MD08G1246900.v1.1

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011715
Physical Location & Seq
Reverse (-)
31079542 .. 31083802
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1246900.v1.1.491

Sequence Viewer

Length: 1488 bp
ATGGCAGAAGAAGAACTCAACAGCTCTTTAGAGTATACACCGACATGGGTGGTTGCGCTTGTTTGCTTTGTCATTGTTCTGCTCTCTCTTTGTGCCGAGCGCGCTCTTCATAAACTCGGAAAGTATTTAAAGCATGAGAAACAAGATGCGCTATTTGAAGCCCTACAGAAATTAAAAGAAGAGTTGATGCTTTTAGGGTTCATTTCCCTTCTACTAACTGTATCTCAGCGTTCCATAATACGCATATGCATCCCCTCTAATCTAGCAAATCACATGCTTCCGTGCAAGAGGGAAACTTCTGAAGGAAACAATAATGCACATTACTCTCTTGATCAATCTATAAACAACCGGCGGCGGCTTTTGTCCACAGATACAAATTCAGACCATTGTCTGCAAAAGGGGAAGGTTCCGTTGTTATCATTGGAAGCACTACATCATCTACACATCTTCATCTTTGTATTGGCAGTTGTGCATGTGATCTTTTGTGTCACAACTATGGTTCTTGGAGGGGCAAGGGTACGTCAATGGAAGCGCTGGGAGTCTGATGCAACTAGTGGTGGAAATGTGCATGTTTCTCAACGCCAACATCGTGAATTCTTGAGTAAACGAGGAGTAGGATATTGGCGAAGAGCAGCTGTCATAGGTTGGGTGATATCATTCTTCAAACAATTTTATGGTTCTGTCTCTAAGCCGGACTACATTGCATTGCGACAAGGGTTTACCAAGGAGCACTTCCCTTCGGATCCCCAATTTGATTTTCACAAATACATTATGCGGACACTTGAAGCTGATTTTAGAAAAATTGTTGGGATAAGCTGGTACCTATGGCTCTTTGTTGTGCTATTTTTGTTGCTGAATGTGGAAGGATGGCATACCTATTTTTGGTTAGCGTTTTTGCCGCTGATTCTTCTGCTTCTTGTGGGCGCTAAGCTGGAACACATAATTACCCGTTTGGCTCAGGAGGTTACGCAAGGGACGACAGCACTGGGTGATCATGGAGCAGGTGCAAGAGTGAAACCTTCAGACGAACACTTTTGGTTTCACAACCCTCGCATTGTTCTGAATTTGATCCACTTCATATTGTTCCAGAATTCATTTGAGATTGCATTCTTCTTCTGGATCTGGACAACGTATGGATTTCGTTCATGCATCATGGAAAAGTTGGGGTACATCGTGCCGAGACTTATTATGGGTGTGATTGTTCAAGTGCTTTGCAGTTACAGCACACTACCTTTGTATGCACTTGTCAGCCAGATGGGTACCATGTACAAGTTTGATCAAAATGTACAACAATATATTGGTTCGTGGGTGGGAGATGCAAAAAACAAGCAAGATAAAACAGACAAAGACCAATCTTTGTCACAAAGAACACAAACGCACAACATGATGAATACAGAGTTATCTCAAATTGATATTGTACAACAAGAAACAGCTGCCAACAAAACAACTACCACTTCGCCAGTTTCATCCTCTCAACTTTGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

496

Amino Acids

56.91

Weight (kDa)

