Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Forward (+)

10877506 .. 10881338

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1079200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCTGATTCCCCAAAATCTTAATTTCAAATTCTTAGGGATTCCTGATTTTTCATGGTTTGATTCATCTTTGGAAAAAGGTCGATCAGGAGAAGCAGCAATGGCGTGGAACGCGTTCAAGTTATGTACGGCTCTGCGCGCCCTCGGCTACGTGATGGTGCTGGTGGTTGTCGCCATAGTCGGGCTCACCTACTACGCCGTCGTTTTGGTCAATTATTTACCTAGCATCCTTAGCGGAGGCGTCAATTTCGTCATTGCCTTCCCTCTCTTGATCTTGTTCCATTTTCTGTTGGTGATGCTGTTGTGGAGCTACTTTAATGTTGTTCTGACGGATCCTGGGCGCGTTCCACCAAATTGGAGGCCTGCAATTGATGAGGAGACGGGTGATGAAGCCCCATTGGTGGGATCAGACCAATCCACCATGGTCAGTGATCCAGCAAATCAAAAAATACGGTTTTGTCGGAAGTGCAACCACTATAAACCACCTCGTTGCCATCATTGTTCTGTTTGTGGGAGGTGTATATTGAAAATGGACCATCATTGCGTTTGGGTGGTCAACTGTGTTGGTGCACTGAATTACAAGTACTTCCTTCTCTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCACCTTATCATTATTCAAGTATTTTATGGCATTTTTTACTGAAGAGGAGATACCGGGAACATTGGGCACTGTTGCAGCTAGTTTTATCACATTTGTTTTGAACTTCGCATTTGCTTTGAGTGTTTTTGGCTTTATGATCATGCACCTATCATTGGTGGCGTCCAATACCACCACTATTGAGGCATACGAGAAGAAAGCCACTACTAAATGGCAGTATGACCTTGGTCGGAAGAAAAACTTTGAACAGGTGTTTGGGACGGATATGTGGTACTGGTTCATCCCTGCATATTCGGAGGAGGATTTAAGACGGATACCAGCTCTCCAGGGTATTGATTATCCAACAAGGCCCGAGTTGAATGCACTTCAGCCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

335

Amino Acids

38.08

Weight (kDa)

