AT4G24250

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011715
Physical Location & Seq
Reverse (-)
12574719 .. 12577583
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24250.1

Sequence Viewer

Length: 1437 bp
ATGGCAGAAGCAAGGTCTGGTTCTCTTGAGTATACACCCACATGGGTCGTTGCGTTTATCTGTTTCATCATTGTTCTCTTATCTCTTCTCGCTGAACGTGGTCTTCATCATCTTGGAAAGTGTCTGAAGCGTAGGCAACAAGATGCCTTGTTCGAAGCCTTGCAGAAACTCAAAGAAGAATTGATGCTTCTTGGATTTATCTCCCTGATGTTAACGGTATCTCAGGCCGCAATTCGGCATATCTGTGTCCCACCAGCTCTTGTAAACAACATGTTTCCCTGTAAGAAGCCATTGGAGGAGCATCATGCGCCTAAATCATCTCATTCGATTATCAACAATGCACGACATCTCCTTTCAACAGGAGAAAGTCCAGACCATTGTGCTGCCAAGGGGCAGGTTCCATTAGTATCTGTGGAAGCGTTGCATCAACTCCATATCTTCATCTTTGTGCTAGCGGTTTTTCACGTCATCTTCTGCGCCTCAACCATGGTTCTTGGAGGAGCAAGAATACAACAATGGAAACATTGGGAGGATTGGTTCAAGAAACGTCCTTCTCAAAAGGGCACTACAAGGCGTGGTCATCATGCTCATGCTCACGAGTTATTCAGTGCAAATCACGAGTTCTTCGAGATGCATGCTGGAGGATTTTGGAGAAGATCTGTTGTCATCAGCTGGGTGAGATCATTCTTCAAGCAGTTTTATGGTTCTGTCACCAAATCAGAATACATAGCTCTGCGACAAGCATTCATCATGAGTCATTGCCGCACAAACCCATCATTTGATTTTCACAAGTACATGCTAAGAACACTGGAAATAGATTTCAAGAAAGTTGTGAGCATAAGTTGGTATCTATGGCTCTTTGTCGTCGTCTTTTTGCTGCTCAATGTTGGAGGATGGAACACTTACTTCTGGTTATCTTTCTTGCCTTTGATTTTGTTACTAATGGTGGGTGCCAAGTTGGAATATATAATAAGTAGCTTAGCTTTGGATGTTTCCGAGAAGCGAAGCCGCGCGGAAGAAGCAGTGATCACACCTTCTGATGAACTCTTTTGGTTCCATAGGCCAGGCATTGTTCTCCAACTCATCCATTTCATTCTCTTTCAGAATTCATTTGAGATTGCTTTCTTCTTCTGGATTTTGTTCACATACGGAATACATTCATGTATCATGGAGAAACTAGGCTACCTTATCCCAAGACTCGTCATGGGAGTGTTAGTCCAAGTGCTTTGCAGTTACAGCACATTACCACTATATGCCCTTGTTACACAAATGGGTAGCAAATTCAAGAAAGGGATATTCGACAATGTAGTACAGTCCACACTGGAAGGATGGTTAGAAGATACGAGGAACAGAGGCGAATCCACGAGCGAGGCTCATAGGATAGAGATGCAACCTACAACTCCTGAATCTTATAATGTCCAAAGTGAAAACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

478

Amino Acids

55.07

Weight (kDa)

