Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006531

Physical Location & Seq

Genomic Coordinates Forward (+)

7481616 .. 7485459

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGTGGAACGCGTTCAAGTTATGTACGGCTCTGCGCGCCCTCGGCTACGTGATGGTGCTGGTGGTTGTCGCCATAGTCGGGCTCACCTACTACGCCGTCGTTTTGGTCAATTATTTACCTAGCATCCTTAGCGGAGGTGTCAATTTCGTCATTGCCTTCCCTCTCTTGATCTTGTTCCATTTTCTGTTGGTGATGCTGTTGTGGAGCTACTTTAATGTTGTTCTGACGGATCCTGGGCGCGTTCCACCAAATTGGAGGCCTGCAATCGATGAGGAGACAGGTGATGAAGCCCCATTGGTGGGATCAGACCAATCCACCATGGTCAGTGATCCAGCAAATCAAAAAATACGGTTTTGTCGGAAGTGCAACCACTATAAGCCACCCCGTTGCCATCATTGTTCTGTTTGTGGGAGGTGTATATTGAAAATGGACCATCATTGCGTTTGGGTGGTCAACTGTGTTGGTGCACTGAATTACAAGTACTTCCTTCTCTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCACCTTATCATTATTCAAGTATTTTATGGCATTTTTTACTGAAGAGGAGATACCGGGAACATTGGGCACTGTTGCAGCTAGTTTTATCACATTTGTTTTGAACTTCGCATTTGCTTTGAGTGTTTTTGGCTTCATGATCATGCACCTATCATTGGTGGCGTCCAATACCACCACTATTGAGGCGTACGAGAAGAAGGCCACTACTAAATGGCAGTATGACCTTGGTCGGAAGAAAAACTTTGAACAGGTGTTTGGGACGGATATGTGGTACTGGTTCATCCCTGCATATTCGGAGGAGGATTTAAGACGGATACCAGCTCTCCAGGGTATTGATTATCCAACAAGGCCCGAGTTGAATGCACTTCAGCCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

302

Amino Acids

34.38

Weight (kDa)