6.65

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	148 - 274	2.9e-39	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1003
AccII	CGCG	3 cut(s)	113, 138, 342
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	4 cut(s)	326, 339, 412, 425
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	690, 977
AcyI	GRCGYC	2 cut(s)	240, 788
AfaI	GTAC	3 cut(s)	127, 584, 899
AfiI	CCNNNNNNNGG	4 cut(s)	180, 400, 401, 781
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	7 cut(s)	28, 118, 526, 646, 730, 872, 985
AjnI	CCWGG	2 cut(s)	334, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AluBI	AGCT	3 cut(s)	309, 707, 947
AluI	AGCT	3 cut(s)	309, 707, 947
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	371, 611
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	4 cut(s)	326, 339, 412, 425
Ama87I	CYCGRG	1 cut(s)	977
AoxI	GGCC	2 cut(s)	359, 974
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	95, 704
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	3 cut(s)	138, 140, 342
AspS9I	GGNCC	2 cut(s)	532, 975
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	4 cut(s)	178, 304, 395, 622
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	1 cut(s)	532
BaeGI	GKGCMC	2 cut(s)	571, 698
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	107, 716
BccI	CCATC	3 cut(s)	148, 501, 543
BceAI	ACGGC	2 cut(s)	144, 182
BcgI	CGANNNNNNTGC	2 cut(s)	968, 1002
BciT130I	CCWGG	2 cut(s)	336, 953
BciVI	GTATCC	1 cut(s)	933
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	371, 611
BfaI	CTAG	2 cut(s)	222, 708
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	2 cut(s)	96, 705
BlsI	GCNGC	2 cut(s)	97, 706
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	3 cut(s)	336, 684, 953
Bme18I	GGWCC	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	977
BmgT120I	GGNCC	2 cut(s)	532, 975
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	3 cut(s)	336, 684, 953
BmsI	GCATC	2 cut(s)	234, 285
BoxI	GACNNNNGTC	1 cut(s)	852
BpmI	CTGGAG	1 cut(s)	935
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	240, 788
BsaJI	CCNNGG	5 cut(s)	142, 335, 420, 850, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 400, 401, 781
Bse1I	ACTGG	1 cut(s)	905
Bse3DI	GCAATG	3 cut(s)	105, 252, 538
BseBI	CCWGG	2 cut(s)	336, 953
BseDI	CCNNGG	5 cut(s)	142, 335, 420, 850, 952
BseGI	GGATG	2 cut(s)	225, 906
BseLI	CCNNNNNNNGG	4 cut(s)	180, 400, 401, 781
BseMI	GCAATG	3 cut(s)	105, 252, 538
BseNI	ACTGG	1 cut(s)	905
BsePI	GCGCGC	1 cut(s)	136
BseRI	GAGGAG	3 cut(s)	389, 689, 938
BseSI	GKGCMC	2 cut(s)	571, 698
BseXI	GCAGC	2 cut(s)	107, 716
Bsh1236I	CGCG	3 cut(s)	113, 138, 342
BshFI	GGCC	2 cut(s)	361, 976
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	4 cut(s)	180, 400, 401, 781
BsmAI	GTCTC	2 cut(s)	371, 611
BsmBI	CGTCTC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	898
BsmI	GAATGC	1 cut(s)	991
BsnI	GGCC	2 cut(s)	361, 976
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	3 cut(s)	186, 571, 698
Bsp143I	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	361, 976
BspFNI	CGCG	3 cut(s)	113, 138, 342
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	4 cut(s)	326, 339, 412, 425
BsrDI	GCAATG	3 cut(s)	105, 252, 538
BsrI	ACTGG	1 cut(s)	905
BssECI	CCNNGG	5 cut(s)	142, 335, 420, 850, 952
BssHII	GCGCGC	1 cut(s)	136
BssMI	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
BssNI	GRCGYC	2 cut(s)	240, 788
BssT1I	CCWWGG	2 cut(s)	420, 850
Bst2UI	CCWGG	2 cut(s)	336, 953
Bst4CI	ACNGT	3 cut(s)	453, 560, 700
Bst6I	CTCTTC	2 cut(s)	599, 666
BstACI	GRCGYC	2 cut(s)	240, 788
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	138, 363
BstDEI	CTNAG	2 cut(s)	34, 230
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	225, 906
BstFNI	CGCG	3 cut(s)	113, 138, 342
BstHHI	GCGC	3 cut(s)	138, 140, 342
BstKTI	GATC	6 cut(s)	86, 273, 334, 407, 433, 768
BstMAI	GTCTC	2 cut(s)	371, 611
BstMBI	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 137, 144, 231
BstNI	CCWGG	2 cut(s)	336, 953
BstPAI	GACNNNNGTC	1 cut(s)	852
BstSCI	CCNGG	3 cut(s)	334, 682, 951
BstSLI	GKGCMC	2 cut(s)	571, 698
BstUI	CGCG	3 cut(s)	113, 138, 342
BstV1I	GCAGC	2 cut(s)	107, 716
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	361, 976
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	225, 906
BtsIMutI	CAGTG	3 cut(s)	433, 569, 696
Cac8I	GCNNGC	2 cut(s)	138, 363
CfoI	GCGC	3 cut(s)	138, 140, 342
Cfr13I	GGNCC	2 cut(s)	532, 975
CseI	GACGC	2 cut(s)	229, 777
Csp6I	GTAC	3 cut(s)	126, 583, 898
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	3 cut(s)	54, 421, 769
