Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011715

Physical Location & Seq

Genomic Coordinates Reverse (-)

35594978 .. 35599036

Gene Structure 4059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCAGAAGAAGAACTCAGCAGCTCTTTAGAGTTTACTCCAACATGGGTGGTAGCAGGTGTTTGCTTTGTCATTGTTCTGTTATCTCTTTTTGCCGAGCGTGGTCTTCACAAACTTGGAAAGTACTTGCTGCATGAGAAACAAGATGCACTATATGAAGCCTTACAAAAACTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTCCCTTCTGCTAACTGTAACTCAACGTTCCATAAGCCGCATATGCATCCCTGCCCATGTCGCAACTCACATGTTACCATGTAAAAGGGAAACTGCTGAGCACAAAACCCCTGCACATTACTTTCTTAATCACTCTACAAACAATGGTCGACGCCTTCTGTCTTCAGAAACAACTTCAGATCATTGTCAGCTCAAGGTACGACAATGGAAGCGCTGGGAGGAATCCATCCAGAAGGATCGAAGAAGTGGTAAAAGTACTGCTCAAGTTGGGCATCACCATCGTGCGTTCTTGAAAGAACGTGCAGATGGATATTGGAGAAGAGCAGCTATTATAAGTTGGATGATAGCATTCTTCAAACAATTTTATGGCTCTATCACTAAGTCAGACTACATTGCACTGCGGCAAGGGTTTATCAAGGAGCACTGCCCTGGAAATCCTGATTTTGATTTTCACAAATACATGATGCGGACACTTGAAGTTGATTTTAGAAAGATTGTTGGGATCAGCTGGTACCTGTGGCTCTTTGTTGTGCTGTTTTTGTTGCTGAATGTGGATGGATGGAACACATACTTTTGGTTAGCATTTTTACCGCTGATTCTTCTGCTTCTAGTGGGGGCCAAATTGGAACACATAATTAGCCGTTTGGCTCAGGATGTTGAACAAACAGGAGTACGTGCTAATGAAGGAGCTACAAGAGTGAGGCCTTCAGATGAACACTTCTGGTTTAACAAACCTAGGATTATTCTCAATTTGATCCACTTCATTCTGTTTCAAAATTCATTCGAGATTGCTTTCTTCTTCTGGATTTGGAGCACCTATGGAATTCACTCATGCATCATGGAAAAGTTGGGCTACATCATCGCAAGACTTATTATGGGTGTGATAGTTCAAGTGCTTTGCAGTTACAGCACCCTACCATTGTATGTTATCGTCACCCAGATGGGTAGCAAGTTCAAGGAGGGAATGTTCGATGAAACGGTACATGGTGCCATCGGTATATGGGCTGAAGGTGCAATGAGTAAAAGTGACGATAGCAAGCGATCCTCCTCACATAGTATACACAAAATGATCAACAATGAAGCCTCCACAACTGTCGATGTTGCACAACAAGAAATGGTTGTCATGGAAAGAACTATAAATGTGCTCCCTTGTCAAGTCCAGCCACCTTCTTCATCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

461

Amino Acids

53.16

Weight (kDa)

