Rroxscaffold_3G00241290

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011715
Physical Location & Seq
Forward (+)
33539192 .. 33544031
4840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241290.1

Sequence Viewer

Length: 1101 bp
ATGGCAGAAGAAGAACTCAGCAGCTCTTTAGAGTTTACTCCAACATGGGTGGTAGCAGGTGTTTGCTTTGTCATTGTTCTGTTATCTCTTTTGGCCGAGCGTGGTCTTCATAAACTTGGAAAGTACTTGCTGAATGAGAAACAAGATGCACTATATGAAGCCTTACAAAAACTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTCCCTTCTGCTAACTGTAACTCAACGTTCCATAAGCCGCATATGCATCCCTGCCCATGTAGCAACTCACATGTTACCATGTAAAAGGGAAACTGCTGAGCACAAAACCCCTGCACATTACTTTCTTAATCACTCTACAAACAATGGTCGTCGCCTTCTGTCTTCAGAAACAACTTCAGATCACTGTCAGCTCAAGATACGACAATGGAAGCGCTGGGAGGATTCCATCCAGAATGAGCGACGAAGTGGTCAAAGTACTGCTCACGTGCGTCATCACCATCATGAGTTCTTGAAAGAACGTGCAGATGGATATTGGAGAAGAGCAGCTATTGTAGGTTGGATGATAGCATTCTTCAAACAATTTTATGGTTCTGTCACTAAGTCAGACTACATTGCACTGCGGCAAGGGTTTATCAAGGAGCACTGCCCTCGAAATCCTGATTTTGATTTTCACAAATACATGATGCGGACACTTGAAATTGATTTTAGGAAGATTGTTGGGATCAGAGCACCTATGGAATTCACTCATGCATCATGGAAAAGTTGGGCTATGTCATCGCAAGACTTTTTATGGGGTAATATTCCTACTCCTATTGTGATAGTTCAAGTGCTTTGCAGTTACAGCACCCTACCATTGTATGTTATCGTCACCCAGATGGGTAGCATGTTCAAGGAGGGAATGTTCGATGAAATGACACGTGGTGCCATCGGTCTATGGGCTGGAGACGCAATAAGTAGACGTGACGATAGCAAGCAATCCTCCTCACATAGTATGCACAAAATGATCAACAATGAAGCCTCCACAACTGTCGATGTTGCAGAACAAGAAATGGTTGTCATGGAAAGAACTATAAATGTGCTCCCTTGTCAAGTCCAGCCACCTTCTTCATCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

366

Amino Acids

42.08

Weight (kDa)