CviQI	GTAC	3 cut(s)	126, 583, 898
DdeI	CTNAG	2 cut(s)	34, 230
DpnI	GATC	6 cut(s)	85, 272, 333, 406, 432, 767
DpnII	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
Eam1104I	CTCTTC	2 cut(s)	599, 666
EarI	CTCTTC	2 cut(s)	599, 666
Eco130I	CCWWGG	2 cut(s)	420, 850
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	690, 977
Eco88I	CYCGRG	1 cut(s)	977
EcoRII	CCWGG	2 cut(s)	334, 951
EcoT14I	CCWWGG	2 cut(s)	420, 850
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	420, 850
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	3 cut(s)	57, 424, 772
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	3 cut(s)	53, 420, 768
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	96, 705
FokI	GGATG	2 cut(s)	212, 893
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	96, 705
FspBI	CTAG	2 cut(s)	222, 708
GlaI	GCGC	3 cut(s)	137, 139, 341
GluI	GCNGC	2 cut(s)	96, 705
GsuI	CTGGAG	1 cut(s)	935
HaeIII	GGCC	2 cut(s)	361, 976
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	2 cut(s)	229, 777
HhaI	GCGC	3 cut(s)	138, 140, 342
Hin1I	GRCGYC	2 cut(s)	240, 788
Hin1II	CATG	3 cut(s)	57, 424, 772
Hin6I	GCGC	3 cut(s)	136, 138, 340
HinP1I	GCGC	3 cut(s)	136, 138, 340
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	7, 40, 62
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	4 cut(s)	178, 304, 395, 622
Hpy166II	GTNNAC	2 cut(s)	556, 569
Hpy188I	TCNGA	5 cut(s)	327, 409, 462, 858, 922
Hpy188III	TCNNGA	4 cut(s)	44, 87, 268, 614
Hpy8I	GTNNAC	2 cut(s)	556, 569
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	268, 599
HpyCH4III	ACNGT	3 cut(s)	453, 560, 700
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	365, 468, 569, 704, 772, 914, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 137, 144, 231
HpyF3I	CTNAG	2 cut(s)	34, 230
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	240, 788
Hsp92II	CATG	3 cut(s)	57, 424, 772
HspAI	GCGC	3 cut(s)	136, 138, 340
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	107, 716
LweI	GCATC	2 cut(s)	234, 285
MaeI	CTAG	2 cut(s)	222, 708
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	6 cut(s)	85, 272, 333, 406, 432, 767
MboI	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
MboII	GAAGA	4 cut(s)	586, 683, 832, 871
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	186, 571, 698
MluCI	AATT	7 cut(s)	22, 29, 211, 244, 352, 366, 574
MluI	ACGCGT	1 cut(s)	111
MmeI	TCCRAC	3 cut(s)	440, 836, 992
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	21, 315, 932
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	3 cut(s)	336, 684, 953
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	991
MvaI	CCWGG	2 cut(s)	336, 953
MvnI	CGCG	3 cut(s)	113, 138, 342
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 137, 144, 231
NciI	CCSGG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
NlaIII	CATG	3 cut(s)	57, 424, 772
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	628
PauI	GCGCGC	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	7, 40, 62
PkrI	GCNGC	2 cut(s)	97, 706
Ppu21I	YACGTR	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	334, 951
PspGI	CCWGG	2 cut(s)	334, 951
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	532, 975
PsuI	RGATCY	1 cut(s)	331
PteI	GCGCGC	1 cut(s)	136
RsaI	GTAC	3 cut(s)	127, 584, 899
RsaNI	GTAC	3 cut(s)	126, 583, 898
SaqAI	TTAA	3 cut(s)	21, 315, 932
SatI	GCNGC	2 cut(s)	96, 705
Sau3AI	GATC	6 cut(s)	83, 270, 331, 404, 430, 765
Sau96I	GGNCC	2 cut(s)	532, 975
ScaI	AGTACT	1 cut(s)	584
ScrFI	CCNGG	3 cut(s)	336, 684, 953
SduI	GDGCHC	3 cut(s)	186, 571, 698
SfaNI	GCATC	2 cut(s)	234, 285
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	7 cut(s)	22, 29, 211, 244, 352, 366, 574
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	222, 708
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	3 cut(s)	334, 682, 951
StyI	CCWWGG	2 cut(s)	420, 850
TaaI	ACNGT	3 cut(s)	453, 560, 700
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	82
TasI	AATT	7 cut(s)	22, 29, 211, 244, 352, 366, 574
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	3 cut(s)	7, 40, 62
Tru1I	TTAA	3 cut(s)	21, 315, 932
Tru9I	TTAA	3 cut(s)	21, 315, 932
TscAI	CASTG	3 cut(s)	433, 576, 703
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	2 cut(s)	95, 704
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	42, 54, 402, 895
TspGWI	ACGGA	3 cut(s)	344, 902, 952
TspRI	CASTG	3 cut(s)	433, 576, 703
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	222, 708
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.