8.91

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 475 2.6e-178 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24250 AT4G24250
fragaria_vesca FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica Prupe.1G588000_v2.0.a1
pyrus_communis pycom08g21400 pycom08g21750
rosa_chinensis RchiOBHm_Chr7g0218121
rosa_laevigata RLG00000002398
rosa_multiflora Rmu_sc0003627.1_g000013
rosa_roxburghii Rroxscaffold_3G00241290
rosa_rugosa Rorug07G0174300
rosa_samantha Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 992
Acc65I GGTACC 2 cut(s) 819, 1259
AccB1I GGYRCC 2 cut(s) 819, 1259
AccI GTMKAC 1 cut(s) 35
AccII CGCG 1 cut(s) 102
AciI CCGC 4 cut(s) 352, 355, 775, 899
AclWI GGATC 4 cut(s) 737, 750, 1063, 1127
AcsI RAATTY 4 cut(s) 376, 593, 1063, 1090
AcuI CTGAAG 2 cut(s) 321, 1005
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 7 cut(s) 519, 821, 1169, 1261, 1268, 1287, 1419
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 882
AgsI TTSAA 4 cut(s) 158, 664, 785, 1205
AhlI ACTAGT 1 cut(s) 551
AjuI GAANNNNNNNTTGG 4 cut(s) 716, 741, 748, 773
AluBI AGCT 6 cut(s) 24, 635, 788, 816, 931, 1433
AluI AGCT 6 cut(s) 24, 635, 788, 816, 931, 1433
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 2 cut(s) 688, 1174
AlwI GGATC 4 cut(s) 737, 750, 1063, 1127
Aor51HI AGCGCT 1 cut(s) 533
ApeKI GCWGC 2 cut(s) 632, 1433
ApoI RAATTY 4 cut(s) 376, 593, 1063, 1090
Asp718I GGTACC 2 cut(s) 819, 1259
AspLEI GCGC 6 cut(s) 58, 102, 104, 151, 534, 926
AsuHPI GGTGA 2 cut(s) 661, 1001
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 2 cut(s) 819, 1259
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 2 cut(s) 644, 1420
BccI CCATC 2 cut(s) 861, 1249
BclI TGATCA 3 cut(s) 331, 991, 1276
BcoDI GTCTC 2 cut(s) 688, 1174
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 263, 552
BfmI CTRYAG 1 cut(s) 164
BfoI RGCGCY 2 cut(s) 535, 927
BfuAI ACCTGC 1 cut(s) 992
BisI GCNGC 5 cut(s) 353, 356, 633, 899, 1434
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 5 cut(s) 354, 357, 634, 900, 1435
BmiI GGNNCC 4 cut(s) 408, 744, 821, 1261
BmrI ACTGGG 1 cut(s) 995
BmsI GCATC 6 cut(s) 136, 177, 258, 535, 1158, 1306
BmuI ACTGGG 1 cut(s) 995
BoxI GACNNNNGTC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 957
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 723
Bsc4I CCNNNNNNNGG 1 cut(s) 882
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 990, 1460
Bse3DI GCAATG 2 cut(s) 699, 704
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 3 cut(s) 249, 872, 1466
BseLI CCNNNNNNNGG 1 cut(s) 882
BseMI GCAATG 2 cut(s) 699, 704
BseMII CTCAG 2 cut(s) 239, 971
BseNI ACTGG 2 cut(s) 990, 1460
BsePI GCGCGC 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 2 cut(s) 644, 1420
BseYI CCCAGC 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 102
BshNI GGYRCC 2 cut(s) 819, 1259
BsiHKAI GWGCWC 1 cut(s) 732
BsiSI CCGG 2 cut(s) 349, 692
BslFI GGGAC 1 cut(s) 988
BslI CCNNNNNNNGG 1 cut(s) 882
BsmAI GTCTC 2 cut(s) 688, 1174
BsmFI GGGAC 1 cut(s) 988
BsmI GAATGC 1 cut(s) 1106
Bsp1286I GDGCHC 1 cut(s) 732
Bsp1407I TGTACA 3 cut(s) 1266, 1285, 1417
Bsp143I GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
Bsp1720I GCTNAGC 1 cut(s) 927
BspACI CCGC 4 cut(s) 352, 355, 775, 899
BspCNI CTCAG 2 cut(s) 238, 970