7.02

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22750
fragaria_vesca	FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750 FvH4_5g00750
malus_domestica	MD04G1079200.v1.1
prunus_persica	Prupe.5G080000_v2.0.a1 Prupe.5G080000_v2.0.a1
pyrus_communis	pycom04g07100
rosa_chinensis	RchiOBHm_Chr7g0201481
rosa_laevigata	RLG00000003673
rosa_multiflora	Rmu_co8345589.1_g000001 Rmu_sc0002046.1_g000006 Rmu_sc0017656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00255270
rosa_rugosa	Rorug07G0063900
rosa_samantha	Rh7AG190800 Rh7BG193000 Rh7CG202000 Rh7DG195500
rosa_wichuraiana	Rw7G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	904
AccII	CGCG	3 cut(s)	14, 39, 243
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	4 cut(s)	227, 240, 313, 326
AcuI	CTGAAG	2 cut(s)	591, 878
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	4 cut(s)	28, 485, 716, 800
AfiI	CCNNNNNNNGG	4 cut(s)	81, 301, 302, 682
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	6 cut(s)	19, 427, 547, 631, 773, 886
AjnI	CCWGG	2 cut(s)	235, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	3 cut(s)	210, 608, 848
AluI	AGCT	3 cut(s)	210, 608, 848
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	272, 512
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	4 cut(s)	227, 240, 313, 326
Ama87I	CYCGRG	1 cut(s)	878
AoxI	GGCC	3 cut(s)	260, 726, 875
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	3 cut(s)	39, 41, 243
AspS9I	GGNCC	2 cut(s)	433, 876
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	79, 205, 296, 523
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	2 cut(s)	472, 599
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	49, 402, 444
BceAI	ACGGC	2 cut(s)	45, 83
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciT130I	CCWGG	2 cut(s)	237, 854
BciVI	GTATCC	1 cut(s)	834
BclI	TGATCA	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	2 cut(s)	272, 512
BfaI	CTAG	2 cut(s)	123, 609
BfuI	GTATCC	1 cut(s)	834
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	237, 585, 854
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	433, 876
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	237, 585, 854
BmsI	GCATC	2 cut(s)	135, 186
BoxI	GACNNNNGTC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	836
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	43, 236, 321, 751, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 301, 302, 682
Bse1I	ACTGG	1 cut(s)	806
Bse3DI	GCAATG	2 cut(s)	153, 439
BseBI	CCWGG	2 cut(s)	237, 854
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	43, 236, 321, 751, 853
BseGI	GGATG	2 cut(s)	126, 807
BseLI	CCNNNNNNNGG	4 cut(s)	81, 301, 302, 682
BseMI	GCAATG	2 cut(s)	153, 439
BseNI	ACTGG	1 cut(s)	806
BsePI	GCGCGC	1 cut(s)	37
BseRI	GAGGAG	3 cut(s)	290, 590, 839
BseSI	GKGCMC	2 cut(s)	472, 599
BseXI	GCAGC	1 cut(s)	617
Bsh1236I	CGCG	3 cut(s)	14, 39, 243
BshFI	GGCC	3 cut(s)	262, 728, 877
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	878
BsiSI	CCGG	1 cut(s)	584
BsiWI	CGTACG	1 cut(s)	714
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	4 cut(s)	81, 301, 302, 682
BsmAI	GTCTC	2 cut(s)	272, 512
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	3 cut(s)	262, 728, 877
BsoBI	CYCGRG	1 cut(s)	878
Bsp1286I	GDGCHC	3 cut(s)	87, 472, 599
Bsp143I	GATC	5 cut(s)	171, 232, 305, 331, 666
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	262, 728, 877
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	3 cut(s)	14, 39, 243
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	4 cut(s)	227, 240, 313, 326
BsrDI	GCAATG	2 cut(s)	153, 439
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	5 cut(s)	43, 236, 321, 751, 853
BssHII	GCGCGC	1 cut(s)	37
BssMI	GATC	5 cut(s)	171, 232, 305, 331, 666
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	2 cut(s)	321, 751
Bst2UI	CCWGG	2 cut(s)	237, 854
Bst4CI	ACNGT	3 cut(s)	354, 461, 601
Bst6I	CTCTTC	2 cut(s)	500, 567
BstACI	GRCGYC	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	39, 264
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	126, 807
BstFNI	CGCG	3 cut(s)	14, 39, 243
BstHHI	GCGC	3 cut(s)	39, 41, 243
BstKTI	GATC	5 cut(s)	174, 235, 308, 334, 669
BstMAI	GTCTC	2 cut(s)	272, 512
BstMBI	GATC	5 cut(s)	171, 232, 305, 331, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 38, 45, 132
BstNI	CCWGG	2 cut(s)	237, 854
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	3 cut(s)	235, 583, 852
BstSLI	GKGCMC	2 cut(s)	472, 599
BstUI	CGCG	3 cut(s)	14, 39, 243
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	262, 728, 877
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	126, 807
BtsIMutI	CAGTG	3 cut(s)	334, 470, 597