8.77

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	8 - 128	5.7e-38	Mlo family
Mlo	PF03094	124 - 429	1.6e-116	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24250 AT4G24250
fragaria_vesca	FvH4_3g13171 FvH4_5g27121 FvH4_5g27121
malus_domestica	MD08G1246900.v1.1 MD08G1251000.v1.1
prunus_persica	Prupe.1G588000_v2.0.a1
pyrus_communis	pycom08g21400 pycom08g21750
rosa_chinensis	RchiOBHm_Chr7g0218121
rosa_laevigata	RLG00000002398
rosa_multiflora	Rmu_sc0003627.1_g000013
rosa_roxburghii	Rroxscaffold_3G00241290
rosa_rugosa	Rorug07G0174300
rosa_samantha	Rh7AG316700 Rh7BG307800 Rh7CG333600 Rh7DG315600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
Acc65I	GGTACC	1 cut(s)	714
AccB1I	GGYRCC	2 cut(s)	714, 1190
AccI	GTMKAC	2 cut(s)	352, 1261
AciI	CCGC	4 cut(s)	241, 604, 670, 794
AclI	AACGTT	1 cut(s)	229
AclWI	GGATC	4 cut(s)	447, 713, 952, 1239
AcsI	RAATTY	2 cut(s)	979, 1026
AcuI	CTGAAG	4 cut(s)	351, 363, 894, 1230
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	6 cut(s)	125, 402, 460, 716, 876, 1185
AfeI	AGCGCT	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	7 cut(s)	496, 559, 680, 863, 977, 1094, 1159
AjnI	CCWGG	1 cut(s)	631
AleI	CACNNNNGTG	1 cut(s)	483
AloI	GAACNNNNNNTCC	2 cut(s)	1154, 1186
AluBI	AGCT	5 cut(s)	24, 394, 530, 711, 893
AluI	AGCT	5 cut(s)	24, 394, 530, 711, 893
Alw21I	GWGCWC	4 cut(s)	306, 627, 1019, 1350
AlwI	GGATC	4 cut(s)	447, 713, 952, 1239
Aor51HI	AGCGCT	1 cut(s)	416
AoxI	GGCC	2 cut(s)	819, 905
ApeKI	GCWGC	3 cut(s)	21, 130, 527
ApoI	RAATTY	2 cut(s)	979, 1026
Asp718I	GGTACC	1 cut(s)	714
AspA2I	CCTAGG	1 cut(s)	938
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	2 cut(s)	470, 1129
AvrII	CCTAGG	1 cut(s)	938
BanI	GGYRCC	2 cut(s)	714, 1190
BbsI	GAAGAC	2 cut(s)	98, 357
Bbv12I	GWGCWC	4 cut(s)	306, 627, 1019, 1350
BbvI	GCAGC	3 cut(s)	33, 117, 539
BccI	CCATC	7 cut(s)	437, 489, 503, 752, 756, 1138, 1202
BceAI	ACGGC	1 cut(s)	828
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	1272
BfaI	CTAG	2 cut(s)	812, 939
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	22, 131, 241, 528, 605
BlnI	CCTAGG	1 cut(s)	938
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	5 cut(s)	23, 132, 242, 529, 606
BmcAI	AGTACT	2 cut(s)	125, 460
Bme1390I	CCNGG	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	3 cut(s)	716, 820, 1192
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	6 cut(s)	136, 177, 258, 484, 657, 1047
BpiI	GAAGAC	2 cut(s)	98, 357
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	380, 450
BsaAI	YACGTR	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	631, 938
BsaXI	ACNNNNNCTCC	2 cut(s)	1154, 1184
Bse3DI	GCAATG	2 cut(s)	594, 1224
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	631, 938
BseGI	GGATG	7 cut(s)	249, 429, 549, 763, 767, 862, 1376
BseMI	GCAATG	2 cut(s)	594, 1224
BseMII	CTCAG	3 cut(s)	31, 291, 866
BseRI	GAGGAG	1 cut(s)	1240
BseXI	GCAGC	3 cut(s)	33, 117, 539
BseYI	CCCAGC	1 cut(s)	417
BsgI	GTGCAG	2 cut(s)	300, 525
BshFI	GGCC	2 cut(s)	821, 907
BshNI	GGYRCC	2 cut(s)	714, 1190
BsiHKAI	GWGCWC	4 cut(s)	306, 627, 1019, 1350
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	821, 907
Bsp1286I	GDGCHC	4 cut(s)	306, 627, 1019, 1350
