Rh7BG307800

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011715
Physical Location & Seq
Reverse (-)
29564507 .. 29568544
4038 bp
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UTR
Exon/CDS
Intron
Rh7BG307800.1

Sequence Viewer

Length: 1113 bp
ATGGCAGAAGAAGAACTCAGCAGCTCTTTAGAGTTTACTCCAACATGGGTGGTAGCAGGTGTTTGCTTTGTCATTGTTCTGTTATCTCTTTTTGCCGAGCGTGGTCTTCATAAACTTGGAAAGTACTTGCTGCATGAGAAACAAGATGCACTATATGAAGCCTTACAAAAACTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTCCCTTCTGCTAACTGTAACTCAACGTTCCATAAGCCGCATATGCATCCCTGCCCATGTCGCAACTCACATGTTACCATGTAAAAGGGAAACTGCTGAGCACAAAACCCCTGCACATTACTTTCTTAATCACTCTACAAACAATGGTCGACGCCTTCTGTCTTCAGAAACAACTTCAGATCACTGTCAGCTCAAGATACGACAATGGAAGCGCTGGGAGGATTCCATCCAGAAGGAACTAAGAAATGGTAAAAGTACTGCTGAAGTTCGTCATCACCATCGTGCGTTCTTGAAAGAACGTGCAGATGGATATTGGAGAAGAGCAGCTATTATAGGTTGGGTGATAGCATTCTTCAAACAATTTTATGGCTCTGTCACTAAGTCAGACTACATTGCACTGCGGCAAGGGTTTATCAAGGAGCACTGCCCTGGATATCCTGATTTTGATTTTCACGAATACATGATGCGGACACTTGAAATTGATTTTAGGAAGATTGTTGGGATCAGCTGGTACCTGTGGCTTTTTGTTGTGCTGTTTTTGTTGCTGAATGTGGACGGATGGAACACATACTTTTGGTTAGCATTTTTACCGCTGATTCTTCTGCTTCTAGTGGGGGCCAAATTGGAACACATAATCAGCCGTTTGGCTCAGGATGTTAAACAAATAGGAGTACATGCTAATGAATCAGCTATAAGAATGGGTAGCATGTTCAAGGAGGGAATGTTCGATCATATGGTACAAAAAGCCATTGGTCTGTGGGCTGGAAATGTAAAGAGTAAACGTGACGATAGCGAGCGTTCCTCCTCACATGGTATGCACAAAATGATCAACAATGAATCGTCCACAACTGTCGATGTTGCAGAACAAGAAATGGTTGCCATGGAAAGAACTACAAATGTGCTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

370

Amino Acids

42.8

Weight (kDa)