8.4

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 128 2.1e-38 Mlo family
Mlo PF03094 123 - 240 9.3e-34 Mlo family
Mlo PF03094 267 - 334 1.5e-16 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 940
AciI CCGC 3 cut(s) 241, 604, 670
AclI AACGTT 1 cut(s) 229
AclWI GGATC 1 cut(s) 713
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 722
AcuI CTGAAG 2 cut(s) 351, 363
AcvI CACGTG 2 cut(s) 469, 902
AdeI CACNNNGTG 1 cut(s) 905
AfaI GTAC 2 cut(s) 125, 460
AfeI AGCGCT 1 cut(s) 416
AflIII ACRYGT 2 cut(s) 273, 899
AgsI TTSAA 5 cut(s) 496, 559, 680, 809, 874
AjiI CACGTC 1 cut(s) 944
AloI GAACNNNNNNTCC 2 cut(s) 869, 901
AluBI AGCT 3 cut(s) 24, 394, 530
AluI AGCT 3 cut(s) 24, 394, 530
Alw21I GWGCWC 4 cut(s) 306, 627, 715, 1065
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 416
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 21, 527
ApoI RAATTY 1 cut(s) 722
AspLEI GCGC 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 470, 844
BanI GGYRCC 1 cut(s) 905
BbrPI CACGTG 2 cut(s) 469, 902
BbsI GAAGAC 2 cut(s) 98, 357
Bbv12I GWGCWC 4 cut(s) 306, 627, 715, 1065
BbvI GCAGC 2 cut(s) 33, 539
BccI CCATC 5 cut(s) 437, 489, 503, 853, 917
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BclI TGATCA 1 cut(s) 987
BcoDI GTCTC 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 4 cut(s) 22, 241, 528, 605
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 4 cut(s) 23, 242, 529, 606
BmcAI AGTACT 2 cut(s) 125, 460
BmgBI CACGTC 1 cut(s) 944
BmiI GGNNCC 1 cut(s) 907
BmsI GCATC 5 cut(s) 136, 177, 258, 657, 743
BpiI GAAGAC 2 cut(s) 98, 357
BpmI CTGGAG 1 cut(s) 945
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 380
BsaAI YACGTR 2 cut(s) 469, 902
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bse3DI GCAATG 1 cut(s) 594
BseGI GGATG 4 cut(s) 249, 429, 549, 1091
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 31, 291
BseRI GAGGAG 1 cut(s) 955
BseXI GCAGC 2 cut(s) 33, 539
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 2 cut(s) 300, 525
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 4 cut(s) 306, 627, 715, 1065
BsmAI GTCTC 1 cut(s) 921
BsmBI CGTCTC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 4 cut(s) 306, 627, 715, 1065
Bsp143I GATC 3 cut(s) 382, 705, 987
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 3 cut(s) 241, 604, 670
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 30, 292
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 713
BspQI GCTCTTC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 905
BsrDI GCAATG 1 cut(s) 594
BssMI GATC 3 cut(s) 382, 705, 987
Bst4CI ACNGT 3 cut(s) 220, 389, 1012
Bst6I CTCTTC 1 cut(s) 517
BstBAI YACGTR 2 cut(s) 469, 902
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 17, 300, 582, 1098
BstF5I GGATG 4 cut(s) 249, 429, 549, 1091
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 3 cut(s) 385, 708, 990
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 3 cut(s) 382, 705, 987
BstMWI GCNNNNNNNGC 4 cut(s) 246, 263, 825, 929
BstNSI RCATGY 2 cut(s) 277, 871
BstV1I GCAGC 2 cut(s) 33, 539
BstV2I GAAGAC 2 cut(s) 98, 357
BsuRI GGCC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 744
BtrI CACGTC 1 cut(s) 944
BtsCI GGATG 4 cut(s) 249, 429, 549, 1091
BtsI GCAGTG 2 cut(s) 599, 625
BtsIMutI CAGTG 3 cut(s) 385, 599, 625
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 956
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 417
CseI GACGC 2 cut(s) 461, 938
Csp6I GTAC 2 cut(s) 124, 459
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviQI GTAC 2 cut(s) 124, 459
DdeI CTNAG 4 cut(s) 17, 300, 582, 1098
DpnI GATC 3 cut(s) 384, 707, 989
DpnII GATC 3 cut(s) 382, 705, 987
DraIII CACNNNGTG 1 cut(s) 905
DrdI GACNNNNNNGTC 1 cut(s) 450
DseDI GACNNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco47III AGCGCT 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 351, 363
Eco72I CACGTG 2 cut(s) 469, 902
