Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Forward (+)

18000601 .. 18004043

Gene Structure 3443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG202000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCAGCAGGAATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTCGGCTACATAATGGTCCTGATCGTTGTCGGCCTAGTCGGCCTCACTTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGACGCCCTTATTGCTTTCCCGCTCTTGATTTTGTTCCACTTTCTGTTGGTGATGCTGTTGTGGAGCTACTCTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACCGAATTGGAGGCCTGAAATTGATGAGGAGGGAGGCCAGGGAGCCCCATTAGTGGGATCAGAATACAGTGGTGCAGGTCTAGTATCCAACCAATCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCTCCTCGTTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCGCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACACTGGGAACTGTTGCAGCCAGTTTTATCACATTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000254 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC FA_hydroxylase

Protein Analysis

222

Amino Acids

24.7

Weight (kDa)

7.56

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	129 - 212	2.9e-31	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	3 cut(s)	239, 252, 325
AcyI	GRCGYC	2 cut(s)	153, 159
AfaI	GTAC	2 cut(s)	390, 524
AfiI	CCNNNNNNNGG	2 cut(s)	313, 314
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	31, 466, 514
AjnI	CCWGG	2 cut(s)	247, 297
AluBI	AGCT	2 cut(s)	34, 222
AluI	AGCT	2 cut(s)	34, 222
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	3 cut(s)	239, 252, 325
AoxI	GGCC	4 cut(s)	85, 94, 272, 295
ApeKI	GCWGC	2 cut(s)	46, 644
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	46, 139
AspS9I	GGNCC	2 cut(s)	70, 472
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	70, 472
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	2 cut(s)	55, 307
BbvI	GCAGC	2 cut(s)	33, 656
BccI	CCATC	1 cut(s)	483
BceAI	ACGGC	2 cut(s)	57, 95
BciT130I	CCWGG	2 cut(s)	249, 299
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	89, 341
BfoI	RGCGCY	2 cut(s)	47, 140
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	47, 645
BlsI	GCNGC	2 cut(s)	48, 646
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	249, 299
Bme18I	GGWCC	2 cut(s)	70, 472
BmgT120I	GGNCC	2 cut(s)	70, 472
BmiI	GGNNCC	2 cut(s)	246, 304
BmrFI	CCNGG	2 cut(s)	249, 299
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	153, 159
BsaJI	CCNNGG	4 cut(s)	55, 145, 248, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 314
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	636, 648
BseBI	CCWGG	2 cut(s)	249, 299
BseDI	CCNNGG	4 cut(s)	55, 145, 248, 298
BseLI	CCNNNNNNNGG	2 cut(s)	313, 314
BseNI	ACTGG	2 cut(s)	636, 648
BseRI	GAGGAG	3 cut(s)	162, 302, 414
BseXI	GCAGC	2 cut(s)	33, 656
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	2 cut(s)	22, 354
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	87, 96, 274, 297
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	313, 314
BsmAI	GTCTC	1 cut(s)	551
BsnI	GGCC	4 cut(s)	87, 96, 274, 297
Bsp1286I	GDGCHC	2 cut(s)	55, 307
Bsp143I	GATC	3 cut(s)	75, 244, 317
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	87, 96, 274, 297
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	246, 304
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	3 cut(s)	239, 252, 325
BsrBI	CCGCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	636, 648
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	55, 145, 248, 298
BssMI	GATC	3 cut(s)	75, 244, 317
BssNI	GRCGYC	2 cut(s)	153, 159
Bst2UI	CCWGG	2 cut(s)	249, 299
Bst4CI	ACNGT	3 cut(s)	329, 500, 640
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	2 cut(s)	153, 159
BstC8I	GCNNGC	2 cut(s)	6, 51
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	2 cut(s)	47, 140
BstHHI	GCGC	2 cut(s)	46, 139
BstKTI	GATC	3 cut(s)	78, 247, 320
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	3 cut(s)	75, 244, 317
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 50, 93, 167
BstNI	CCWGG	2 cut(s)	249, 299
BstSCI	CCNGG	2 cut(s)	247, 297
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	33, 656
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	87, 96, 274, 297
