RchiOBHm_Chr7g0218121

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011715
Physical Location & Seq
Reverse (-)
36077975 .. 36082146
4172 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19525

Sequence Viewer

Length: 1500 bp
ATGGCAGAAGAAGAACTCAGCAGCTCTTTAGAGTTTACTCCAACGTGGGTGGTAGCAGGTGTTTGCTTTGTCATTGTTCTGTTATCTCTTTTTGCCGAGCGTGGTCTTCATAAACTTGGAAAGTACTTGCTGCATGAGAAACAAGATGCACTATATGAAGCCTTACAAAAACTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTCCCTTCTGCTAACTGTAACTCAACGTTCCATAAGCCGCATATGCATCCCTGCCCATGTCGCAACTCACATGTTACCATGTAAAAGGGAAACTGCTGAGCACAAAACCCCTGCACATTACTTTCTTAATCACTCTACAAACAATGGTCGACGCCTTCTGTCTGCAGAAACAACTTCAGATCACTGTCAGCTCAAGGGGAAGGTTCCATTGTTATCATTGGAAGGATTACATCATCTACACATCTTCATCTTTGTATTAGCAGTTGTTCATGTGATCTTCTGTGTCTCAACCATGGTTCTTGGAGGGGCAAGAGTACGACAATGGAAGCGCTGGGAGGAATCCATCCAGAAGGATCGAAGAAGTGGTAAAAGTACTGCTCAAGTTGGGCATCACCATCGTGCGTTCTTGAAAGAACGTGCAGATGGATATTGGAGAAGAGCAGCTATTATAGGTTGGATGATAGCATTCTTCAAACAATTTTATGGCTCTATCACTAAGTCAGACTACATTGCACTGCGGCAAGGGTTTATCAAGGAGCACTGCCCTGGAAATCCTGATTTTGATTTTCACAAATACATGATGCGGACACTAGAAGTTGATTTTAGAAAGATTGTTGGGATCAGCTGGTACCTGTGGCTCTTTGTTGTGCTGTTTTTGTTGCTGAATGTGGACGGATGGAACACATACTTTTGGTTAGCATTTTTACCGCTGATTCTTCTGCTTCTAGTGGGGGCCAAATTGGAAAACATAATTAGCCGTTTGGCTCAGGATGTTGAACAAACAGGAGTACGTGCTAATGAAGGAGCTACAAGAGTGAGGCCTTCAGATGAACACTTCTGGTTTAACAAACCTAGGATTGTTCTCAATTTGATCCACTTCATTCTGTTTCAAAATTCATTCGAGATTGCTTTCTTCTTCTGGATTTGGAGCACCTATGGAATTCACTCATGCATCATGGAAAAGTTGGGCTACATCATCGCAAGACTTATTATGGGTGTGATAGTTCAAGTGCTTTGCAGTTACAGCACCCTACCATTGTATGTTATCGTCACCCAGATGGGTAGCAAGTTCAAGGAGGGAATGTTCGATGAAACGGTACATGGTGCCATCGGTATATGGGCTGAAGGTGCAATGAGTAAAAGTGACGATAGCAAGCGATCCTCCTCACATGGTATACACAAAATGATCAACAATGAAGCCTCCACAACTGTCGATGTTGCAGAACAAGAAATGGTTGTCATGGAAAGAACTATAAATGTGCTCCCTTGTCAAGTCCAGCCACCTTCATCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

499

Amino Acids

57.16

Weight (kDa)