Bsp143I	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	4 cut(s)	241, 604, 670, 794
BspANI	GGCC	2 cut(s)	821, 907
BspCNI	CTCAG	3 cut(s)	30, 292, 865
BspLI	GGNNCC	3 cut(s)	716, 820, 1192
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	4 cut(s)	447, 713, 952, 1239
BspQI	GCTCTTC	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	714, 1190
BsrDI	GCAATG	2 cut(s)	594, 1224
BssECI	CCNNGG	2 cut(s)	631, 938
BssMI	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
BssNAI	GTATAC	1 cut(s)	1262
BssNI	GRCGYC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	938
Bst1107I	GTATAC	1 cut(s)	1262
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	3 cut(s)	220, 1183, 1297
Bst6I	CTCTTC	1 cut(s)	517
BstACI	GRCGYC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	878
BstC8I	GCNNGC	1 cut(s)	1241
BstDEI	CTNAG	5 cut(s)	17, 300, 582, 852, 1383
BstF5I	GGATG	7 cut(s)	249, 429, 549, 763, 767, 862, 1376
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	6 cut(s)	385, 442, 708, 960, 1247, 1275
BstMBI	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 263, 1110, 1214
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	631
BstV1I	GCAGC	3 cut(s)	33, 117, 539
BstV2I	GAAGAC	2 cut(s)	98, 357
BstZ17I	GTATAC	1 cut(s)	1262
BsuRI	GGCC	2 cut(s)	821, 907
BtgZI	GCGATG	1 cut(s)	1048
BtsCI	GGATG	7 cut(s)	249, 429, 549, 763, 767, 862, 1376
BtsI	GCAGTG	2 cut(s)	599, 625
BtsIMutI	CAGTG	2 cut(s)	599, 625
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	1241
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	819
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	6 cut(s)	124, 401, 459, 715, 875, 1184
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviQI	GTAC	6 cut(s)	124, 401, 459, 715, 875, 1184
DdeI	CTNAG	5 cut(s)	17, 300, 582, 852, 1383
DpnI	GATC	6 cut(s)	384, 441, 707, 959, 1246, 1274
DpnII	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	938
Eco147I	AGGCCT	1 cut(s)	907
Eco47III	AGCGCT	1 cut(s)	416
Eco57I	CTGAAG	4 cut(s)	351, 363, 894, 1230
EcoRI	GAATTC	1 cut(s)	1026
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	938
EcoT22I	ATGCAT	2 cut(s)	251, 1040
ErhI	CCWWGG	1 cut(s)	938
FauNDI	CATATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	1272
FblI	GTMKAC	2 cut(s)	352, 1261
Fnu4HI	GCNGC	5 cut(s)	22, 131, 241, 528, 605
FokI	GGATG	7 cut(s)	236, 416, 556, 770, 774, 869, 1363
Fsp4HI	GCNGC	5 cut(s)	22, 131, 241, 528, 605
FspBI	CTAG	2 cut(s)	812, 939
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	5 cut(s)	22, 131, 241, 528, 605
GsaI	CCCAGC	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	821, 907
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	2 cut(s)	425, 799
HphI	GGTGA	2 cut(s)	470, 1129
Hpy166II	GTNNAC	3 cut(s)	36, 353, 1262
Hpy188I	TCNGA	4 cut(s)	370, 382, 589, 913
Hpy188III	TCNNGA	6 cut(s)	433, 493, 641, 854, 988, 1006
Hpy8I	GTNNAC	3 cut(s)	36, 353, 1262
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	7 cut(s)	218, 368, 430, 881, 918, 1205, 1380
HpyCH4III	ACNGT	3 cut(s)	220, 1183, 1297
HpyCH4IV	ACGT	3 cut(s)	229, 502, 877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 263, 1110, 1214
HpyF3I	CTNAG	5 cut(s)	17, 300, 582, 852, 1383
HpySE526I	ACGT	3 cut(s)	229, 502, 877
Hsp92I	GRCGYC	1 cut(s)	355
HspAI	GCGC	1 cut(s)	415
