Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Reverse (-)

4829970 .. 4830608

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAGGGTGAAACTGGAAAAGGAAAAAGCCAGCATGGCGAGGAAAGAGAAGAAGATCGCCGCCGCCAGGAAGGCTTTTTTCCGGTACGACCGTGACCCGGATTACCAGTTCTTGTACAACCGGGTCTCGGATCTTTTCGCCGAGTGCCTGAAATCCGATCTCAACAATTTGAAGACTAGACAGTACAAGAAGATAAGCCTTGCAGCCAAGTGGTGTCCTTCGCTGGACTCCTCATTCGACAGAGCCACTCTGCTATGTGAAAACATTGCCAGGAGGGTTTTCCCGCGAGAATCGTCGCCGGAATATAAAGGAATTGAGGATGCTCATTATGCTTACAGAGTCAGAGACCGGCTGAGGAAGGAGGTTTTGGTCCCACTGAGGAAGGTTCTGGAATTACCAGAGGTTTATATGGGTGCTAATAATTGGGGGGCTCTTCCTTACAGTAGAGTGACCTCTGTAGCCATGAAGCTTTACAAAGGGAAATTTGTTAAGCATGATAAGGAGCGGTTCATCCAATACTTGGAGGATGTGAGAGAAGGCAAGGCCACGATTGCGGCGGGTGCATTGCTTCCTCATGAGATCATAAAGTCTCTGGATGATGACGACGACGGTGGGCTGGTGAGTGAGCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

212

Amino Acids

24.62

Weight (kDa)