Cac8I	GCNNGC	2 cut(s)	39, 264
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	3 cut(s)	39, 41, 243
Cfr13I	GGNCC	2 cut(s)	433, 876
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	4 cut(s)	27, 484, 715, 799
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	3 cut(s)	322, 664, 670
CviQI	GTAC	4 cut(s)	27, 484, 715, 799
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	5 cut(s)	173, 234, 307, 333, 668
DpnII	GATC	5 cut(s)	171, 232, 305, 331, 666
Eam1104I	CTCTTC	2 cut(s)	500, 567
EarI	CTCTTC	2 cut(s)	500, 567
Eco130I	CCWWGG	2 cut(s)	321, 751
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	591, 878
Eco88I	CYCGRG	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	235, 852
EcoT14I	CCWWGG	2 cut(s)	321, 751
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	2 cut(s)	321, 751
FaeI	CATG	3 cut(s)	325, 667, 673
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	3 cut(s)	321, 663, 669
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	2 cut(s)	113, 794
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	2 cut(s)	123, 609
GlaI	GCGC	3 cut(s)	38, 40, 242
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	3 cut(s)	262, 728, 877
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	3 cut(s)	39, 41, 243
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	3 cut(s)	325, 667, 673
Hin6I	GCGC	3 cut(s)	37, 39, 241
HinP1I	GCGC	3 cut(s)	37, 39, 241
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	4 cut(s)	79, 205, 296, 523
Hpy166II	GTNNAC	2 cut(s)	457, 470
Hpy188I	TCNGA	5 cut(s)	228, 310, 363, 759, 823
Hpy188III	TCNNGA	3 cut(s)	169, 515, 664
Hpy8I	GTNNAC	2 cut(s)	457, 470
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	169, 500, 718
HpyCH4III	ACNGT	3 cut(s)	354, 461, 601
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	7 cut(s)	266, 369, 470, 605, 673, 815, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 38, 45, 132
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	325, 667, 673
HspAI	GCGC	3 cut(s)	37, 39, 241
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	171, 232, 305, 331, 666
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	135, 186
MaeI	CTAG	2 cut(s)	123, 609
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	5 cut(s)	173, 234, 307, 333, 668
MboI	GATC	5 cut(s)	171, 232, 305, 331, 666
MboII	GAAGA	4 cut(s)	487, 584, 733, 772
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	87, 472, 599
MluCI	AATT	4 cut(s)	112, 145, 253, 475
MluI	ACGCGT	1 cut(s)	12
MmeI	TCCRAC	3 cut(s)	341, 737, 893
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	216, 833
MslI	CAYNNNNRTG	1 cut(s)	668
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	3 cut(s)	237, 585, 854
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	2 cut(s)	237, 854
MvnI	CGCG	3 cut(s)	14, 39, 243
MwoI	GCNNNNNNNGC	4 cut(s)	11, 38, 45, 132
NciI	CCSGG	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	5 cut(s)	171, 232, 305, 331, 666
NlaIII	CATG	3 cut(s)	325, 667, 673
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	663
PauI	GCGCGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	14
Pfl23II	CGTACG	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	607
Ppu21I	YACGTR	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	753
PsiI	TTATAA	1 cut(s)	904
Psp6I	CCWGG	2 cut(s)	235, 852
PspGI	CCWGG	2 cut(s)	235, 852
PspLI	CGTACG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	433, 876
PsuI	RGATCY	1 cut(s)	232
PteI	GCGCGC	1 cut(s)	37
RsaI	GTAC	4 cut(s)	28, 485, 716, 800
RsaNI	GTAC	4 cut(s)	27, 484, 715, 799
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	216, 833
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	5 cut(s)	171, 232, 305, 331, 666
Sau96I	GGNCC	2 cut(s)	433, 876
ScaI	AGTACT	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	237, 585, 854
SduI	GDGCHC	3 cut(s)	87, 472, 599
SfaNI	GCATC	2 cut(s)	135, 186
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	4 cut(s)	112, 145, 253, 475
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	123, 609
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	3 cut(s)	235, 583, 852
StyI	CCWWGG	2 cut(s)	321, 751
TaaI	ACNGT	3 cut(s)	354, 461, 601
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	112, 145, 253, 475
TatI	WGTACW	1 cut(s)	483
Tru1I	TTAA	2 cut(s)	216, 833
Tru9I	TTAA	2 cut(s)	216, 833
TscAI	CASTG	3 cut(s)	334, 477, 604
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	303, 652, 796
TspGWI	ACGGA	3 cut(s)	245, 803, 853
TspRI	CASTG	3 cut(s)	334, 477, 604
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	123, 609
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.