Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345589.1

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1023

Gene Structure 1022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

gatgctgttgtggagctactcttatgttgttctaacggatcctgggggtattccaccgaattggaggcctgaaattgatgaggagggaggccagggagccccattggtggaatcagaatacagtggtgcaggtctagtatccaaccaatctgtcattgcttttgaccctgcaaatcaaaaagtacgtttctgtcggaagtgcaaccactataaacctcctcgttgtcatcattgttctgtttgtgggaggtgtattttgaaaatggaccatcattgtgtgtgggtggtcaactgtattggagcattgaattacaagtacttccttcttttcttgttttacacatttcttgagacaactcttgtcgcattatcattattgagatatttcatggcattttttaccgatgaagagatatctggaacactgggaactgttgcagccagttttatcacattcgttttgaatttagcatttgcgttgagcattttgggctttatgctcatgcacctatcattggtggcatccaataccaccacaattgaggcatatgagaagaaaagtactcccaaatggcattatgaccttggtcgaaagaaaaactttgaacaggtttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

204

Amino Acids

23.11

Weight (kDa)

7.02

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	33, 46
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	3 cut(s)	184, 318, 563
AfiI	CCNNNNNNNGG	2 cut(s)	107, 515
AgsI	TTSAA	4 cut(s)	260, 308, 464, 606
AjnI	CCWGG	2 cut(s)	41, 91
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	33, 46
AoxI	GGCC	2 cut(s)	66, 89
ApeKI	GCWGC	1 cut(s)	438
ApoI	RAATTY	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	43, 93
BciVI	GTATCC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	440
BmcAI	AGTACT	2 cut(s)	318, 563
Bme1390I	CCNGG	2 cut(s)	43, 93
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	40, 98
BmrFI	CCNGG	2 cut(s)	43, 93
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	435
BoxI	GACNNNNGTC	1 cut(s)	586
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	42, 92, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 515
Bse1I	ACTGG	2 cut(s)	430, 442
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	43, 93
BseDI	CCNNGG	3 cut(s)	42, 92, 584
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	107, 515
BseMI	GCAATG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	430, 442
BseRI	GAGGAG	2 cut(s)	96, 208
BseXI	GCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	68, 91
BslI	CCNNNNNNNGG	2 cut(s)	107, 515
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	68, 91
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	68, 91
BspLI	GGNNCC	2 cut(s)	40, 98
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	33, 46
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	430, 442
BssECI	CCNNGG	3 cut(s)	42, 92, 584
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	584
Bst2UI	CCWGG	2 cut(s)	43, 93
Bst4CI	ACNGT	3 cut(s)	123, 294, 434
Bst6I	CTCTTC	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	522
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	2 cut(s)	43, 93
BstPAI	GACNNNNGTC	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	41, 91
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	68, 91
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	128, 423
BveI	ACCTGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	183, 317, 562
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CviAII	CATG	2 cut(s)	389, 503
CviJI	RGCY	6 cut(s)	16, 68, 91, 99, 441, 493
CviKI_1	RGCY	6 cut(s)	16, 68, 91, 99, 441, 493
CviQI	GTAC	3 cut(s)	183, 317, 562
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	584
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	41, 91
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	584
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	2 cut(s)	392, 506
FaiI	YATR	8 cut(s)	25, 211, 390, 498, 504, 548, 550, 580
FalI	AAGNNNNNCTT	1 cut(s)	585
FatI	CATG	2 cut(s)	388, 502
FauNDI	CATATG	1 cut(s)	548
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	439
HaeIII	GGCC	2 cut(s)	68, 91
Hin1II	CATG	2 cut(s)	392, 506
HincII	GTYRAC	1 cut(s)	290
HindII	GTYRAC	1 cut(s)	290
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	116, 196
Hpy188III	TCNNGA	2 cut(s)	348, 418
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	3 cut(s)	123, 294, 434
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	129, 171, 202, 438, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	392, 506
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	13, 96, 300
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	420, 566
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	5 cut(s)	59, 73, 308, 464, 538
MmeI	TCCRAC	2 cut(s)	166, 174
MnlI	CCTC	8 cut(s)	58, 74, 77, 81, 226, 229, 241, 536
MslI	CAYNNNNRTG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	43, 93
MunI	CAATTG	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	43, 93
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	392, 506
NlaIV	GGNNCC	2 cut(s)	40, 98
PceI	AGGCCT	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	440
PshAI	GACNNNNGTC	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	41, 91
PspGI	CCWGG	2 cut(s)	41, 91
PspN4I	GGNNCC	2 cut(s)	40, 98
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	3 cut(s)	184, 318, 563
RsaNI	GTAC	3 cut(s)	183, 317, 562
RseI	CAYNNNNRTG	1 cut(s)	274
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	2 cut(s)	318, 563
ScrFI	CCNGG	2 cut(s)	43, 93
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	8 cut(s)	18, 134, 188, 218, 252, 511, 586, 613
SfaNI	GCATC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	5 cut(s)	59, 73, 308, 464, 538
SseBI	AGGCCT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	41, 91
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	3 cut(s)	123, 294, 434
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	590
TasI	AATT	5 cut(s)	59, 73, 308, 464, 538
TatI	WGTACW	2 cut(s)	316, 561
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	128, 430
TseI	GCWGC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	377, 421
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	128, 430
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	2 cut(s)	318, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.