BtsIMutI	CAGTG	2 cut(s)	334, 629
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	6, 51
CfoI	GCGC	2 cut(s)	46, 139
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	70, 472
CseI	GACGC	2 cut(s)	142, 167
Csp6I	GTAC	2 cut(s)	389, 523
CviAII	CATG	2 cut(s)	361, 595
CviQI	GTAC	2 cut(s)	389, 523
DpnI	GATC	3 cut(s)	77, 246, 319
DpnII	GATC	3 cut(s)	75, 244, 317
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco147I	AGGCCT	1 cut(s)	274
Eco24I	GRGCYC	2 cut(s)	55, 307
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	70, 472
EcoRII	CCWGG	2 cut(s)	247, 297
EcoRV	GATATC	1 cut(s)	621
EcoT38I	GRGCYC	2 cut(s)	55, 307
FaeI	CATG	2 cut(s)	364, 598
FaiI	YATR	5 cut(s)	65, 231, 362, 417, 596
FatI	CATG	2 cut(s)	360, 594
FauI	CCCGC	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	47, 645
FriOI	GRGCYC	2 cut(s)	55, 307
Fsp4HI	GCNGC	2 cut(s)	47, 645
FspBI	CTAG	2 cut(s)	89, 341
GlaI	GCGC	2 cut(s)	45, 138
GluI	GCNGC	2 cut(s)	47, 645
GsaI	CCCAGC	1 cut(s)	377
HaeII	RGCGCY	2 cut(s)	47, 140
HaeIII	GGCC	4 cut(s)	87, 96, 274, 297
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	2 cut(s)	142, 167
HhaI	GCGC	2 cut(s)	46, 139
Hin1I	GRCGYC	2 cut(s)	153, 159
Hin1II	CATG	2 cut(s)	364, 598
Hin6I	GCGC	2 cut(s)	44, 137
HinP1I	GCGC	2 cut(s)	44, 137
HincII	GTYRAC	2 cut(s)	157, 496
HindII	GTYRAC	2 cut(s)	157, 496
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	157, 496
Hpy188I	TCNGA	3 cut(s)	146, 322, 402
Hpy188III	TCNNGA	4 cut(s)	73, 181, 554, 624
Hpy8I	GTNNAC	2 cut(s)	157, 496
Hpy99I	CGWCG	3 cut(s)	116, 158, 161
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	329, 500, 640
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	39, 335, 408, 644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 50, 93, 167
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	2 cut(s)	153, 159
Hsp92II	CATG	2 cut(s)	364, 598
HspAI	GCGC	2 cut(s)	44, 137
Kzo9I	GATC	3 cut(s)	75, 244, 317
LmnI	GCTCC	3 cut(s)	219, 302, 506
Lsp1109I	GCAGC	2 cut(s)	33, 656
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	89, 341
MaeII	ACGT	1 cut(s)	391
MalI	GATC	3 cut(s)	77, 246, 319
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	3 cut(s)	75, 244, 317
MboII	GAAGA	1 cut(s)	626
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	55, 307
MluCI	AATT	4 cut(s)	124, 265, 279, 514
MluI	ACGCGT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	372, 380
MroXI	GAANNNNTTC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	249, 299
MvaI	CCWGG	2 cut(s)	249, 299
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 50, 93, 167
NdeII	GATC	3 cut(s)	75, 244, 317
NlaIII	CATG	2 cut(s)	364, 598
NlaIV	GGNNCC	2 cut(s)	246, 304
NmeAIII	GCCGAG	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	48, 646
Psp6I	CCWGG	2 cut(s)	247, 297
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	247, 297
PspN4I	GGNNCC	2 cut(s)	246, 304
PspPI	GGNCC	2 cut(s)	70, 472
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	390, 524
RsaNI	GTAC	2 cut(s)	389, 523
RseI	CAYNNNNRTG	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	47, 645
Sau3AI	GATC	3 cut(s)	75, 244, 317
Sau96I	GGNCC	2 cut(s)	70, 472
ScaI	AGTACT	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	249, 299
SduI	GDGCHC	2 cut(s)	55, 307
SetI	ASST	6 cut(s)	36, 224, 340, 394, 424, 458
SfaNI	GCATC	1 cut(s)	198
SfiI	GGCCNNNNNGGCC	1 cut(s)	93
SgrDI	CGTCGACG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	70, 472
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	124, 265, 279, 514
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	89, 341
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	247, 297
TaaI	ACNGT	3 cut(s)	329, 500, 640
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	156
TasI	AATT	4 cut(s)	124, 265, 279, 514
TatI	WGTACW	1 cut(s)	522
TscAI	CASTG	2 cut(s)	334, 636
TseI	GCWGC	2 cut(s)	46, 644
TspDTI	ATGAA	2 cut(s)	583, 627
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	334, 636
VpaK11BI	GGWCC	2 cut(s)	70, 472
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	89, 341
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.