AT4G24330

Protein of unknown function (DUF1682)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007803
Physical Location & Seq
Reverse (-)
12603512 .. 12606417
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24330.1

Sequence Viewer

Length: 1437 bp
ATGAATCGTCTCTTTTCTCTCTTCTCCATAGCTCTGATCGCTTTCCTCTGCCTCCACCATCATGTTCTCGCTTCTTCCTCTTCCGACTTCGAAGGTTTCGATGCTGAAGACGACGATGTTTCAGAAGATTCCACTGAGCTTCACCACTCTCTCCGTCCTCCTCTTCTGACTCAGTCTGAGTCAACGGTTCTGGATCTGGACCCATCTCCCGATTCTGATTCTACTCCTGCATCTAAATCTGATCCTCCCACTCAGACCGTGAAGCCTTCGTCCTCCATCTCCTTCGATTACTGGGATGAAGATGAGTTCGAAGGATTGCCGGAGGACGAGAAATCTACGGAGTCTCCGGTTTTTTCCGATGACGCCTCCTCTCCTGCCGATCCACAGACGCCGGATCTTGAGTCTGCTTCAGAAACTCCAGATACTGACATTCCGAAGAAGATGCAATCGTACACTGTGGAGATCGTTTGCGTCTCTATATTGATTGGTTACGCTATCAATTACTTCACTGGTAAACGTGAAAATGAGAACCTCGCTTTGGCTTGGGCTTCCAAATTTGGTCTTAAAGATACGATTTTTGAGAAGAACTTCAGTTTGCTTGGAGTTGGTGAAGGAGAAGACTCTCCTTTGTTGCTGAAAGAAGCGACGAATGTGTTTAAGTTCTATGCCAGTGGGCGTAGGTATTGCCATGGGCTTTTGGCGACTTTGGAGCTTAAGAGTAGACACGATCTGATCTCAAGGCTATTCAACTCTGTCGTGCCTTGTAAAGATGAGATTAGTTTTGAGGTGTATATGAATGATGAAGCCATGGATCACATTGTGTTTGCTATGGCGAGGAAGAAGGCGGCTAAAACGATGCACAAGGAGCTGAGGGATCTGCAGAGATTTGGAGGGATGGTTCCCAGTCCTGGCGGGAGGAAGTGGGTAACGGAGGAGTTAGCTGTGGTCTCTGAGTCTAAGGAGGTAGCTGGAGATATGATCACCGATGTTGTACTTGATCAGGTTTTTGGTGACAAGTCTTTTGAAAAGTTTGGGAAGTATTTCATCTCAATGCATTTCTCGGATCAACATCCTGGCAAACACAGGAAGATGCTGCTTTTCAAGTTTGCCTTACCTGATATTAAACACATGGATGATATGGTTCGGTTGATAGCGCTAATTCCGTATTACATTGACTTAATTGGGCGCTACAAGCTCAGCTCTCAGGCAAGGAACAAAACTGACGGTGCTAGGCAAAAGGCGGCTCAGGAAGCGTACAAGGAACTTGAGAATGTGAGACAAGAGGCATTGCAGAGAAAGAAAGCCGAAAAGAAGAAAATATTGGAGGAGGCACAGGCAAAGCTTAGCTCCGAGGCTCTAAGGAAGAAAGAAGCAAAAGAACGTGCACGCCAGATGAAAAAGTCAATGCCGAAAGTTAAGATGAGTCGTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1682

Protein Analysis

478

Amino Acids

53.95

Weight (kDa)

