHC	2 cut(s)	43, 295
Bsp143I	GATC	2 cut(s)	63, 232
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	3 cut(s)	84, 262, 285
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	234, 292
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	2 cut(s)	227, 240
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	624, 636
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	4 cut(s)	43, 133, 236, 286
BssMI	GATC	2 cut(s)	63, 232
BssNI	GRCGYC	2 cut(s)	141, 147
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	237, 287
Bst4CI	ACNGT	3 cut(s)	317, 488, 628
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	2 cut(s)	141, 147
BstC8I	GCNNGC	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	35, 128
BstHHI	GCGC	2 cut(s)	34, 127
BstKTI	GATC	2 cut(s)	66, 235
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	63, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 38, 81, 155
BstNI	CCWGG	2 cut(s)	237, 287
BstSCI	CCNGG	2 cut(s)	235, 285
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	21, 644
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	84, 262, 285
BsuTUI	ATCGAT	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	248, 322, 617
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	2 cut(s)	34, 127
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	460
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	2 cut(s)	130, 155
Csp6I	GTAC	2 cut(s)	377, 511
CviAII	CATG	2 cut(s)	349, 583
CviQI	GTAC	2 cut(s)	377, 511
DpnI	GATC	2 cut(s)	65, 234
DpnII	GATC	2 cut(s)	63, 232
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	43, 295
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	235, 285
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	43, 295
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	352, 586
FaiI	YATR	6 cut(s)	53, 77, 219, 350, 405, 584
FatI	CATG	2 cut(s)	348, 582
FauI	CCCGC	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	35, 633
FriOI	GRGCYC	2 cut(s)	43, 295
Fsp4HI	GCNGC	2 cut(s)	35, 633
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	33, 126
GluI	GCNGC	2 cut(s)	35, 633
GsaI	CCCAGC	1 cut(s)	365
HaeII	RGCGCY	2 cut(s)	35, 128
HaeIII	GGCC	3 cut(s)	84, 262, 285
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	2 cut(s)	130, 155
HhaI	GCGC	2 cut(s)	34, 127
Hin1I	GRCGYC	2 cut(s)	141, 147
Hin1II	CATG	2 cut(s)	352, 586
Hin6I	GCGC	2 cut(s)	32, 125
HinP1I	GCGC	2 cut(s)	32, 125
HincII	GTYRAC	2 cut(s)	145, 484
HindII	GTYRAC	2 cut(s)	145, 484
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	79, 205
Hpy166II	GTNNAC	2 cut(s)	145, 484
Hpy188I	TCNGA	3 cut(s)	134, 310, 390
Hpy188III	TCNNGA	4 cut(s)	61, 169, 542, 612
Hpy8I	GTNNAC	2 cut(s)	145, 484
Hpy99I	CGWCG	3 cut(s)	104, 146, 149
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	317, 488, 628
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	27, 323, 396, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 38, 81, 155
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	2 cut(s)	141, 147
Hsp92II	CATG	2 cut(s)	352, 586
HspAI	GCGC	2 cut(s)	32, 125
Kzo9I	GATC	2 cut(s)	63, 232
LmnI	GCTCC	3 cut(s)	207, 290, 494
Lsp1109I	GCAGC	2 cut(s)	21, 644
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	379
MalI	GATC	2 cut(s)	65, 234
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	2 cut(s)	63, 232
MboII	GAAGA	1 cut(s)	614
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	43, 295
MluCI	AATT	3 cut(s)	112, 253, 502
MluI	ACGCGT	1 cut(s)	12
MmeI	TCCRAC	2 cut(s)	360, 368
MnlI	CCTC	9 cut(s)	95, 128, 131, 252, 268, 271, 275, 423, 435
MroXI	GAANNNNTTC	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	237, 287
MvaI	CCWGG	2 cut(s)	237, 287
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	11, 38, 81, 155
NdeII	GATC	2 cut(s)	63, 232
NlaIII	CATG	2 cut(s)	352, 586
NlaIV	GGNNCC	2 cut(s)	234, 292
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	36, 634
Psp6I	CCWGG	2 cut(s)	235, 285
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	235, 285
PspN4I	GGNNCC	2 cut(s)	234, 292
PspPI	GGNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	378, 512
RsaNI	GTAC	2 cut(s)	377, 511
RseI	CAYNNNNRTG	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	143
SatI	GCNGC	2 cut(s)	35, 633
Sau3AI	GATC	2 cut(s)	63, 232
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	237, 287
SduI	GDGCHC	2 cut(s)	43, 295
SetI	ASST	7 cut(s)	24, 92, 212, 328, 382, 415, 446
SfaNI	GCATC	1 cut(s)	186
SgrDI	CGTCGACG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	3 cut(s)	112, 253, 502
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	235, 285
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	317, 488, 628
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	144, 270
TasI	AATT	3 cut(s)	112, 253, 502
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	3 cut(s)	255, 322, 624
TseI	GCWGC	2 cut(s)	34, 632
TspDTI	ATGAA	2 cut(s)	571, 615
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	3 cut(s)	255, 322, 624
VpaK11BI	GGWCC	1 cut(s)	460
XmaJI	CCTAGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.