RLG00000002398

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
33435177 .. 33439189
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002398

Sequence Viewer

Length: 1383 bp
ATGGCAGAAGAAGAACTCAGCAACTCTTTAGAGTTTACTCCAACATGGGTGGTAGCAGGTGTTTGCTTTGTCATTGTTCTGTTATCTCTTTTTGCCGAGCGTGGTCTTCATAAACTTGGAAAGTACTTACTGCATGAGAATCAAGATGCACTATATGAAGCCTTACAAAAACTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTCCCTTCTGCTGACTGTAACTCAACGTTCCATAAGCCGCATATGCATCCCTGCCCATGTCGCAAATCATATGCTACCATGTACGAGGGAAACTGCTGAGCACAAAACCCCTGAACATTACTTTCTTAATCACTCTACAAACAATGGTCGACGCCTTCTGTCTTCAGAAACAACTTCCAATCACTGTCAGCTCAAGATACGACAATGGAAGCACTGGGAGGATTCCATCCGGAAGGATCGAAGAAGTGGTAAAAGTTCAGTAGTTCAACATCACCATCGTGCGTTCTTGAAAGAACGTGCAGATGGATATTGGAGAAGAGCAGCTATTATAGGTTGGATGATAGCATTCTTCAAACAATTTTATGGCTCTGTCACCAAGTCAGACTACATTGCACTGCGGCAAGGGTTTATCAAGGAGCACTGCCCTAGAAATCCTGATTTTGATTTTCACAAATACATGATGCGGACACTTGGAATTGATTTTAGGAAGATTGTTGGGATCAGCTGGTACCTGTGGCTCTTTGTTGTGCTGTTTTTGTTGCTGAATGTTGATGGATGGAACACATACTTTTGGTTAGCATTTTTACCGCTGATTCTTCTGCTTCTAGTGGGGGCCAAATTGGAACACATAATCAGCCGTTTGGCTCAGGATGTTAAACAAACAGGAGTGCATGATAATGAATCAGCTATAAGAGTGAGGCCTTCAGATGAACACTTCTGGTTTAACAATCCTAAAATTGTTCTCAATTTGATCCACTTCATTCTGTTTCAAAATTCATTCGAGATTGCTTTCTTCTTCTGGATTTGGAGCACCTATGGAATTCACTCATGCATCATGGAAAAGTTGGGCTACATCATCGCAAGACTTTTTATGGGTGTGATAGTTCAAGTGCTTTGCAGTTACAGCACCCTACCATTGTATGTTATCGTCACCCAGATGGGTACCATGTTCAAGGAGGGAATTTTCGATGACAGTATACATGAGGCCATCGGTAAATGGTCTGAAGGCGCAATGAGTAGACATGACGATAGCAAGCCATCCTCCTCACATAGTATGCACAAAATGATCAACAATGAAGCCTCCACAGCTGTCGATGTTGCAGAACAAGAAATGGTTGTCATGGAAAGAAGTATAAATGTGCTCCCTTGTCAAGTCCAGCCACCTTCTTCATCCTCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

53.3

Weight (kDa)