EcoRI GAATTC 1 cut(s) 722
EcoT22I ATGCAT 2 cut(s) 251, 736
Esp3I CGTCTC 1 cut(s) 921
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 987
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 4 cut(s) 22, 241, 528, 605
FokI GGATG 4 cut(s) 236, 416, 556, 1078
Fsp4HI GCNGC 4 cut(s) 22, 241, 528, 605
GlaI GCGC 1 cut(s) 416
GluI GCNGC 4 cut(s) 22, 241, 528, 605
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 945
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 1 cut(s) 95
HgaI GACGC 2 cut(s) 461, 938
HhaI GCGC 1 cut(s) 417
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HinfI GANTC 1 cut(s) 425
HphI GGTGA 2 cut(s) 470, 844
Hpy166II GTNNAC 2 cut(s) 36, 941
Hpy188I TCNGA 4 cut(s) 370, 382, 589, 710
Hpy188III TCNNGA 5 cut(s) 397, 433, 485, 493, 641
Hpy8I GTNNAC 2 cut(s) 36, 941
Hpy99I CGWCG 2 cut(s) 357, 447
HpyAV CCTTC 3 cut(s) 218, 368, 1095
HpyCH4III ACNGT 3 cut(s) 220, 389, 1012
HpyCH4IV ACGT 5 cut(s) 229, 468, 502, 901, 943
HpyCH4V TGCA 9 cut(s) 149, 249, 317, 506, 599, 734, 819, 979, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 263, 825, 929
HpyF3I CTNAG 4 cut(s) 17, 300, 582, 1098
HpySE526I ACGT 5 cut(s) 229, 468, 502, 901, 943
HspAI GCGC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 987
Kzo9I GATC 3 cut(s) 382, 705, 987
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 622, 1068
LpnPI CCDG 9 cut(s) 42, 267, 327, 403, 446, 654, 869, 909, 1091
Lsp1109I GCAGC 2 cut(s) 33, 539
LweI GCATC 5 cut(s) 136, 177, 258, 657, 743
MaeII ACGT 5 cut(s) 229, 468, 502, 901, 943
MaeIII GTNAC 6 cut(s) 220, 276, 577, 821, 850, 944
MalI GATC 3 cut(s) 384, 707, 989
MboI GATC 3 cut(s) 382, 705, 987
MboII GAAGA 9 cut(s) 20, 23, 98, 191, 357, 534, 547, 706, 1080
MhlI GDGCHC 4 cut(s) 306, 627, 715, 1065
MluCI AATT 4 cut(s) 182, 563, 681, 722
MmeI TCCRAC 2 cut(s) 65, 521
MnlI CCTC 6 cut(s) 415, 642, 871, 973, 976, 1012
Mph1103I ATGCAT 2 cut(s) 251, 736
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 483, 857
Mva1269I GAATGC 1 cut(s) 551
MwoI GCNNNNNNNGC 4 cut(s) 246, 263, 825, 929
NdeI CATATG 1 cut(s) 245
NdeII GATC 3 cut(s) 382, 705, 987
NlaIV GGNNCC 1 cut(s) 907
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 577, 850, 944
NsiI ATGCAT 2 cut(s) 251, 736
NspI RCATGY 2 cut(s) 277, 871
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 47
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 517
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 4 cut(s) 23, 242, 529, 606
PmaCI CACGTG 2 cut(s) 469, 902
PmlI CACGTG 2 cut(s) 469, 902
Ppu21I YACGTR 2 cut(s) 469, 902
PscI ACATGT 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 229
PspCI CACGTG 2 cut(s) 469, 902
PspFI CCCAGC 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 907
RsaI GTAC 2 cut(s) 125, 460
RsaNI GTAC 2 cut(s) 124, 459
RseI CAYNNNNRTG 2 cut(s) 483, 857
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 22, 241, 528, 605
Sau3AI GATC 3 cut(s) 382, 705, 987
ScaI AGTACT 2 cut(s) 125, 460
SduI GDGCHC 4 cut(s) 306, 627, 715, 1065
SfaNI GCATC 5 cut(s) 136, 177, 258, 657, 743
SmiMI CAYNNNNRTG 2 cut(s) 483, 857
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 182, 563, 681, 722
SsiI CCGC 3 cut(s) 241, 604, 670
SspI AATATT 1 cut(s) 784
TaaI ACNGT 3 cut(s) 220, 389, 1012
TaiI ACGT 5 cut(s) 232, 471, 505, 904, 946
TaqI TCGA 3 cut(s) 634, 888, 1014
TaqII GACCGA 1 cut(s) 902
TasI AATT 4 cut(s) 182, 563, 681, 722
TatI WGTACW 2 cut(s) 123, 458
TauI GCSGC 2 cut(s) 243, 607
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 3 cut(s) 392, 606, 632
TseFI GTSAC 3 cut(s) 577, 850, 944
TseI GCWGC 2 cut(s) 21, 527
Tsp45I GTSAC 3 cut(s) 577, 850, 944
TspDTI ATGAA 6 cut(s) 98, 171, 190, 906, 1011, 1080
TspRI CASTG 3 cut(s) 392, 606, 632
XapI RAATTY 1 cut(s) 722
XceI RCATGY 2 cut(s) 277, 871
XmiI GTMKAC 1 cut(s) 940
ZrmI AGTACT 2 cut(s) 125, 460
Zsp2I ATGCAT 2 cut(s) 251, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.