9.26

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	4 - 199	1.1e-80	Domain of unknown function (DUF2828)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	508
AccII	CGCG	1 cut(s)	289
AciI	CCGC	6 cut(s)	63, 66, 287, 508, 557, 560
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	89, 119, 188
AfiI	CCNNNNNNNGG	4 cut(s)	69, 100, 130, 523
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	68, 272
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	472, 631
AluI	AGCT	2 cut(s)	472, 631
Alw26I	GTCTC	3 cut(s)	133, 342, 597
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	2 cut(s)	101, 125
AsuHPI	GGTGA	2 cut(s)	22, 634
AvaII	GGWCC	1 cut(s)	373
BaeI	ACNNNNGTAYC	2 cut(s)	79, 112
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	70, 274
BcnI	CCSGG	2 cut(s)	101, 125
BcoDI	GTCTC	3 cut(s)	133, 342, 597
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	459
BglI	GCCNNNNNGGC	2 cut(s)	38, 74
BisI	GCNGC	4 cut(s)	63, 66, 207, 558
BlsI	GCNGC	4 cut(s)	64, 67, 208, 559
Bme1390I	CCNGG	4 cut(s)	70, 101, 125, 274
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	4 cut(s)	70, 101, 125, 274
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	101, 125
BsaI	GGTCTC	2 cut(s)	133, 342
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 100, 130, 523
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	21, 109
Bse3DI	GCAATG	2 cut(s)	267, 566
BseBI	CCWGG	2 cut(s)	70, 274
BseGI	GGATG	4 cut(s)	328, 513, 535, 604
BseLI	CCNNNNNNNGG	4 cut(s)	69, 100, 130, 523
BseMI	GCAATG	2 cut(s)	267, 566
BseMII	CTCAG	2 cut(s)	347, 371
BseNI	ACTGG	2 cut(s)	21, 109
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	5 cut(s)	85, 101, 124, 302, 352
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	4 cut(s)	69, 100, 130, 523
BsmAI	GTCTC	3 cut(s)	133, 342, 597
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	2 cut(s)	133, 342
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	57, 133, 160, 582
BspACI	CCGC	6 cut(s)	63, 66, 287, 508, 557, 560
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	348, 372
BspFNI	CGCG	1 cut(s)	289
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	441
BspTNI	GGTCTC	2 cut(s)	133, 342
BsrBI	CCGCTC	1 cut(s)	508
BsrDI	GCAATG	2 cut(s)	267, 566
BsrFI	RCCGGY	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	21, 109
BssAI	RCCGGY	1 cut(s)	351
BssMI	GATC	4 cut(s)	57, 133, 160, 582
Bst2UI	CCWGG	2 cut(s)	70, 274
Bst4CI	ACNGT	4 cut(s)	95, 186, 446, 614
Bst6I	CTCTTC	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	356, 380
BstF5I	GGATG	4 cut(s)	328, 513, 535, 604
BstFNI	CGCG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	60, 136, 163, 585
BstMAI	GTCTC	3 cut(s)	133, 342, 597
BstMBI	GATC	4 cut(s)	57, 133, 160, 582
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 74, 332, 554, 563
BstNI	CCWGG	2 cut(s)	70, 274
BstSCI	CCNGG	4 cut(s)	68, 99, 123, 272
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	328, 513, 535, 604
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	88, 118, 187
CviAII	CATG	4 cut(s)	37, 466, 497, 578
CviQI	GTAC	3 cut(s)	88, 118, 187
DdeI	CTNAG	2 cut(s)	356, 380
DpnI	GATC	4 cut(s)	59, 135, 162, 584
DpnII	GATC	4 cut(s)	57, 133, 160, 582
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	2 cut(s)	133, 342
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	68, 272
EcoT38I	GRGCYC	1 cut(s)	436
FaeI	CATG	4 cut(s)	40, 469, 500, 581
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	4 cut(s)	36, 465, 496, 577
FauI	CCCGC	2 cut(s)	294, 553
Fnu4HI	GCNGC	4 cut(s)	63, 66, 207, 558
FokI	GGATG	4 cut(s)	335, 500, 542, 611
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	4 cut(s)	63, 66, 207, 558
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	4 cut(s)	63, 66, 207, 558
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	5 cut(s)	85, 101, 124, 302, 352
Hin1II	CATG	4 cut(s)	40, 469, 500, 581
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	230, 293, 342
HpaII	CCGG	5 cut(s)	85, 101, 124, 302, 352
HphI	GGTGA	2 cut(s)	22, 634
Hpy188I	TCNGA	3 cut(s)	133, 160, 347
Hpy188III	TCNNGA	3 cut(s)	392, 578, 596
Hpy99I	CGWCG	3 cut(s)	301, 611, 614
HpyAV	CCTTC	5 cut(s)	67, 231, 355, 379, 533
HpyCH4III	ACNGT	4 cut(s)	95, 186, 446, 614
HpyCH4V	TGCA	2 cut(s)	206, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 74, 332, 554, 563
HpyF3I	CTNAG	2 cut(s)	356, 380
Hsp92II	CATG	4 cut(s)	40, 469, 500, 581
Kzo9I	GATC	4 cut(s)	57, 133, 160, 582
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	95, 451
MalI	GATC	4 cut(s)	59, 135, 162, 584
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	4 cut(s)	57, 133, 160, 582
MboII	GAAGA	5 cut(s)	64, 67, 187, 205, 428
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	5 cut(s)	169, 315, 395, 424, 485
MlyI	GAGTC	2 cut(s)	224, 351
MseI	TTAA	1 cut(s)	492
MspI	CCGG	5 cut(s)	85, 101, 124, 302, 352
MspR9I	CCNGG	4 cut(s)	70, 101, 125, 274
MvaI	CCWGG	2 cut(s)	70, 274
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	5 cut(s)	38, 74, 332, 554, 563
NciI	CCSGG	2 cut(s)	101, 125
NdeII	GATC	4 cut(s)	57, 133, 160, 582
NlaIII	CATG	4 cut(s)	40, 469, 500, 581
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	95, 451
PagI	TCATGA	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	64, 67, 208, 559
PleI	GAGTC	2 cut(s)	224, 350
PpsI	GAGTC	2 cut(s)	224, 350
Psp6I	CCWGG	2 cut(s)	68, 272
PspGI	CCWGG	2 cut(s)	68, 272
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	3 cut(s)	89, 119, 188
RsaNI	GTAC	3 cut(s)	88, 118, 187
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	4 cut(s)	63, 66, 207, 558
Sau3AI	GATC	4 cut(s)	57, 133, 160, 582
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	224, 351
ScrFI	CCNGG	4 cut(s)	70, 101, 125, 274
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	6 cut(s)	369, 390, 408, 458, 474, 633
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	5 cut(s)	169, 315, 395, 424, 485
SsiI	CCGC	6 cut(s)	63, 66, 287, 508, 557, 560
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	68, 99, 123, 272
TaaI	ACNGT	4 cut(s)	95, 186, 446, 614
TaqI	TCGA	1 cut(s)	240
TasI	AATT	5 cut(s)	169, 315, 395, 424, 485
TatI	WGTACW	2 cut(s)	117, 186
TauI	GCSGC	3 cut(s)	65, 68, 560
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	95, 451
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	95, 451
TspDTI	ATGAA	2 cut(s)	482, 502
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	485
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.