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 1484
BspLI GGNNCC 4 cut(s) 408, 744, 821, 1261
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 4 cut(s) 737, 750, 1063, 1127
BspQI GCTCTTC 2 cut(s) 111, 622
BspT107I GGYRCC 2 cut(s) 819, 1259
BsrDI GCAATG 2 cut(s) 699, 704
BsrFI RCCGGY 1 cut(s) 348
BsrGI TGTACA 3 cut(s) 1266, 1285, 1417
BsrI ACTGG 2 cut(s) 990, 1460
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 723
BssHII GCGCGC 1 cut(s) 100
BssMI GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
BssNAI GTATAC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 723
Bst1107I GTATAC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 3 cut(s) 111, 174, 622
BstAUI TGTACA 3 cut(s) 1266, 1285, 1417
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 4 cut(s) 225, 687, 927, 957
BstF5I GGATG 3 cut(s) 249, 872, 1466
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 535, 927
BstHHI GCGC 6 cut(s) 58, 102, 104, 151, 534, 926
BstKTI GATC 7 cut(s) 334, 480, 745, 994, 1071, 1122, 1279
BstMAI GTCTC 2 cut(s) 688, 1174
BstMBI GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 101, 1221
BstNSI RCATGY 3 cut(s) 277, 476, 572
BstPAI GACNNNNGTC 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 644, 1420
BstX2I RGATCY 2 cut(s) 742, 1119
BstYI RGATCY 2 cut(s) 742, 1119
BstZ17I GTATAC 1 cut(s) 36
BtsCI GGATG 3 cut(s) 249, 872, 1466
BtsIMutI CAGTG 1 cut(s) 983
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 1484
CfoI GCGC 6 cut(s) 58, 102, 104, 151, 534, 926
Cfr10I RCCGGY 1 cut(s) 348
Csp6I GTAC 7 cut(s) 518, 820, 1168, 1260, 1267, 1286, 1418
CviQI GTAC 7 cut(s) 518, 820, 1168, 1260, 1267, 1286, 1418
DdeI CTNAG 4 cut(s) 225, 687, 927, 957
DpnI GATC 7 cut(s) 333, 479, 744, 993, 1070, 1121, 1278
DpnII GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
DraI TTTAAA 1 cut(s) 129
DraIII CACNNNGTG 1 cut(s) 989
Eam1104I CTCTTC 3 cut(s) 111, 174, 622
EarI CTCTTC 3 cut(s) 111, 174, 622
Eco130I CCWWGG 1 cut(s) 723
Eco32I GATATC 1 cut(s) 654
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 2 cut(s) 321, 1005
EcoRI GAATTC 2 cut(s) 593, 1090
EcoRV GATATC 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 723
EcoT22I ATGCAT 2 cut(s) 251, 1151
ErhI CCWWGG 1 cut(s) 723
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 1 cut(s) 988
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 3 cut(s) 331, 991, 1276
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 5 cut(s) 353, 356, 633, 899, 1434
FokI GGATG 3 cut(s) 236, 879, 1453
Fsp4HI GCNGC 5 cut(s) 353, 356, 633, 899, 1434
FspBI CTAG 2 cut(s) 263, 552
GlaI GCGC 6 cut(s) 57, 101, 103, 150, 533, 925
GluI GCNGC 5 cut(s) 353, 356, 633, 899, 1434
GsaI CCCAGC 1 cut(s) 538
HaeII RGCGCY 2 cut(s) 535, 927
HapII CCGG 2 cut(s) 349, 692
HhaI GCGC 6 cut(s) 58, 102, 104, 151, 534, 926
Hin6I GCGC 6 cut(s) 56, 100, 102, 149, 532, 924
HinP1I GCGC 6 cut(s) 56, 100, 102, 149, 532, 924
HinfI GANTC 2 cut(s) 539, 904
HpaII CCGG 2 cut(s) 349, 692
HphI GGTGA 2 cut(s) 661, 1001
Hpy166II GTNNAC 4 cut(s) 36, 366, 605, 720
Hpy188I TCNGA 7 cut(s) 119, 301, 382, 544, 742, 1024, 1062
Hpy188III TCNNGA 8 cut(s) 329, 590, 598, 959, 1087, 1117, 1123, 1485
Hpy8I GTNNAC 4 cut(s) 36, 366, 605, 720
HpyAV CCTTC 6 cut(s) 218, 296, 397, 747, 857, 1029
