Rmu_sc0003627.1_g000013

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003627.1
OG0011715
Physical Location & Seq
Forward (+)
59977 .. 64023
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003627.1_g000013.1.cds

Sequence Viewer

Length: 1431 bp
atggcagaagaagaactcagcagctctttagagtttactccaacatgggtggtagcaggtgtttgctttgtcattgttctgttatctctttttgccgagcgtggtcttcataaacttggaaagtacttgctgcatgagaaacaagatgcactatatgaagccttacaaaaactaaaagaagaattgatgcttttagggttcatttcccttctgctaactgtaactcaacgttccataagccgcatatgcatccctgcccatgtcgcaactcacatgttaccatgtaaaagggaaactgctgagcacaaaacccctgcacattactttcttaatcactctacaaacaatggtcgacgccttctgtcttcagaaacaacttcagatcactgtcagctcaaggggaaggttccattgttatcattggaaggattacatcatctacacatcttcatctttgtattagcagttgttcatgtgatcttctgtgtctcaaccatggttcttggaggggcaagagtacgacaatggaagcgctgggaggaatccatccagaaggatcgacgaagcggtaaaagtactgctcaagttgggcatcaccatcgtgcgttcttgaaagaacgtgcagatggatattggagaagagcagctattataggttggatgatagcattcttcaaacaattttatggctctatcactaagtcagactacattgcactgcggcaagggtttatcaaggagcactgccctggaaatcctgattttgattttcacaaatacatgatgcggacacttgaagttgattttagaaagattgttgggatcaggatggaacacatacttttgcttctgcttctagtgggggccaaattggaacacataattagccgtttggctcaggatgttgaacaaacaggagtacgtgctaatgaaggagctacaagagtgaggccttcagatgaacacttctggtttaacaaacctaggattgttctcaatttgatccacttcattctgtttcaaaattcattcgagattgctttcttcttctggatttggagcacctatggaattcactcatgcatcatggaaaagttgggctacatcatcgcaagacttattatgggtgtgatagttcaagtgctttgcagttacagcaccctaccattgtatgttatcgtcacccagatgggtagcaagttcaaggagggaatgttcgatgaaacgatacatggtgccatcgatatatgggctgaaggtgcaatgagtaaaagtgacgatagcaagcgatcctcctcacgtagtatgcacaaaatgatcaacaatgaagcctccacaactgtcgatgttgcagaacaagaaatggttgtcatggaaagaactataaatgtgctcccttgtcaagtccagccaccttcttcatcctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

476

Amino Acids

54.48

Weight (kDa)

