Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Forward (+)

17266026 .. 17268606

Gene Structure 2581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCAGCAGGAATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTCGGCTACATAATGGTCCTGATCGTTGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGACGCCCTTATTGCTTTCCCGCTCTTGATTTTGTTCCACTTTCTGTTGGCGATGCTGTTGTGGAGCTACTCTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACCGAATTGGAGGCCTGAAATTGATGAGGAGGGAGGCCAGGGAGCCCCATTGGTGGAATCAGAATACAGTGGTGCAGGTCTAGTATCCAACCAATCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCTCCTCGTTGCCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCTCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACACTGGGAACTGTTGCAGCCAGTTTTATCACATTCGTTTTGAATTTAGCATTTGCGTTGAGCATTTTGGGCTTTATGCTCATGCACCTATCATTGGTGGCATCCAATACCACCACAATTGAGGCATATGAGAAGAAAAGTACTCCCAAATGGCATTATGACCTTGGTCGAAAGAAAAACTTTGAACAGGTGTTTGGGACGGATAAGTGGTATTGGTTCATTCCTGCATATTCAGAGGAGGATTTAAGACGGATACCAGCTCTTCAGGGGATTGATTACCCAACAAGGCCTGAGTTGCATGCACTCCAGCAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

314

Amino Acids

35.53

Weight (kDa)