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 520, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 1221
HpyF3I CTNAG 4 cut(s) 225, 687, 927, 957
HpySE526I ACGT 2 cut(s) 520, 1130
HspAI GCGC 6 cut(s) 56, 100, 102, 149, 532, 924
KpnI GGTACC 2 cut(s) 823, 1263
Ksp22I TGATCA 3 cut(s) 331, 991, 1276
Kzo9I GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
LguI GCTCTTC 2 cut(s) 111, 622
LmnI GCTCC 2 cut(s) 727, 998
Lsp1109I GCAGC 2 cut(s) 644, 1420
LweI GCATC 6 cut(s) 136, 177, 258, 535, 1158, 1306
MaeI CTAG 2 cut(s) 263, 552
MaeII ACGT 2 cut(s) 520, 1130
MaeIII GTNAC 4 cut(s) 487, 964, 1217, 1359
MalI GATC 7 cut(s) 333, 479, 744, 993, 1070, 1121, 1278
MboI GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
MflI RGATCY 2 cut(s) 742, 1119
MhlI GDGCHC 1 cut(s) 732
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 7 cut(s) 265, 282, 500, 602, 955, 1059, 1480
Mph1103I ATGCAT 2 cut(s) 251, 1151
MseI TTAA 2 cut(s) 128, 173
MslI CAYNNNNRTG 2 cut(s) 43, 494
MspA1I CMGCKG 3 cut(s) 635, 901, 1433
MspI CCGG 2 cut(s) 349, 692
Mva1269I GAATGC 1 cut(s) 1106
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 101, 1221
NdeI CATATG 1 cut(s) 245
NdeII GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
NlaIV GGNNCC 4 cut(s) 408, 744, 821, 1261
NmeAIII GCCGAG 2 cut(s) 121, 1203
NmuCI GTSAC 2 cut(s) 487, 1359
NsiI ATGCAT 2 cut(s) 251, 1151
NspI RCATGY 3 cut(s) 277, 476, 572
PagI TCATGA 1 cut(s) 1484
PaqCI CACCTGC 1 cut(s) 992
PauI GCGCGC 1 cut(s) 100
PciSI GCTCTTC 2 cut(s) 111, 622
PcsI WCGNNNNNNNCGW 2 cut(s) 586, 974
PctI GAATGC 1 cut(s) 1106
PfeI GAWTC 1 cut(s) 904
PkrI GCNGC 5 cut(s) 354, 357, 634, 900, 1435
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PshAI GACNNNNGTC 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 534
PspN4I GGNNCC 4 cut(s) 408, 744, 821, 1261
PsuI RGATCY 2 cut(s) 742, 1119
PteI GCGCGC 1 cut(s) 100
PvuII CAGCTG 2 cut(s) 635, 1433
RsaI GTAC 7 cut(s) 519, 821, 1169, 1261, 1268, 1287, 1419
RsaNI GTAC 7 cut(s) 518, 820, 1168, 1260, 1267, 1286, 1418
RseI CAYNNNNRTG 2 cut(s) 43, 494
SapI GCTCTTC 2 cut(s) 111, 622
SaqAI TTAA 2 cut(s) 128, 173
SatI GCNGC 5 cut(s) 353, 356, 633, 899, 1434
Sau3AI GATC 7 cut(s) 331, 477, 742, 991, 1068, 1119, 1276
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 6 cut(s) 136, 177, 258, 535, 1158, 1306
SfcI CTRYAG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 43, 494
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SpeI ACTAGT 1 cut(s) 551
SsiI CCGC 4 cut(s) 352, 355, 775, 899
SspMI CTAG 2 cut(s) 263, 552
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 523, 1133
TatI WGTACW 3 cut(s) 1266, 1285, 1417
TauI GCSGC 3 cut(s) 355, 358, 901
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 2 cut(s) 128, 173
Tru9I TTAA 2 cut(s) 128, 173
TscAI CASTG 1 cut(s) 990
TseFI GTSAC 2 cut(s) 487, 1359
TseI GCWGC 2 cut(s) 632, 1433
Tsp45I GTSAC 2 cut(s) 487, 1359
TspDTI ATGAA 9 cut(s) 98, 190, 439, 1066, 1083, 1134, 1403, 1455, 1473
TspGWI ACGGA 2 cut(s) 270, 399
TspRI CASTG 1 cut(s) 990
XapI RAATTY 4 cut(s) 376, 593, 1063, 1090
XceI RCATGY 3 cut(s) 277, 476, 572
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 2 cut(s) 263, 552
Zsp2I ATGCAT 2 cut(s) 251, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.