Rh7DG195500

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006531
Physical Location & Seq
Forward (+)
18420696 .. 18424072
3377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG195500.1

Sequence Viewer

Length: 669 bp
ATGCCAGCAGGAATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTCGGCTACATAATGGTCCTGATCGTTGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGACGCCCTTATTGCTTTCCCGCTCTTGATTCTGTTCCACTTTCTGTTGGCGATGCTGTTGTGGAGCTACTCTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACCGAATTGGAGGCCTGAAATTGATGAGGAGGGAGGCCAGGGAGCCCCATTGGTGGAATCAGAATACAGTGGTGCAGGTCTAGTATCCAACCAATCTGTCATTGCTTTTGACCCTGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCTCCTCGTTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCGCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACACTGGGAACTGTTGCAGCCAGTTTTATCACATTCGGTTAG

Protein Analysis

222

Amino Acids

24.7

Weight (kDa)

6.97

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 129 - 211 3.6e-31 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 26
AciI CCGC 1 cut(s) 176
AclWI GGATC 2 cut(s) 239, 252
AcyI GRCGYC 2 cut(s) 153, 159
AfaI GTAC 2 cut(s) 390, 524
AfiI CCNNNNNNNGG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 31, 466, 514
AjnI CCWGG 2 cut(s) 247, 297
AluBI AGCT 2 cut(s) 34, 222
AluI AGCT 2 cut(s) 34, 222
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 2 cut(s) 239, 252
AoxI GGCC 3 cut(s) 94, 272, 295
ApeKI GCWGC 2 cut(s) 46, 644
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 46, 139
AspS9I GGNCC 2 cut(s) 70, 472
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 2 cut(s) 70, 472
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 2 cut(s) 55, 307
BbvI GCAGC 2 cut(s) 33, 656
BccI CCATC 1 cut(s) 483
BceAI ACGGC 2 cut(s) 57, 95
BciT130I CCWGG 2 cut(s) 249, 299
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 341
BfoI RGCGCY 2 cut(s) 47, 140
BfuAI ACCTGC 1 cut(s) 326
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 2 cut(s) 47, 645
BlsI GCNGC 2 cut(s) 48, 646
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 249, 299
Bme18I GGWCC 2 cut(s) 70, 472
BmgT120I GGNCC 2 cut(s) 70, 472
BmiI GGNNCC 2 cut(s) 246, 304
BmrFI CCNGG 2 cut(s) 249, 299
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 575
BsaHI GRCGYC 2 cut(s) 153, 159
BsaJI CCNNGG 4 cut(s) 55, 145, 248, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 636, 648
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 249, 299
BseDI CCNNGG 4 cut(s) 55, 145, 248, 298
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 636, 648
BseRI GAGGAG 3 cut(s) 162, 302, 414
BseXI GCAGC 2 cut(s) 33, 656
BsgI GTGCAG 2 cut(s) 22, 354
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 96, 274, 297
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 551
BsnI GGCC 3 cut(s) 96, 274, 297
Bsp1286I GDGCHC 2 cut(s) 55, 307
Bsp143I GATC 2 cut(s) 75, 244
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 96, 274, 297
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 246, 304
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 239, 252
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 2 cut(s) 636, 648
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 55, 145, 248, 298
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 2 cut(s) 153, 159
Bst2UI CCWGG 2 cut(s) 249, 299
Bst4CI ACNGT 3 cut(s) 329, 500, 640
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 2 cut(s) 153, 159
BstC8I GCNNGC 2 cut(s) 6, 51
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 47, 140
BstHHI GCGC 2 cut(s) 46, 139
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 2 cut(s) 75, 244
BstMWI GCNNNNNNNGC 5 cut(s) 14, 23, 50, 93, 167
BstNI CCWGG 2 cut(s) 249, 299
BstSCI CCNGG 2 cut(s) 247, 297
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 33, 656
BstX2I RGATCY 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 3 cut(s) 96, 274, 297
BtgZI GCGATG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 334, 629