8.84

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 1235
AccI GTMKAC 1 cut(s) 352
AciI CCGC 4 cut(s) 241, 567, 721, 787
AclI AACGTT 1 cut(s) 229
AclWI GGATC 4 cut(s) 564, 830, 997, 1284
AcsI RAATTY 2 cut(s) 1024, 1071
AcuI CTGAAG 4 cut(s) 351, 363, 939, 1275
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 4 cut(s) 125, 519, 577, 921
AfeI AGCGCT 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 7 cut(s) 613, 676, 797, 908, 1022, 1139, 1204
AjnI CCWGG 1 cut(s) 748
AleI CACNNNNGTG 1 cut(s) 600
AloI GAACNNNNNNTCC 2 cut(s) 1199, 1231
AluBI AGCT 4 cut(s) 24, 394, 647, 938
AluI AGCT 4 cut(s) 24, 394, 647, 938
Alw21I GWGCWC 4 cut(s) 306, 744, 1064, 1395
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 4 cut(s) 564, 830, 997, 1284
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 2 cut(s) 864, 950
ApeKI GCWGC 3 cut(s) 21, 130, 644
ApoI RAATTY 2 cut(s) 1024, 1071
AspA2I CCTAGG 1 cut(s) 983
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 864
AsuHPI GGTGA 2 cut(s) 587, 1174
AvrII CCTAGG 1 cut(s) 983
BanI GGYRCC 1 cut(s) 1235
BbsI GAAGAC 2 cut(s) 98, 357
Bbv12I GWGCWC 4 cut(s) 306, 744, 1064, 1395
BbvI GCAGC 3 cut(s) 33, 117, 656
BccI CCATC 6 cut(s) 554, 606, 620, 823, 1183, 1247
BceAI ACGGC 1 cut(s) 873
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 750
BclI TGATCA 1 cut(s) 1317
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 857, 984
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 22, 131, 241, 645, 722
BlnI CCTAGG 1 cut(s) 983
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 5 cut(s) 23, 132, 242, 646, 723
BmcAI AGTACT 2 cut(s) 125, 577
Bme1390I CCNGG 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 864
BmiI GGNNCC 3 cut(s) 408, 865, 1237
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1092
BpiI GAAGAC 2 cut(s) 98, 357
Bpu10I CCTNAGC 1 cut(s) 897
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 380, 567
Bsa29I ATCGAT 1 cut(s) 1242
BsaAI YACGTR 2 cut(s) 923, 1301
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 3 cut(s) 495, 748, 983
BsaXI ACNNNNNCTCC 2 cut(s) 1199, 1229
Bse3DI GCAATG 2 cut(s) 711, 1269
BseBI CCWGG 1 cut(s) 750
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 3 cut(s) 495, 748, 983
BseGI GGATG 6 cut(s) 249, 546, 666, 834, 907, 1421
BseMI GCAATG 2 cut(s) 711, 1269
BseMII CTCAG 3 cut(s) 31, 291, 911
BseRI GAGGAG 1 cut(s) 1285
BseXI GCAGC 3 cut(s) 33, 117, 656
BseYI CCCAGC 1 cut(s) 534
BsgI GTGCAG 2 cut(s) 300, 642
BshFI GGCC 2 cut(s) 866, 952
BshNI GGYRCC 1 cut(s) 1235
BshVI ATCGAT 1 cut(s) 1242
BsiHKAI GWGCWC 4 cut(s) 306, 744, 1064, 1395
BsmAI GTCTC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 866, 952
Bsp1286I GDGCHC 4 cut(s) 306, 744, 1064, 1395
Bsp143I GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 4 cut(s) 241, 567, 721, 787
BspANI GGCC 2 cut(s) 866, 952
BspCNI CTCAG 3 cut(s) 30, 292, 910
BspDI ATCGAT 1 cut(s) 1242
BspLI GGNNCC 3 cut(s) 408, 865, 1237
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 564, 830, 997, 1284
BspQI GCTCTTC 1 cut(s) 634
BspT107I GGYRCC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 711, 1269
BssECI CCNNGG 3 cut(s) 495, 748, 983
BssMI GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 495, 983
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 3 cut(s) 220, 389, 1342
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 1 cut(s) 355
BstBAI YACGTR 2 cut(s) 923, 1301
BstC8I GCNNGC 1 cut(s) 1286
BstDEI CTNAG 5 cut(s) 17, 300, 699, 897, 1428
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 6 cut(s) 249, 546, 666, 834, 907, 1421
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 7 cut(s) 385, 480, 559, 825, 1005, 1292, 1320
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
BstMWI GCNNNNNNNGC 4 cut(s) 246, 263, 1155, 1259
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 33, 117, 656
BstV2I GAAGAC 2 cut(s) 98, 357
Bsu15I ATCGAT 1 cut(s) 1242
BsuRI GGCC 2 cut(s) 866, 952
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 1093
BtsCI GGATG 6 cut(s) 249, 546, 666, 834, 907, 1421
BtsI GCAGTG 2 cut(s) 716, 742
BtsIMutI CAGTG 3 cut(s) 385, 716, 742
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 1286
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 864
ClaI ATCGAT 1 cut(s) 1242
CseI GACGC 1 cut(s) 363
Csp6I GTAC 4 cut(s) 124, 518, 576, 920
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviQI GTAC 4 cut(s) 124, 518, 576, 920
DdeI CTNAG 5 cut(s) 17, 300, 699, 897, 1428
DpnI GATC 7 cut(s) 384, 479, 558, 824, 1004, 1291, 1319