8.72

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 469 9.6e-182 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 831
AccB1I GGYRCC 2 cut(s) 831, 1307
AccI GTMKAC 2 cut(s) 352, 1378
AciI CCGC 4 cut(s) 241, 721, 787, 911
AclI AACGTT 1 cut(s) 229
AclWI GGATC 4 cut(s) 564, 830, 1069, 1356
AcsI RAATTY 2 cut(s) 1096, 1143
AcuI CTGAAG 3 cut(s) 363, 1011, 1347
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 6 cut(s) 125, 519, 577, 833, 993, 1302
AfeI AGCGCT 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 6 cut(s) 613, 676, 980, 1094, 1211, 1276
AjnI CCWGG 1 cut(s) 748
AleI CACNNNNGTG 1 cut(s) 600
AloI GAACNNNNNNTCC 2 cut(s) 1271, 1303
AluBI AGCT 5 cut(s) 24, 394, 647, 828, 1010
AluI AGCT 5 cut(s) 24, 394, 647, 828, 1010
Alw21I GWGCWC 4 cut(s) 306, 744, 1136, 1467
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 4 cut(s) 564, 830, 1069, 1356
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 2 cut(s) 936, 1022
ApeKI GCWGC 3 cut(s) 21, 130, 644
ApoI RAATTY 2 cut(s) 1096, 1143
Asp718I GGTACC 1 cut(s) 831
AspA2I CCTAGG 1 cut(s) 1055
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 936
AsuHPI GGTGA 2 cut(s) 587, 1246
AvrII CCTAGG 1 cut(s) 1055
BanI GGYRCC 2 cut(s) 831, 1307
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 4 cut(s) 306, 744, 1136, 1467
BbvI GCAGC 3 cut(s) 33, 117, 656
BccI CCATC 6 cut(s) 554, 606, 620, 873, 1255, 1319
BceAI ACGGC 1 cut(s) 945
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 750
BclI TGATCA 1 cut(s) 1389
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 3 cut(s) 794, 929, 1056
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 22, 131, 241, 645, 722
BlnI CCTAGG 1 cut(s) 1055
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 5 cut(s) 23, 132, 242, 646, 723
BmcAI AGTACT 2 cut(s) 125, 577
Bme1390I CCNGG 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 936
BmiI GGNNCC 4 cut(s) 408, 833, 937, 1309
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1164
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 969
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 380, 567
BsaAI YACGTR 1 cut(s) 995
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 3 cut(s) 495, 748, 1055
BsaXI ACNNNNNCTCC 2 cut(s) 1271, 1301
Bse3DI GCAATG 2 cut(s) 711, 1341
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 495, 748, 1055
BseGI GGATG 6 cut(s) 249, 546, 666, 884, 979, 1490
BseMI GCAATG 2 cut(s) 711, 1341
BseMII CTCAG 3 cut(s) 31, 291, 983
BseRI GAGGAG 1 cut(s) 1357
BseXI GCAGC 3 cut(s) 33, 117, 656
BseYI CCCAGC 1 cut(s) 534
BsgI GTGCAG 2 cut(s) 300, 642
BshFI GGCC 2 cut(s) 938, 1024
BshNI GGYRCC 2 cut(s) 831, 1307
BsiHKAI GWGCWC 4 cut(s) 306, 744, 1136, 1467
BsmAI GTCTC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 938, 1024
Bsp1286I GDGCHC 4 cut(s) 306, 744, 1136, 1467
Bsp143I GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
Bsp1720I GCTNAGC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 4 cut(s) 241, 721, 787, 911
BspANI GGCC 2 cut(s) 938, 1024
BspCNI CTCAG 3 cut(s) 30, 292, 982
BspLI GGNNCC 4 cut(s) 408, 833, 937, 1309
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 564, 830, 1069, 1356
BspQI GCTCTTC 1 cut(s) 634