7.09

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	129 - 254	6.8e-39	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	943
Acc36I	ACCTGC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	239, 252
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	875
AcyI	GRCGYC	2 cut(s)	153, 159
AfaI	GTAC	3 cut(s)	390, 524, 769
AfiI	CCNNNNNNNGG	2 cut(s)	313, 721
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	5 cut(s)	31, 466, 514, 670, 812
AjnI	CCWGG	2 cut(s)	247, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	804, 836
AluBI	AGCT	3 cut(s)	34, 222, 887
AluI	AGCT	3 cut(s)	34, 222, 887
Alw26I	GTCTC	2 cut(s)	551, 574
AlwI	GGATC	2 cut(s)	239, 252
AoxI	GGCC	4 cut(s)	94, 272, 295, 914
ApeKI	GCWGC	2 cut(s)	46, 644
ApoI	RAATTY	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	46, 139
AspS9I	GGNCC	2 cut(s)	70, 472
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	70, 472
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	2 cut(s)	55, 307
BbvI	GCAGC	2 cut(s)	33, 656
BccI	CCATC	2 cut(s)	441, 483
BceAI	ACGGC	2 cut(s)	57, 95
BciT130I	CCWGG	2 cut(s)	249, 299
BciVI	GTATCC	2 cut(s)	355, 873
BcoDI	GTCTC	2 cut(s)	551, 574
BfaI	CTAG	1 cut(s)	341
BfoI	RGCGCY	2 cut(s)	47, 140
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	2 cut(s)	355, 873
BisI	GCNGC	2 cut(s)	47, 645
BlsI	GCNGC	2 cut(s)	48, 646
BmcAI	AGTACT	2 cut(s)	524, 769
Bme1390I	CCNGG	2 cut(s)	249, 299
Bme18I	GGWCC	2 cut(s)	70, 472
BmgT120I	GGNCC	2 cut(s)	70, 472
BmiI	GGNNCC	2 cut(s)	246, 304
BmrFI	CCNGG	2 cut(s)	249, 299
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	198, 737
BmuI	ACTGGG	1 cut(s)	641
BoxI	GACNNNNGTC	1 cut(s)	792
BpmI	CTGGAG	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	153, 159
BsaJI	CCNNGG	5 cut(s)	55, 145, 248, 298, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 721
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	636, 648
BseBI	CCWGG	2 cut(s)	249, 299
BseDI	CCNNGG	5 cut(s)	55, 145, 248, 298, 790
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	2 cut(s)	313, 721
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	2 cut(s)	636, 648
BseRI	GAGGAG	4 cut(s)	162, 302, 414, 878
BseXI	GCAGC	2 cut(s)	33, 656
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	2 cut(s)	22, 354
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	96, 274, 297, 916
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	838
BslI	CCNNNNNNNGG	2 cut(s)	313, 721
BsmAI	GTCTC	2 cut(s)	551, 574
BsmFI	GGGAC	1 cut(s)	838
BsnI	GGCC	4 cut(s)	96, 274, 297, 916
Bsp1286I	GDGCHC	2 cut(s)	55, 307
Bsp143I	GATC	2 cut(s)	75, 244
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	96, 274, 297, 916
BspCNI	CTCAG	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	246, 304
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	239, 252
BspQI	GCTCTTC	1 cut(s)	894
BsrBI	CCGCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	636, 648
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	55, 145, 248, 298, 790
BssMI	GATC	2 cut(s)	75, 244
BssNI	GRCGYC	2 cut(s)	153, 159
BssT1I	CCWWGG	1 cut(s)	790
Bst2UI	CCWGG	2 cut(s)	249, 299
Bst4CI	ACNGT	3 cut(s)	329, 500, 640
Bst6I	CTCTTC	2 cut(s)	609, 894
BstACI	GRCGYC	2 cut(s)	153, 159
BstC8I	GCNNGC	3 cut(s)	6, 51, 927
BstDEI	CTNAG	1 cut(s)	918
BstF5I	GGATG	1 cut(s)	728
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	2 cut(s)	47, 140
BstHHI	GCGC	2 cut(s)	46, 139
BstKTI	GATC	2 cut(s)	78, 247
BstMAI	GTCTC	2 cut(s)	551, 574
BstMBI	GATC	2 cut(s)	75, 244
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 50, 93, 167, 696, 922
BstNI	CCWGG	2 cut(s)	249, 299
BstNSI	RCATGY	1 cut(s)	929
BstPAI	GACNNNNGTC	1 cut(s)	792
BstSCI	CCNGG	2 cut(s)	247, 297
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	33, 656
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	2 cut(s)	355, 873
BsuRI	GGCC	4 cut(s)	96, 274, 297, 916
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	334, 629
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	6, 51, 927
CfoI	GCGC	2 cut(s)	46, 139
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	70, 472
CseI	GACGC	2 cut(s)	142, 167
Csp6I	GTAC	3 cut(s)	389, 523, 768
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	4 cut(s)	361, 595, 709, 926
CviQI	GTAC	3 cut(s)	389, 523, 768
DdeI	CTNAG	1 cut(s)	918
DpnI	GATC	2 cut(s)	77, 246
DpnII	GATC	2 cut(s)	75, 244
Eam1104I	CTCTTC	2 cut(s)	609, 894
EarI	CTCTTC	2 cut(s)	609, 894
Eco130I	CCWWGG	1 cut(s)	790
Eco147I	AGGCCT	2 cut(s)	274, 916
Eco24I	GRGCYC	2 cut(s)	55, 307
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	70, 472
Eco57I	CTGAAG	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	247, 297
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	790
EcoT38I	GRGCYC	2 cut(s)	55, 307
ErhI	CCWWGG	1 cut(s)	790
FaeI	CATG	4 cut(s)	364, 598, 712, 929
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	838
FatI	CATG	4 cut(s)	360, 594, 708, 925
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	47, 645
FokI	GGATG	1 cut(s)	715
FriOI	GRGCYC	2 cut(s)	55, 307
Fsp4HI	GCNGC	2 cut(s)	47, 645
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	2 cut(s)	45, 138
GluI	GCNGC	2 cut(s)	47, 645
GsaI	CCCAGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	917
HaeII	RGCGCY	2 cut(s)	47, 140
HaeIII	GGCC	4 cut(s)	96, 274, 297, 916
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	2 cut(s)	142, 167
HhaI	GCGC	2 cut(s)	46, 139
Hin1I	GRCGYC	2 cut(s)	153, 159
Hin1II	CATG	4 cut(s)	364, 598, 712, 929
Hin6I	GCGC	2 cut(s)	44, 137
HinP1I	GCGC	2 cut(s)	44, 137
HincII	GTYRAC	2 cut(s)	157, 496
HindII	GTYRAC	2 cut(s)	157, 496
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	157, 496
Hpy188I	TCNGA	4 cut(s)	146, 322, 402, 862
Hpy188III	TCNNGA	4 cut(s)	73, 181, 554, 624
Hpy8I	GTNNAC	2 cut(s)	157, 496
Hpy99I	CGWCG	3 cut(s)	116, 158, 161
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	329, 500, 640
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	8 cut(s)	39, 335, 408, 644, 712, 854, 925, 929
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 50, 93, 167, 696, 922
HpyF3I	CTNAG	1 cut(s)	918
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	2 cut(s)	153, 159
Hsp92II	CATG	4 cut(s)	364, 598, 712, 929
HspAI	GCGC	2 cut(s)	44, 137
Kzo9I	GATC	2 cut(s)	75, 244
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	3 cut(s)	219, 302, 506
Lsp1109I	GCAGC	2 cut(s)	33, 656
LweI	GCATC	2 cut(s)	198, 737
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	391
MalI	GATC	2 cut(s)	77, 246
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	2 cut(s)	75, 244
MboII	GAAGA	3 cut(s)	626, 772, 881
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	55, 307
MluCI	AATT	6 cut(s)	124, 265, 279, 514, 670, 744
MluI	ACGCGT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	372, 380
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	872
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	249, 299
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	249, 299
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 50, 93, 167, 696, 922
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	2 cut(s)	75, 244
NlaIII	CATG	4 cut(s)	364, 598, 712, 929
NlaIV	GGNNCC	2 cut(s)	246, 304
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	929
PaeI	GCATGC	1 cut(s)	929
PceI	AGGCCT	2 cut(s)	274, 916
PciSI	GCTCTTC	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	48, 646
PshAI	GACNNNNGTC	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	943
Psp6I	CCWGG	2 cut(s)	247, 297
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	247, 297
PspN4I	GGNNCC	2 cut(s)	246, 304
PspPI	GGNCC	2 cut(s)	70, 472
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	3 cut(s)	390, 524, 769
RsaNI	GTAC	3 cut(s)	389, 523, 768
RseI	CAYNNNNRTG	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	1 cut(s)	872
SatI	GCNGC	2 cut(s)	47, 645
Sau3AI	GATC	2 cut(s)	75, 244
Sau96I	GGNCC	2 cut(s)	70, 472
ScaI	AGTACT	2 cut(s)	524, 769
ScrFI	CCNGG	2 cut(s)	249, 299
SduI	GDGCHC	2 cut(s)	55, 307
SfaNI	GCATC	2 cut(s)	198, 737
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	70, 472
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	6 cut(s)	124, 265, 279, 514, 670, 744
SseBI	AGGCCT	2 cut(s)	274, 916
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	341
StuI	AGGCCT	2 cut(s)	274, 916
StyD4I	CCNGG	2 cut(s)	247, 297
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	3 cut(s)	329, 500, 640
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	156, 796
TasI	AATT	6 cut(s)	124, 265, 279, 514, 670, 744
TatI	WGTACW	2 cut(s)	522, 767
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TscAI	CASTG	2 cut(s)	334, 636
TseI	GCWGC	2 cut(s)	46, 644
TspDTI	ATGAA	3 cut(s)	583, 627, 835
TspGWI	ACGGA	3 cut(s)	257, 842, 892
TspRI	CASTG	2 cut(s)	334, 636
VpaK11BI	GGWCC	2 cut(s)	70, 472
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	2 cut(s)	524, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.