8.07

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 126 7e-38 Mlo family
Mlo PF03094 123 - 426 4e-114 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011715)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
Acc65I GGTACC 2 cut(s) 711, 1145
AccB1I GGYRCC 2 cut(s) 711, 1145
AccI GTMKAC 3 cut(s) 352, 1180, 1222
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 4 cut(s) 241, 601, 667, 791
AclI AACGTT 1 cut(s) 229
AclWI GGATC 3 cut(s) 447, 710, 949
AcsI RAATTY 3 cut(s) 976, 1023, 1164
AcuI CTGAAG 3 cut(s) 351, 891, 1227
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 4 cut(s) 125, 286, 713, 1147
AgsI TTSAA 6 cut(s) 470, 493, 556, 974, 1091, 1156
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 5 cut(s) 394, 527, 708, 890, 1292
AluI AGCT 5 cut(s) 394, 527, 708, 890, 1292
Alw21I GWGCWC 4 cut(s) 306, 624, 1016, 1347
AlwI GGATC 3 cut(s) 447, 710, 949
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 3 cut(s) 816, 902, 1188
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 976, 1023, 1164
Asp718I GGTACC 2 cut(s) 711, 1145
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 1 cut(s) 816
AsuHPI GGTGA 3 cut(s) 467, 568, 1126
BanI GGYRCC 2 cut(s) 711, 1145
BbsI GAAGAC 2 cut(s) 98, 357
Bbv12I GWGCWC 4 cut(s) 306, 624, 1016, 1347
BbvI GCAGC 1 cut(s) 536
BccI CCATC 8 cut(s) 437, 486, 500, 749, 753, 1135, 1199, 1249
BceAI ACGGC 1 cut(s) 825
BclI TGATCA 1 cut(s) 1269
BfaI CTAG 2 cut(s) 630, 809
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 3 cut(s) 241, 525, 602
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 3 cut(s) 242, 526, 603
BmcAI AGTACT 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 816
BmiI GGNNCC 3 cut(s) 713, 817, 1147
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 5 cut(s) 136, 177, 258, 654, 1044
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 98, 357
Bpu10I CCTNAGC 1 cut(s) 849
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 591, 1221
BseAI TCCGGA 1 cut(s) 432
BseGI GGATG 7 cut(s) 249, 429, 546, 764, 859, 1241, 1373
BseMI GCAATG 2 cut(s) 591, 1221
BseMII CTCAG 3 cut(s) 31, 291, 863
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 1237
BseXI GCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 3 cut(s) 818, 904, 1190
BshNI GGYRCC 2 cut(s) 711, 1145
BsiHKAI GWGCWC 4 cut(s) 306, 624, 1016, 1347
BsiSI CCGG 1 cut(s) 433
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 818, 904, 1190
Bsp1286I GDGCHC 4 cut(s) 306, 624, 1016, 1347
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 4 cut(s) 439, 702, 954, 1269
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 4 cut(s) 241, 601, 667, 791
BspANI GGCC 3 cut(s) 818, 904, 1190
BspCNI CTCAG 3 cut(s) 30, 292, 862
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 713, 817, 1147
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 3 cut(s) 447, 710, 949
BspQI GCTCTTC 1 cut(s) 514
BspT107I GGYRCC 2 cut(s) 711, 1145
BsrDI GCAATG 2 cut(s) 591, 1221
BsrI ACTGG 1 cut(s) 422
BssMI GATC 4 cut(s) 439, 702, 954, 1269
BssNAI GTATAC 1 cut(s) 1181
BssNI GRCGYC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 1181
Bst4CI ACNGT 3 cut(s) 220, 389, 1178
Bst6I CTCTTC 1 cut(s) 514
BstACI GRCGYC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 1238
BstDEI CTNAG 4 cut(s) 17, 300, 849, 1380
BstF5I GGATG 7 cut(s) 249, 429, 546, 764, 859, 1241, 1373
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 4 cut(s) 442, 705, 957, 1272
BstMBI GATC 4 cut(s) 439, 702, 954, 1269
BstMWI GCNNNNNNNGC 4 cut(s) 246, 263, 1107, 1289
BstV1I GCAGC 1 cut(s) 536
BstV2I GAAGAC 2 cut(s) 98, 357
BstZ17I GTATAC 1 cut(s) 1181
BsuRI GGCC 3 cut(s) 818, 904, 1190
BtgZI GCGATG 1 cut(s) 1045
BtsCI GGATG 7 cut(s) 249, 429, 546, 764, 859, 1241, 1373
BtsI GCAGTG 2 cut(s) 596, 622
BtsIMutI CAGTG 4 cut(s) 385, 415, 596, 622
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 1238
CfoI GCGC 1 cut(s) 1214
Cfr13I GGNCC 1 cut(s) 816
CseI GACGC 1 cut(s) 363
Csp6I GTAC 4 cut(s) 124, 285, 712, 1146
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviQI GTAC 4 cut(s) 124, 285, 712, 1146
DdeI CTNAG 4 cut(s) 17, 300, 849, 1380
DpnI GATC 4 cut(s) 441, 704, 956, 1271
DpnII GATC 4 cut(s) 439, 702, 954, 1269
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 904