BspT107I GGYRCC 2 cut(s) 831, 1307
BsrDI GCAATG 2 cut(s) 711, 1341
BssECI CCNNGG 3 cut(s) 495, 748, 1055
BssMI GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
BssNAI GTATAC 1 cut(s) 1379
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 495, 1055
Bst1107I GTATAC 1 cut(s) 1379
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 4 cut(s) 220, 389, 1300, 1414
Bst6I CTCTTC 1 cut(s) 634
BstACI GRCGYC 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 995
BstC8I GCNNGC 1 cut(s) 1358
BstDEI CTNAG 5 cut(s) 17, 300, 699, 969, 1497
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 6 cut(s) 249, 546, 666, 884, 979, 1490
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 7 cut(s) 385, 480, 559, 825, 1077, 1364, 1392
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
BstMWI GCNNNNNNNGC 4 cut(s) 246, 263, 1227, 1331
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 33, 117, 656
BstV2I GAAGAC 1 cut(s) 98
BstZ17I GTATAC 1 cut(s) 1379
BsuRI GGCC 2 cut(s) 938, 1024
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 1165
BtsCI GGATG 6 cut(s) 249, 546, 666, 884, 979, 1490
BtsI GCAGTG 2 cut(s) 716, 742
BtsIMutI CAGTG 3 cut(s) 385, 716, 742
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 1358
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 936
CseI GACGC 1 cut(s) 363
Csp6I GTAC 6 cut(s) 124, 518, 576, 832, 992, 1301
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviQI GTAC 6 cut(s) 124, 518, 576, 832, 992, 1301
DdeI CTNAG 5 cut(s) 17, 300, 699, 969, 1497
DpnI GATC 7 cut(s) 384, 479, 558, 824, 1076, 1363, 1391
DpnII GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 495, 1055
Eco147I AGGCCT 1 cut(s) 1024
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 3 cut(s) 363, 1011, 1347
EcoRI GAATTC 1 cut(s) 1143
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 495, 1055
EcoT22I ATGCAT 2 cut(s) 251, 1157
ErhI CCWWGG 2 cut(s) 495, 1055
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 1389
FblI GTMKAC 2 cut(s) 352, 1378
Fnu4HI GCNGC 5 cut(s) 22, 131, 241, 645, 722
FokI GGATG 6 cut(s) 236, 533, 673, 891, 986, 1477
Fsp4HI GCNGC 5 cut(s) 22, 131, 241, 645, 722
FspBI CTAG 3 cut(s) 794, 929, 1056
GlaI GCGC 1 cut(s) 533
GluI GCNGC 5 cut(s) 22, 131, 241, 645, 722
GsaI CCCAGC 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 938, 1024
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 2 cut(s) 542, 916
HphI GGTGA 2 cut(s) 587, 1246
Hpy166II GTNNAC 4 cut(s) 36, 353, 874, 1379
Hpy188I TCNGA 3 cut(s) 382, 706, 1030
Hpy188III TCNNGA 6 cut(s) 550, 610, 758, 971, 1105, 1123
Hpy8I GTNNAC 4 cut(s) 36, 353, 874, 1379
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 9 cut(s) 218, 368, 397, 419, 547, 998, 1035, 1322, 1497
HpyCH4III ACNGT 4 cut(s) 220, 389, 1300, 1414
HpyCH4IV ACGT 4 cut(s) 44, 229, 619, 994
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 263, 1227, 1331
HpyF3I CTNAG 5 cut(s) 17, 300, 699, 969, 1497
HpySE526I ACGT 4 cut(s) 44, 229, 619, 994
Hsp92I GRCGYC 1 cut(s) 355
HspAI GCGC 1 cut(s) 532
KpnI GGTACC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 1389
Kzo9I GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 4 cut(s) 739, 1007, 1131, 1470
Lsp1109I GCAGC 3 cut(s) 33, 117, 656