KpnI	GGTACC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	1272
Kzo9I	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
LguI	GCTCTTC	1 cut(s)	517
LmnI	GCTCC	4 cut(s)	622, 890, 1014, 1353
Lsp1109I	GCAGC	3 cut(s)	33, 117, 539
LweI	GCATC	6 cut(s)	136, 177, 258, 484, 657, 1047
MaeI	CTAG	2 cut(s)	812, 939
MaeII	ACGT	3 cut(s)	229, 502, 877
MaeIII	GTNAC	5 cut(s)	220, 276, 1106, 1135, 1229
MalI	GATC	6 cut(s)	384, 441, 707, 959, 1246, 1274
MboI	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
MhlI	GDGCHC	4 cut(s)	306, 627, 1019, 1350
MluCI	AATT	7 cut(s)	182, 563, 824, 837, 952, 979, 1026
MmeI	TCCRAC	2 cut(s)	65, 521
MnlI	CCTC	6 cut(s)	415, 897, 1156, 1258, 1261, 1297
Mph1103I	ATGCAT	2 cut(s)	251, 1040
MseI	TTAA	2 cut(s)	330, 930
MslI	CAYNNNNRTG	2 cut(s)	483, 1142
MspA1I	CMGCKG	2 cut(s)	711, 796
MspR9I	CCNGG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	246, 263, 1110, 1214
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
NlaIV	GGNNCC	3 cut(s)	716, 820, 1192
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	1135, 1229
NsiI	ATGCAT	2 cut(s)	251, 1040
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	907
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	517
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	425, 799
PkrI	GCNGC	5 cut(s)	23, 132, 242, 529, 606
Ppu21I	YACGTR	1 cut(s)	878
PscI	ACATGT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	536
Psp1406I	AACGTT	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	716, 820, 1192
PspPI	GGNCC	1 cut(s)	819
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	6 cut(s)	125, 402, 460, 716, 876, 1185
RsaNI	GTAC	6 cut(s)	124, 401, 459, 715, 875, 1184
RseI	CAYNNNNRTG	2 cut(s)	483, 1142
SalI	GTCGAC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	330, 930
SatI	GCNGC	5 cut(s)	22, 131, 241, 528, 605
Sau3AI	GATC	6 cut(s)	382, 439, 705, 957, 1244, 1272
Sau96I	GGNCC	1 cut(s)	819
ScaI	AGTACT	2 cut(s)	125, 460
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	4 cut(s)	306, 627, 1019, 1350
SfaNI	GCATC	6 cut(s)	136, 177, 258, 484, 657, 1047
SmiMI	CAYNNNNRTG	2 cut(s)	483, 1142
SmlI	CTYRAG	2 cut(s)	395, 465
SmoI	CTYRAG	2 cut(s)	395, 465
Sse9I	AATT	7 cut(s)	182, 563, 824, 837, 952, 979, 1026
SseBI	AGGCCT	1 cut(s)	907
SsiI	CCGC	4 cut(s)	241, 604, 670, 794
SspMI	CTAG	2 cut(s)	812, 939
StuI	AGGCCT	1 cut(s)	907
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	938
TaaI	ACNGT	3 cut(s)	220, 1183, 1297
TaiI	ACGT	3 cut(s)	232, 505, 880
TaqI	TCGA	5 cut(s)	352, 442, 987, 1173, 1299
TasI	AATT	7 cut(s)	182, 563, 824, 837, 952, 979, 1026
TatI	WGTACW	2 cut(s)	123, 458
TauI	GCSGC	2 cut(s)	243, 607
TfiI	GAWTC	2 cut(s)	425, 799
Tru1I	TTAA	2 cut(s)	330, 930
Tru9I	TTAA	2 cut(s)	330, 930
TscAI	CASTG	2 cut(s)	606, 632
TseFI	GTSAC	2 cut(s)	1135, 1229
TseI	GCWGC	3 cut(s)	21, 130, 527
Tsp45I	GTSAC	2 cut(s)	1135, 1229
TspDTI	ATGAA	9 cut(s)	171, 190, 900, 930, 955, 972, 1191, 1296, 1365
TspRI	CASTG	2 cut(s)	606, 632
XapI	RAATTY	2 cut(s)	979, 1026
XceI	RCATGY	1 cut(s)	277
XmaJI	CCTAGG	1 cut(s)	938
XmiI	GTMKAC	2 cut(s)	352, 1261
XspI	CTAG	2 cut(s)	812, 939
ZrmI	AGTACT	2 cut(s)	125, 460
Zsp2I	ATGCAT	2 cut(s)	251, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.