Eco57I CTGAAG 3 cut(s) 351, 891, 1227
EcoRI GAATTC 1 cut(s) 1023
EcoT22I ATGCAT 2 cut(s) 251, 1037
FauNDI CATATG 2 cut(s) 245, 273
FbaI TGATCA 1 cut(s) 1269
FblI GTMKAC 3 cut(s) 352, 1180, 1222
Fnu4HI GCNGC 3 cut(s) 241, 525, 602
FokI GGATG 7 cut(s) 236, 416, 553, 771, 866, 1228, 1360
Fsp4HI GCNGC 3 cut(s) 241, 525, 602
FspBI CTAG 2 cut(s) 630, 809
GlaI GCGC 1 cut(s) 1213
GluI GCNGC 3 cut(s) 241, 525, 602
HaeIII GGCC 3 cut(s) 818, 904, 1190
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 1214
Hin1I GRCGYC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 4 cut(s) 139, 425, 796, 884
HpaII CCGG 1 cut(s) 433
HphI GGTGA 3 cut(s) 467, 568, 1126
Hpy166II GTNNAC 4 cut(s) 36, 353, 1181, 1223
Hpy188I TCNGA 4 cut(s) 370, 586, 910, 1207
Hpy188III TCNNGA 8 cut(s) 143, 397, 433, 490, 638, 851, 985, 1003
Hpy8I GTNNAC 4 cut(s) 36, 353, 1181, 1223
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 6 cut(s) 218, 368, 430, 915, 1202, 1377
HpyCH4III ACNGT 3 cut(s) 220, 389, 1178
HpyCH4IV ACGT 2 cut(s) 229, 499
HpyF10VI GCNNNNNNNGC 4 cut(s) 246, 263, 1107, 1289
HpyF3I CTNAG 4 cut(s) 17, 300, 849, 1380
HpySE526I ACGT 2 cut(s) 229, 499
Hsp92I GRCGYC 1 cut(s) 355
HspAI GCGC 1 cut(s) 1212
Kpn2I TCCGGA 1 cut(s) 432
KpnI GGTACC 2 cut(s) 715, 1149
Ksp22I TGATCA 1 cut(s) 1269
Kzo9I GATC 4 cut(s) 439, 702, 954, 1269
LguI GCTCTTC 1 cut(s) 514
LmnI GCTCC 3 cut(s) 619, 1011, 1350
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 5 cut(s) 136, 177, 258, 654, 1044
MaeI CTAG 2 cut(s) 630, 809
MaeII ACGT 2 cut(s) 229, 499
MaeIII GTNAC 4 cut(s) 220, 574, 1103, 1132
MalI GATC 4 cut(s) 441, 704, 956, 1271
MboI GATC 4 cut(s) 439, 702, 954, 1269
MhlI GDGCHC 4 cut(s) 306, 624, 1016, 1347
MluCI AATT 9 cut(s) 182, 560, 678, 821, 939, 949, 976, 1023, 1164
MmeI TCCRAC 2 cut(s) 65, 518
MnlI CCTC 8 cut(s) 282, 415, 894, 1153, 1180, 1255, 1258, 1294
Mph1103I ATGCAT 2 cut(s) 251, 1037
MroI TCCGGA 1 cut(s) 432
MseI TTAA 3 cut(s) 330, 858, 927
MslI CAYNNNNRTG 3 cut(s) 480, 879, 1139
MspA1I CMGCKG 3 cut(s) 708, 793, 1292
MspI CCGG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 548
MwoI GCNNNNNNNGC 4 cut(s) 246, 263, 1107, 1289
NdeI CATATG 2 cut(s) 245, 273
NdeII GATC 4 cut(s) 439, 702, 954, 1269
NlaIV GGNNCC 3 cut(s) 713, 817, 1147
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 574, 1132
NsiI ATGCAT 2 cut(s) 251, 1037
OliI CACNNNNGTG 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 47
PceI AGGCCT 1 cut(s) 904
PciSI GCTCTTC 1 cut(s) 514
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 4 cut(s) 139, 425, 796, 884
PkrI GCNGC 3 cut(s) 242, 526, 603
Psp1406I AACGTT 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 713, 817, 1147
PspPI GGNCC 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 708, 1292
RsaI GTAC 4 cut(s) 125, 286, 713, 1147
RsaNI GTAC 4 cut(s) 124, 285, 712, 1146
RseI CAYNNNNRTG 3 cut(s) 480, 879, 1139
SalI GTCGAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 514
SaqAI TTAA 3 cut(s) 330, 858, 927
SatI GCNGC 3 cut(s) 241, 525, 602
Sau3AI GATC 4 cut(s) 439, 702, 954, 1269
Sau96I GGNCC 1 cut(s) 816
ScaI AGTACT 1 cut(s) 125
SduI GDGCHC 4 cut(s) 306, 624, 1016, 1347
SfaNI GCATC 5 cut(s) 136, 177, 258, 654, 1044
SmiMI CAYNNNNRTG 3 cut(s) 480, 879, 1139
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 9 cut(s) 182, 560, 678, 821, 939, 949, 976, 1023, 1164
SseBI AGGCCT 1 cut(s) 904
SsiI CCGC 4 cut(s) 241, 601, 667, 791
SspMI CTAG 2 cut(s) 630, 809
StuI AGGCCT 1 cut(s) 904
TaaI ACNGT 3 cut(s) 220, 389, 1178
TaiI ACGT 2 cut(s) 232, 502
TaqI TCGA 5 cut(s) 352, 442, 984, 1170, 1296
TasI AATT 9 cut(s) 182, 560, 678, 821, 939, 949, 976, 1023, 1164
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 243, 604
TfiI GAWTC 4 cut(s) 139, 425, 796, 884
Tru1I TTAA 3 cut(s) 330, 858, 927
Tru9I TTAA 3 cut(s) 330, 858, 927
TscAI CASTG 4 cut(s) 392, 422, 603, 629
TseFI GTSAC 2 cut(s) 574, 1132
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 574, 1132
TspDTI ATGAA 9 cut(s) 98, 171, 190, 897, 927, 952, 969, 1293, 1362
TspRI CASTG 4 cut(s) 392, 422, 603, 629
XapI RAATTY 3 cut(s) 976, 1023, 1164
XmiI GTMKAC 3 cut(s) 352, 1180, 1222
XspI CTAG 2 cut(s) 630, 809
ZrmI AGTACT 1 cut(s) 125
Zsp2I ATGCAT 2 cut(s) 251, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.