LweI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1164
MaeI CTAG 3 cut(s) 794, 929, 1056
MaeII ACGT 4 cut(s) 44, 229, 619, 994
MaeIII GTNAC 5 cut(s) 220, 276, 1223, 1252, 1346
MalI GATC 7 cut(s) 384, 479, 558, 824, 1076, 1363, 1391
MboI GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
MhlI GDGCHC 4 cut(s) 306, 744, 1136, 1467
MluCI AATT 7 cut(s) 182, 680, 941, 954, 1069, 1096, 1143
MmeI TCCRAC 2 cut(s) 65, 638
MnlI CCTC 7 cut(s) 500, 532, 1014, 1273, 1375, 1378, 1414
Mph1103I ATGCAT 2 cut(s) 251, 1157
MseI TTAA 2 cut(s) 330, 1047
MslI CAYNNNNRTG 2 cut(s) 600, 1259
MspA1I CMGCKG 2 cut(s) 828, 913
MspR9I CCNGG 1 cut(s) 750
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 246, 263, 1227, 1331
NcoI CCATGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 245
NdeII GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
NlaIV GGNNCC 4 cut(s) 408, 833, 937, 1309
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 1252, 1346
NsiI ATGCAT 2 cut(s) 251, 1157
NspI RCATGY 1 cut(s) 277
OliI CACNNNNGTG 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 47
PceI AGGCCT 1 cut(s) 1024
PciI ACATGT 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 634
PctI GAATGC 1 cut(s) 668
PfeI GAWTC 2 cut(s) 542, 916
PkrI GCNGC 5 cut(s) 23, 132, 242, 646, 723
Ppu21I YACGTR 1 cut(s) 995
PscI ACATGT 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 4 cut(s) 408, 833, 937, 1309
PspPI GGNCC 1 cut(s) 936
PstI CTGCAG 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 828
RsaI GTAC 6 cut(s) 125, 519, 577, 833, 993, 1302
RsaNI GTAC 6 cut(s) 124, 518, 576, 832, 992, 1301
RseI CAYNNNNRTG 2 cut(s) 600, 1259
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 2 cut(s) 330, 1047
SatI GCNGC 5 cut(s) 22, 131, 241, 645, 722
Sau3AI GATC 7 cut(s) 382, 477, 556, 822, 1074, 1361, 1389
Sau96I GGNCC 1 cut(s) 936
ScaI AGTACT 2 cut(s) 125, 577
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 4 cut(s) 306, 744, 1136, 1467
SfaNI GCATC 6 cut(s) 136, 177, 258, 601, 774, 1164
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 600, 1259
SmlI CTYRAG 2 cut(s) 395, 582
SmoI CTYRAG 2 cut(s) 395, 582
Sse9I AATT 7 cut(s) 182, 680, 941, 954, 1069, 1096, 1143
SseBI AGGCCT 1 cut(s) 1024
SsiI CCGC 4 cut(s) 241, 721, 787, 911
SspMI CTAG 3 cut(s) 794, 929, 1056
StuI AGGCCT 1 cut(s) 1024
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 2 cut(s) 495, 1055
TaaI ACNGT 4 cut(s) 220, 389, 1300, 1414
TaiI ACGT 4 cut(s) 47, 232, 622, 997
TaqI TCGA 5 cut(s) 352, 559, 1104, 1290, 1416
TasI AATT 7 cut(s) 182, 680, 941, 954, 1069, 1096, 1143
TatI WGTACW 2 cut(s) 123, 575
TauI GCSGC 2 cut(s) 243, 724
TfiI GAWTC 2 cut(s) 542, 916
Tru1I TTAA 2 cut(s) 330, 1047
Tru9I TTAA 2 cut(s) 330, 1047
TscAI CASTG 3 cut(s) 392, 723, 749
TseFI GTSAC 2 cut(s) 1252, 1346
TseI GCWGC 3 cut(s) 21, 130, 644
Tsp45I GTSAC 2 cut(s) 1252, 1346
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 3 cut(s) 392, 723, 749
XapI RAATTY 2 cut(s) 1096, 1143
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 1055
XmiI GTMKAC 2 cut(s) 352, 1378
XspI CTAG 3 cut(s) 794, 929, 1056
ZrmI AGTACT 2 cut(s) 125, 577
Zsp2I ATGCAT 2 cut(s) 251, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.