DpnII GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 495, 983
Eco147I AGGCCT 1 cut(s) 952
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 4 cut(s) 351, 363, 939, 1275
EcoRI GAATTC 1 cut(s) 1071
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 495, 983
EcoT22I ATGCAT 2 cut(s) 251, 1085
ErhI CCWWGG 2 cut(s) 495, 983
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 1317
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 22, 131, 241, 645, 722
FokI GGATG 6 cut(s) 236, 533, 673, 841, 914, 1408
Fsp4HI GCNGC 5 cut(s) 22, 131, 241, 645, 722
FspBI CTAG 2 cut(s) 857, 984
GlaI GCGC 1 cut(s) 533
GluI GCNGC 5 cut(s) 22, 131, 241, 645, 722
GsaI CCCAGC 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 866, 952
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 1 cut(s) 542
HphI GGTGA 2 cut(s) 587, 1174
Hpy166II GTNNAC 2 cut(s) 36, 353
Hpy188I TCNGA 4 cut(s) 370, 382, 706, 958
Hpy188III TCNNGA 7 cut(s) 550, 610, 758, 826, 899, 1033, 1051
Hpy8I GTNNAC 2 cut(s) 36, 353
Hpy99I CGWCG 2 cut(s) 357, 564
HpyAV CCTTC 9 cut(s) 218, 368, 397, 419, 547, 926, 963, 1250, 1425
HpyCH4III ACNGT 3 cut(s) 220, 389, 1342
HpyCH4IV ACGT 4 cut(s) 229, 619, 922, 1300
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 263, 1155, 1259
HpyF3I CTNAG 5 cut(s) 17, 300, 699, 897, 1428
HpySE526I ACGT 4 cut(s) 229, 619, 922, 1300
Hsp92I GRCGYC 1 cut(s) 355
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 1317
Kzo9I GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 4 cut(s) 739, 935, 1059, 1398
Lsp1109I GCAGC 3 cut(s) 33, 117, 656
LweI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1092
MaeI CTAG 2 cut(s) 857, 984
MaeII ACGT 4 cut(s) 229, 619, 922, 1300
MaeIII GTNAC 5 cut(s) 220, 276, 1151, 1180, 1274
MalI GATC 7 cut(s) 384, 479, 558, 824, 1004, 1291, 1319
MboI GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
MhlI GDGCHC 4 cut(s) 306, 744, 1064, 1395
MluCI AATT 7 cut(s) 182, 680, 869, 882, 997, 1024, 1071
MmeI TCCRAC 2 cut(s) 65, 638
MnlI CCTC 7 cut(s) 500, 532, 942, 1201, 1303, 1306, 1342
Mph1103I ATGCAT 2 cut(s) 251, 1085
MseI TTAA 2 cut(s) 330, 975
MslI CAYNNNNRTG 2 cut(s) 600, 1187
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 246, 263, 1155, 1259
NcoI CCATGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 245
NdeII GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
NlaIV GGNNCC 3 cut(s) 408, 865, 1237
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 1180, 1274
NsiI ATGCAT 2 cut(s) 251, 1085
NspI RCATGY 1 cut(s) 277
OliI CACNNNNGTG 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 47
PceI AGGCCT 1 cut(s) 952
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 634
PctI GAATGC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 542
PkrI GCNGC 5 cut(s) 23, 132, 242, 646, 723
Ppu21I YACGTR 2 cut(s) 923, 1301
PscI ACATGT 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 408, 865, 1237
PspPI GGNCC 1 cut(s) 864
RsaI GTAC 4 cut(s) 125, 519, 577, 921
RsaNI GTAC 4 cut(s) 124, 518, 576, 920
RseI CAYNNNNRTG 2 cut(s) 600, 1187
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 2 cut(s) 330, 975
SatI GCNGC 5 cut(s) 22, 131, 241, 645, 722
Sau3AI GATC 7 cut(s) 382, 477, 556, 822, 1002, 1289, 1317
Sau96I GGNCC 1 cut(s) 864
ScaI AGTACT 2 cut(s) 125, 577
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 4 cut(s) 306, 744, 1064, 1395
SfaNI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1092
SmiMI CAYNNNNRTG 2 cut(s) 600, 1187
SmlI CTYRAG 2 cut(s) 395, 582
SmoI CTYRAG 2 cut(s) 395, 582
Sse9I AATT 7 cut(s) 182, 680, 869, 882, 997, 1024, 1071
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 4 cut(s) 241, 567, 721, 787
SspMI CTAG 2 cut(s) 857, 984
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 2 cut(s) 495, 983
TaaI ACNGT 3 cut(s) 220, 389, 1342
TaiI ACGT 4 cut(s) 232, 622, 925, 1303
TaqI TCGA 6 cut(s) 352, 559, 1032, 1218, 1242, 1344
TasI AATT 7 cut(s) 182, 680, 869, 882, 997, 1024, 1071
TatI WGTACW 2 cut(s) 123, 575
TauI GCSGC 2 cut(s) 243, 724
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 2 cut(s) 330, 975
Tru9I TTAA 2 cut(s) 330, 975
TscAI CASTG 3 cut(s) 392, 723, 749
TseFI GTSAC 2 cut(s) 1180, 1274
TseI GCWGC 3 cut(s) 21, 130, 644
Tsp45I GTSAC 2 cut(s) 1180, 1274
TspRI CASTG 3 cut(s) 392, 723, 749
XapI RAATTY 2 cut(s) 1024, 1071
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 983
XmiI GTMKAC 1 cut(s) 352
XspI CTAG 2 cut(s) 857, 984
ZrmI AGTACT 2 cut(s) 125, 577
Zsp2I ATGCAT 2 cut(s) 251, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.