8.85

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 468 3e-176 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1413
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 950
AccI GTMKAC 1 cut(s) 32
AccII CGCG 2 cut(s) 1011, 1013
AciI CCGC 5 cut(s) 228, 455, 763, 1009, 1013
AcsI RAATTY 2 cut(s) 1105, 1280
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 2 cut(s) 794, 1311
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 5 cut(s) 357, 541, 691, 823, 1285
AjiI CACGTC 1 cut(s) 466
AjnI CCWGG 1 cut(s) 1063
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 5 cut(s) 257, 672, 731, 978, 983
AluI AGCT 5 cut(s) 257, 672, 731, 978, 983
AoxI GGCC 2 cut(s) 225, 1061
ApeKI GCWGC 2 cut(s) 383, 877
ApoI RAATTY 2 cut(s) 1105, 1280
Asp700I GAANNNNTTC 1 cut(s) 1156
AspLEI GCGC 3 cut(s) 310, 479, 1013
AsuHPI GGTGA 2 cut(s) 688, 703
AsuII TTCGAA 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 950
BauI CACGAG 3 cut(s) 596, 617, 1363
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 370, 864
BccI CCATC 3 cut(s) 781, 888, 1323
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 1065
BclI TGATCA 1 cut(s) 1026
BfaI CTAG 2 cut(s) 452, 1178
BfuAI ACCTGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 656
BisI GCNGC 5 cut(s) 228, 384, 763, 878, 1009
BlpI GCTNAGC 1 cut(s) 979
BlsI GCNGC 5 cut(s) 229, 385, 764, 879, 1010
Bme1390I CCNGG 1 cut(s) 1065
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 399, 952, 1055
BmrFI CCNGG 1 cut(s) 1065
BmsI GCATC 6 cut(s) 133, 174, 310, 433, 621, 1377
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 1357, 1389
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 979
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 387, 486
BsaXI ACNNNNNCTCC 6 cut(s) 333, 363, 521, 551, 1200, 1230
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 813, 1326
Bse3DI GCAATG 1 cut(s) 757
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 2 cut(s) 387, 486
BseGI GGATG 4 cut(s) 899, 994, 1083, 1334
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 813, 1326
BseRI GAGGAG 2 cut(s) 311, 513
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 2 cut(s) 370, 864
BseYI CCCAGC 1 cut(s) 672
Bsh1236I CGCG 2 cut(s) 1011, 1013
BshFI GGCC 2 cut(s) 227, 1063
BshNI GGYRCC 1 cut(s) 950
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 2 cut(s) 227, 1063
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 3 cut(s) 656, 680, 1026
Bsp1720I GCTNAGC 1 cut(s) 979
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 5 cut(s) 228, 455, 763, 1009, 1013
BspANI GGCC 2 cut(s) 227, 1063
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 2 cut(s) 1011, 1013
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 399, 952, 1055
BspMI ACCTGC 1 cut(s) 385
BspOI GCTAGC 1 cut(s) 455
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 757
BsrI ACTGG 2 cut(s) 813, 1326
BssECI CCNNGG 2 cut(s) 387, 486
BssMI GATC 3 cut(s) 656, 680, 1026
BssNAI GTATAC 1 cut(s) 33
BssSI CACGAG 3 cut(s) 596, 617, 1363
BssT1I CCWWGG 2 cut(s) 387, 486
Bst1107I GTATAC 1 cut(s) 33
Bst2BI CACGAG 3 cut(s) 596, 617, 1363
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 2 cut(s) 217, 1314
Bst6I CTCTTC 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 453, 636
BstDEI CTNAG 3 cut(s) 222, 800, 979
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 4 cut(s) 899, 994, 1083, 1334
BstFNI CGCG 2 cut(s) 1011, 1013
BstHHI GCGC 3 cut(s) 310, 479, 1013
BstKTI GATC 3 cut(s) 659, 683, 1029
BstMBI GATC 3 cut(s) 656, 680, 1026
BstMWI GCNNNNNNNGC 3 cut(s) 307, 1019, 1236
BstNI CCWGG 1 cut(s) 1065
BstNSI RCATGY 3 cut(s) 274, 638, 799
BstSCI CCNGG 1 cut(s) 1063
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 2 cut(s) 1011, 1013
BstV1I GCAGC 2 cut(s) 370, 864
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 227, 1063
BtgI CCRYGG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 4 cut(s) 899, 994, 1083, 1334
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 4 cut(s) 613, 806, 1029, 1319
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 453, 636
CciI TCATGA 1 cut(s) 750
CfoI GCGC 3 cut(s) 310, 479, 1013
Csp6I GTAC 2 cut(s) 793, 1310
CviQI GTAC 2 cut(s) 793, 1310
DdeI CTNAG 3 cut(s) 222, 800, 979
DpnI GATC 3 cut(s) 658, 682, 1028
DpnII GATC 3 cut(s) 656, 680, 1026
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 387, 486
Eco57I CTGAAG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 1063