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 6, 51
CfoI GCGC 2 cut(s) 46, 139
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 70, 472
CseI GACGC 2 cut(s) 142, 167
Csp6I GTAC 2 cut(s) 389, 523
CviAII CATG 1 cut(s) 595
CviJI RGCY 9 cut(s) 34, 53, 60, 96, 222, 274, 297, 305, 647
CviKI_1 RGCY 9 cut(s) 34, 53, 60, 96, 222, 274, 297, 305, 647
CviQI GTAC 2 cut(s) 389, 523
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 274
Eco24I GRGCYC 2 cut(s) 55, 307
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 70, 472
EcoRII CCWGG 2 cut(s) 247, 297
EcoRV GATATC 1 cut(s) 621
EcoT38I GRGCYC 2 cut(s) 55, 307
FaeI CATG 1 cut(s) 598
FaiI YATR 5 cut(s) 65, 89, 231, 417, 596
FatI CATG 1 cut(s) 594
FauI CCCGC 1 cut(s) 183
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 47, 645
FriOI GRGCYC 2 cut(s) 55, 307
Fsp4HI GCNGC 2 cut(s) 47, 645
FspBI CTAG 1 cut(s) 341
GlaI GCGC 2 cut(s) 45, 138
GluI GCNGC 2 cut(s) 47, 645
HaeII RGCGCY 2 cut(s) 47, 140
HaeIII GGCC 3 cut(s) 96, 274, 297
HapII CCGG 1 cut(s) 134
HgaI GACGC 2 cut(s) 142, 167
HhaI GCGC 2 cut(s) 46, 139
Hin1I GRCGYC 2 cut(s) 153, 159
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 2 cut(s) 44, 137
HinP1I GCGC 2 cut(s) 44, 137
HincII GTYRAC 2 cut(s) 157, 496
HindII GTYRAC 2 cut(s) 157, 496
HinfI GANTC 2 cut(s) 184, 317
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 157, 496
Hpy188I TCNGA 3 cut(s) 146, 322, 402
Hpy188III TCNNGA 4 cut(s) 73, 181, 554, 624
Hpy8I GTNNAC 2 cut(s) 157, 496
Hpy99I CGWCG 3 cut(s) 116, 158, 161
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 3 cut(s) 329, 500, 640
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 5 cut(s) 39, 335, 377, 408, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 23, 50, 93, 167
HpySE526I ACGT 1 cut(s) 391
Hsp92I GRCGYC 2 cut(s) 153, 159
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 2 cut(s) 44, 137
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 3 cut(s) 219, 302, 506
Lsp1109I GCAGC 2 cut(s) 33, 656
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 391
MalI GATC 2 cut(s) 77, 246
MbiI CCGCTC 1 cut(s) 178
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 626
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 55, 307
MluCI AATT 4 cut(s) 124, 265, 279, 514
MluI ACGCGT 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 372, 380
MroXI GAANNNNTTC 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 249, 299
MvaI CCWGG 2 cut(s) 249, 299
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 14, 23, 50, 93, 167
NdeII GATC 2 cut(s) 75, 244
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 2 cut(s) 246, 304
NmeAIII GCCGAG 1 cut(s) 36
PceI AGGCCT 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 184, 317
PkrI GCNGC 2 cut(s) 48, 646
Psp6I CCWGG 2 cut(s) 247, 297
PspGI CCWGG 2 cut(s) 247, 297
PspN4I GGNNCC 2 cut(s) 246, 304
PspPI GGNCC 2 cut(s) 70, 472
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 390, 524
RsaNI GTAC 2 cut(s) 389, 523
RseI CAYNNNNRTG 1 cut(s) 480
SalI GTCGAC 1 cut(s) 155
SatI GCNGC 2 cut(s) 47, 645
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 2 cut(s) 70, 472
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 249, 299
SduI GDGCHC 2 cut(s) 55, 307
SetI ASST 7 cut(s) 36, 104, 224, 340, 394, 424, 458
SfaNI GCATC 1 cut(s) 198
SgrDI CGTCGACG 1 cut(s) 155
SinI GGWCC 2 cut(s) 70, 472
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 4 cut(s) 124, 265, 279, 514
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 247, 297
TaaI ACNGT 3 cut(s) 329, 500, 640
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 124, 265, 279, 514
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 184, 317
TscAI CASTG 2 cut(s) 334, 636
TseI GCWGC 2 cut(s) 46, 644
TspDTI ATGAA 2 cut(s) 583, 627
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 334, 636
VpaK11BI GGWCC 2 cut(s) 70, 472
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.