8.67

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 127 4.2e-38 Mlo family
Mlo PF03094 124 - 289 1.1e-59 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 714
AccI GTMKAC 1 cut(s) 352
AciI CCGC 4 cut(s) 241, 604, 670, 794
AclI AACGTT 1 cut(s) 229
AclWI GGATC 1 cut(s) 713
AcuI CTGAAG 3 cut(s) 351, 363, 486
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 5 cut(s) 125, 460, 716, 876, 942
AfeI AGCGCT 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 4 cut(s) 496, 559, 680, 916
AjnI CCWGG 1 cut(s) 631
AleI CACNNNNGTG 1 cut(s) 483
AloI GAACNNNNNNTCC 2 cut(s) 911, 943
AluBI AGCT 5 cut(s) 24, 394, 530, 711, 893
AluI AGCT 5 cut(s) 24, 394, 530, 711, 893
Alw21I GWGCWC 3 cut(s) 306, 627, 1107
AlwI GGATC 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 416
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 21, 130, 527
Asp718I GGTACC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 819
AsuHPI GGTGA 2 cut(s) 470, 556
BanI GGYRCC 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 98, 357
Bbv12I GWGCWC 3 cut(s) 306, 627, 1107
BbvI GCAGC 3 cut(s) 33, 117, 539
BccI CCATC 4 cut(s) 437, 489, 503, 756
BceAI ACGGC 1 cut(s) 828
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 1029
BfaI CTAG 1 cut(s) 812
BfoI RGCGCY 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 22, 131, 241, 528, 605
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 5 cut(s) 23, 132, 242, 529, 606
BmcAI AGTACT 2 cut(s) 125, 460
Bme1390I CCNGG 1 cut(s) 633
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 2 cut(s) 716, 820
BmrFI CCNGG 1 cut(s) 633
BmsI GCATC 4 cut(s) 136, 177, 258, 657
BpiI GAAGAC 2 cut(s) 98, 357
BplI GAGNNNNNCTC 2 cut(s) 989, 1021
Bpu10I CCTNAGC 1 cut(s) 852
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 631, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 631, 1083
BseGI GGATG 4 cut(s) 249, 429, 767, 862
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 3 cut(s) 31, 291, 866
BseRI GAGGAG 1 cut(s) 997
BseXI GCAGC 3 cut(s) 33, 117, 539
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 2 cut(s) 300, 525
BshFI GGCC 1 cut(s) 821
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 3 cut(s) 306, 627, 1107
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 1 cut(s) 821
Bsp1286I GDGCHC 3 cut(s) 306, 627, 1107
Bsp143I GATC 4 cut(s) 382, 705, 931, 1029
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 1083
BspACI CCGC 4 cut(s) 241, 604, 670, 794
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 3 cut(s) 30, 292, 865
BspLI GGNNCC 2 cut(s) 716, 820
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 713
BspQI GCTCTTC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 631, 1083
BssMI GATC 4 cut(s) 382, 705, 931, 1029
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 3 cut(s) 220, 389, 1054
Bst6I CTCTTC 1 cut(s) 517
BstACI GRCGYC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 998
BstDEI CTNAG 5 cut(s) 17, 300, 443, 582, 852
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 4 cut(s) 249, 429, 767, 862
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 4 cut(s) 385, 708, 934, 1032
BstMBI GATC 4 cut(s) 382, 705, 931, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 246, 263
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 3 cut(s) 277, 881, 913
BstSCI CCNGG 1 cut(s) 631
BstV1I GCAGC 3 cut(s) 33, 117, 539
BstV2I GAAGAC 2 cut(s) 98, 357
BsuRI GGCC 1 cut(s) 821
BtgI CCRYGG 1 cut(s) 1083
BtsCI GGATG 4 cut(s) 249, 429, 767, 862
BtsI GCAGTG 2 cut(s) 599, 625
BtsIMutI CAGTG 3 cut(s) 385, 599, 625
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 998
CfoI GCGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 819
CseI GACGC 1 cut(s) 363
Csp6I GTAC 5 cut(s) 124, 459, 715, 875, 941
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviQI GTAC 5 cut(s) 124, 459, 715, 875, 941
DdeI CTNAG 5 cut(s) 17, 300, 443, 582, 852
DpnI GATC 4 cut(s) 384, 707, 933, 1031
DpnII GATC 4 cut(s) 382, 705, 931, 1029
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 1083
Eco32I GATATC 1 cut(s) 638
Eco47III AGCGCT 1 cut(s) 416
Eco57I CTGAAG 3 cut(s) 351, 363, 486
EcoRII CCWGG 1 cut(s) 631