EcoT14I CCWWGG 2 cut(s) 387, 486
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 387, 486
FaqI GGGAC 1 cut(s) 233
FbaI TGATCA 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 228, 384, 763, 878, 1009
FokI GGATG 4 cut(s) 906, 1001, 1070, 1341
Fsp4HI GCNGC 5 cut(s) 228, 384, 763, 878, 1009
FspBI CTAG 2 cut(s) 452, 1178
GlaI GCGC 3 cut(s) 309, 478, 1012
GluI GCNGC 5 cut(s) 228, 384, 763, 878, 1009
GsaI CCCAGC 1 cut(s) 676
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 2 cut(s) 227, 1063
HhaI GCGC 3 cut(s) 310, 479, 1013
Hin6I GCGC 3 cut(s) 308, 477, 1011
HinP1I GCGC 3 cut(s) 308, 477, 1011
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 4 cut(s) 754, 1197, 1358, 1406
HpaI GTTAAC 1 cut(s) 213
HphI GGTGA 2 cut(s) 688, 703
Hpy166II GTNNAC 5 cut(s) 33, 213, 265, 1143, 1317
Hpy188I TCNGA 5 cut(s) 126, 721, 997, 1039, 1104
Hpy8I GTNNAC 5 cut(s) 33, 213, 265, 1143, 1317
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 3 cut(s) 561, 1044, 1319
HpyCH4III ACNGT 2 cut(s) 217, 1314
HpyCH4IV ACGT 3 cut(s) 97, 465, 547
HpyCH4V TGCA 7 cut(s) 163, 341, 424, 611, 634, 1230, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 1019, 1236
HpyF3I CTNAG 3 cut(s) 222, 800, 979
HpySE526I ACGT 3 cut(s) 97, 465, 547
HspAI GCGC 3 cut(s) 308, 477, 1011
Ksp22I TGATCA 1 cut(s) 1026
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 3 cut(s) 656, 680, 1026
LmnI GCTCC 2 cut(s) 298, 500
Lsp1109I GCAGC 2 cut(s) 370, 864
LweI GCATC 6 cut(s) 133, 174, 310, 433, 621, 1377
MaeI CTAG 2 cut(s) 452, 1178
MaeII ACGT 3 cut(s) 97, 465, 547
MaeIII GTNAC 4 cut(s) 709, 936, 1232, 1261
MalI GATC 3 cut(s) 658, 682, 1028
MboI GATC 3 cut(s) 656, 680, 1026
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 4 cut(s) 179, 231, 1105, 1280
MlyI GAGTC 2 cut(s) 763, 1191
MmeI TCCRAC 3 cut(s) 868, 939, 1102
MnlI CCTC 9 cut(s) 289, 490, 491, 523, 635, 884, 1338, 1346, 1363
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 1156
MseI TTAA 2 cut(s) 212, 1435
MslI CAYNNNNRTG 5 cut(s) 40, 243, 446, 588, 1208
MspA1I CMGCKG 1 cut(s) 672
MspR9I CCNGG 1 cut(s) 1065
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 1065
MvnI CGCG 2 cut(s) 1011, 1013
MwoI GCNNNNNNNGC 3 cut(s) 307, 1019, 1236
NcoI CCATGG 1 cut(s) 486
NdeII GATC 3 cut(s) 656, 680, 1026
NheI GCTAGC 1 cut(s) 451
NlaIV GGNNCC 3 cut(s) 399, 952, 1055
NmuCI GTSAC 1 cut(s) 709
NsiI ATGCAT 1 cut(s) 636
NspI RCATGY 3 cut(s) 274, 638, 799
NspV TTCGAA 1 cut(s) 153
PaeI GCATGC 1 cut(s) 638
PagI TCATGA 1 cut(s) 750
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 1 cut(s) 1156
PfeI GAWTC 2 cut(s) 1358, 1406
PkrI GCNGC 5 cut(s) 229, 385, 764, 879, 1010
PleI GAGTC 2 cut(s) 762, 1191
PpsI GAGTC 2 cut(s) 762, 1191
PscI ACATGT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 1413
Psp6I CCWGG 1 cut(s) 1063
PspFI CCCAGC 1 cut(s) 672
PspGI CCWGG 1 cut(s) 1063
PspN4I GGNNCC 3 cut(s) 399, 952, 1055
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 672
RsaI GTAC 2 cut(s) 794, 1311
RsaNI GTAC 2 cut(s) 793, 1310
RseI CAYNNNNRTG 5 cut(s) 40, 243, 446, 588, 1208
SaqAI TTAA 2 cut(s) 212, 1435
SatI GCNGC 5 cut(s) 228, 384, 763, 878, 1009
Sau3AI GATC 3 cut(s) 656, 680, 1026
SchI GAGTC 2 cut(s) 763, 1191
ScrFI CCNGG 1 cut(s) 1065
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 6 cut(s) 133, 174, 310, 433, 621, 1377
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 5 cut(s) 40, 243, 446, 588, 1208
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 638
Sse9I AATT 4 cut(s) 179, 231, 1105, 1280
SsiI CCGC 5 cut(s) 228, 455, 763, 1009, 1013
SspMI CTAG 2 cut(s) 452, 1178
StyD4I CCNGG 1 cut(s) 1063
StyI CCWWGG 2 cut(s) 387, 486
TaaI ACNGT 2 cut(s) 217, 1314
TaiI ACGT 3 cut(s) 100, 468, 550
TaqI TCGA 4 cut(s) 153, 326, 627, 1299
TasI AATT 4 cut(s) 179, 231, 1105, 1280
TatI WGTACW 2 cut(s) 792, 1309
TauI GCSGC 3 cut(s) 230, 765, 1011
TfiI GAWTC 2 cut(s) 1358, 1406
Tru1I TTAA 2 cut(s) 212, 1435
Tru9I TTAA 2 cut(s) 212, 1435
TscAI CASTG 4 cut(s) 613, 813, 1029, 1326
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 383, 877
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 8 cut(s) 55, 95, 430, 736, 1056, 1081, 1098, 1149
TspGWI ACGGA 1 cut(s) 1164
TspRI CASTG 4 cut(s) 613, 813, 1029, 1326
XapI RAATTY 2 cut(s) 1105, 1280
XceI RCATGY 3 cut(s) 274, 638, 799
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 1156
XspI CTAG 2 cut(s) 452, 1178
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.