EcoRV GATATC 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 1083
FauNDI CATATG 2 cut(s) 245, 936
FbaI TGATCA 1 cut(s) 1029
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 22, 131, 241, 528, 605
FokI GGATG 4 cut(s) 236, 416, 774, 869
Fsp4HI GCNGC 5 cut(s) 22, 131, 241, 528, 605
FspBI CTAG 1 cut(s) 812
GlaI GCGC 1 cut(s) 416
GluI GCNGC 5 cut(s) 22, 131, 241, 528, 605
GsaI CCCAGC 1 cut(s) 421
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 1 cut(s) 821
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 4 cut(s) 425, 799, 887, 1040
HphI GGTGA 2 cut(s) 470, 556
Hpy166II GTNNAC 5 cut(s) 36, 353, 757, 983, 1047
Hpy188I TCNGA 3 cut(s) 370, 382, 589
Hpy188III TCNNGA 6 cut(s) 397, 433, 493, 641, 656, 854
Hpy8I GTNNAC 5 cut(s) 36, 353, 757, 983, 1047
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 3 cut(s) 218, 368, 430
HpyCH4III ACNGT 3 cut(s) 220, 389, 1054
HpyCH4IV ACGT 3 cut(s) 229, 502, 985
HpyCH4V TGCA 8 cut(s) 133, 149, 249, 317, 506, 599, 1021, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 263
HpyF3I CTNAG 5 cut(s) 17, 300, 443, 582, 852
HpySE526I ACGT 3 cut(s) 229, 502, 985
Hsp92I GRCGYC 1 cut(s) 355
HspAI GCGC 1 cut(s) 415
KpnI GGTACC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 1029
Kzo9I GATC 4 cut(s) 382, 705, 931, 1029
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 622, 1110
Lsp1109I GCAGC 3 cut(s) 33, 117, 539
LweI GCATC 4 cut(s) 136, 177, 258, 657
MaeI CTAG 1 cut(s) 812
MaeII ACGT 3 cut(s) 229, 502, 985
MaeIII GTNAC 4 cut(s) 220, 276, 577, 986
MalI GATC 4 cut(s) 384, 707, 933, 1031
MboI GATC 4 cut(s) 382, 705, 931, 1029
MboII GAAGA 9 cut(s) 20, 23, 98, 191, 357, 534, 547, 706, 794
MhlI GDGCHC 3 cut(s) 306, 627, 1107
MluCI AATT 4 cut(s) 182, 563, 681, 824
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 4 cut(s) 415, 913, 1015, 1018
Mph1103I ATGCAT 1 cut(s) 251
MseI TTAA 3 cut(s) 330, 861, 1111
MslI CAYNNNNRTG 2 cut(s) 483, 882
MspA1I CMGCKG 2 cut(s) 711, 796
MspR9I CCNGG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 1 cut(s) 633
MwoI GCNNNNNNNGC 2 cut(s) 246, 263
NcoI CCATGG 1 cut(s) 1083
NdeI CATATG 2 cut(s) 245, 936
NdeII GATC 4 cut(s) 382, 705, 931, 1029
NlaIV GGNNCC 2 cut(s) 716, 820
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 577, 986
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 3 cut(s) 277, 881, 913
OliI CACNNNNGTG 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 47
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 517
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 4 cut(s) 425, 799, 887, 1040
PkrI GCNGC 5 cut(s) 23, 132, 242, 529, 606
PscI ACATGT 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 2 cut(s) 716, 820
PspPI GGNCC 1 cut(s) 819
PvuII CAGCTG 1 cut(s) 711
RsaI GTAC 5 cut(s) 125, 460, 716, 876, 942
RsaNI GTAC 5 cut(s) 124, 459, 715, 875, 941
RseI CAYNNNNRTG 2 cut(s) 483, 882
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 3 cut(s) 330, 861, 1111
SatI GCNGC 5 cut(s) 22, 131, 241, 528, 605
Sau3AI GATC 4 cut(s) 382, 705, 931, 1029
Sau96I GGNCC 1 cut(s) 819
ScaI AGTACT 2 cut(s) 125, 460
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 3 cut(s) 306, 627, 1107
SfaNI GCATC 4 cut(s) 136, 177, 258, 657
SmiMI CAYNNNNRTG 2 cut(s) 483, 882
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 182, 563, 681, 824
SsiI CCGC 4 cut(s) 241, 604, 670, 794
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 3 cut(s) 220, 389, 1054
TaiI ACGT 3 cut(s) 232, 505, 988
TaqI TCGA 3 cut(s) 352, 930, 1056
TasI AATT 4 cut(s) 182, 563, 681, 824
TatI WGTACW 3 cut(s) 123, 458, 874
TauI GCSGC 2 cut(s) 243, 607
TfiI GAWTC 4 cut(s) 425, 799, 887, 1040
Tru1I TTAA 3 cut(s) 330, 861, 1111
Tru9I TTAA 3 cut(s) 330, 861, 1111
TscAI CASTG 3 cut(s) 392, 606, 632
TseFI GTSAC 2 cut(s) 577, 986
TseI GCWGC 3 cut(s) 21, 130, 527
Tsp45I GTSAC 2 cut(s) 577, 986
TspDTI ATGAA 5 cut(s) 98, 171, 190, 900, 1053
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 3 cut(s) 392, 606, 632
XceI RCATGY 3 cut(s) 277, 881, 913
XmiI GTMKAC 1 cut(s) 352
XspI CTAG 1 cut(s) 812
ZrmI AGTACT 2 cut(s) 125, 460
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.