5.64

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC47 PF07946 150 - 467 7.1e-84 PAT complex subunit CCDC47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 721
AciI CCGC 3 cut(s) 845, 912, 1241
AclWI GGATC 7 cut(s) 201, 236, 374, 402, 819, 882, 1071
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 3 cut(s) 126, 393, 574
AcyI GRCGYC 2 cut(s) 363, 389
AdeI CACNNNGTG 1 cut(s) 820
AfaI GTAC 3 cut(s) 452, 993, 1256
AfeI AGCGCT 1 cut(s) 1155
AfiI CCNNNNNNNGG 2 cut(s) 538, 908
AflII CTTAAG 1 cut(s) 713
AgsI TTSAA 3 cut(s) 748, 1025, 1102
AjnI CCWGG 2 cut(s) 907, 1072
AjuI GAANNNNNNNTTGG 4 cut(s) 521, 553, 1304, 1336
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
Alw21I GWGCWC 1 cut(s) 1387
Alw26I GTCTC 5 cut(s) 14, 348, 478, 952, 1270
Alw44I GTGCAC 1 cut(s) 1383
AlwI GGATC 7 cut(s) 201, 236, 374, 402, 819, 882, 1071
AlwNI CAGNNNCTG 1 cut(s) 425
Aor51HI AGCGCT 1 cut(s) 1155
ApaLI GTGCAC 1 cut(s) 1383
ApeKI GCWGC 1 cut(s) 1093
ApoI RAATTY 1 cut(s) 554
ArsI GACNNNNNNTTYG 2 cut(s) 1004, 1036
Asp700I GAANNNNTTC 2 cut(s) 587, 1040
AspLEI GCGC 2 cut(s) 1156, 1188
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 134, 620, 973, 1022
AsuII TTCGAA 2 cut(s) 90, 309
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 1387
BbsI GAAGAC 2 cut(s) 114, 624
Bbv12I GWGCWC 1 cut(s) 1387
BbvCI CCTCAGC 1 cut(s) 869
BbvI GCAGC 1 cut(s) 1080
BccI CCATC 4 cut(s) 66, 211, 284, 889
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 2 cut(s) 909, 1074
BclI TGATCA 2 cut(s) 978, 997
BcoDI GTCTC 5 cut(s) 14, 348, 478, 952, 1270
BfaI CTAG 2 cut(s) 1230, 1435
BfmI CTRYAG 1 cut(s) 878
BfoI RGCGCY 2 cut(s) 1157, 1189
BfrI CTTAAG 1 cut(s) 713
BisI GCNGC 3 cut(s) 846, 1094, 1242
BlpI GCTNAGC 2 cut(s) 1196, 1343
BlsI GCNGC 3 cut(s) 847, 1095, 1243
Bme1390I CCNGG 2 cut(s) 909, 1074
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 201, 900
BmrFI CCNGG 2 cut(s) 909, 1074
BmrI ACTGGG 2 cut(s) 301, 897
BmsI GCATC 5 cut(s) 91, 239, 432, 846, 1080
BmuI ACTGGG 2 cut(s) 301, 897
BpiI GAAGAC 2 cut(s) 114, 624
BpmI CTGGAG 2 cut(s) 402, 990
Bpu10I CCTNAGC 2 cut(s) 869, 1245
Bpu1102I GCTNAGC 2 cut(s) 1196, 1343
Bpu14I TTCGAA 2 cut(s) 90, 309
BpuEI CTTGAG 3 cut(s) 419, 721, 1286
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 2 cut(s) 363, 389
BsaI GGTCTC 1 cut(s) 952
BsaJI CCNNGG 3 cut(s) 688, 807, 1350
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 328, 358, 882, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 908
Bse1I ACTGG 4 cut(s) 296, 514, 669, 903
Bse3DI GCAATG 1 cut(s) 1286
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 2 cut(s) 909, 1074
BseDI CCNNGG 3 cut(s) 688, 807, 1350
BseGI GGATG 4 cut(s) 301, 900, 1069, 1138
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 2 cut(s) 538, 908
BseMI GCAATG 1 cut(s) 1286
BseMII CTCAG 9 cut(s) 126, 168, 185, 266, 860, 942, 1210, 1217, 1259
BseNI ACTGG 4 cut(s) 296, 514, 669, 903
BseRI GAGGAG 4 cut(s) 150, 358, 947, 1340
BseSI GKGCMC 1 cut(s) 1387
BseXI GCAGC 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 1387
BsiSI CCGG 3 cut(s) 320, 347, 392
BslI CCNNNNNNNGG 2 cut(s) 538, 908
BsmAI GTCTC 5 cut(s) 14, 348, 478, 952, 1270
BsmBI CGTCTC 2 cut(s) 14, 478
Bso31I GGTCTC 1 cut(s) 952
Bsp119I TTCGAA 2 cut(s) 90, 309
Bsp1286I GDGCHC 1 cut(s) 1387
Bsp1720I GCTNAGC 2 cut(s) 1196, 1343
Bsp19I CCATGG 2 cut(s) 688, 807
BspACI CCGC 3 cut(s) 845, 912, 1241
BspCNI CTCAG 9 cut(s) 127, 169, 184, 265, 861, 943, 1209, 1216, 1258
BspLI GGNNCC 2 cut(s) 201, 900
BspMAI CTGCAG 1 cut(s) 882
BspPI GGATC 7 cut(s) 201, 236, 374, 402, 819, 882, 1071
BspT104I TTCGAA 2 cut(s) 90, 309
BspTI CTTAAG 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 1286
BsrI ACTGG 4 cut(s) 296, 514, 669, 903
BssECI CCNNGG 3 cut(s) 688, 807, 1350
BssNI GRCGYC 2 cut(s) 363, 389
BssT1I CCWWGG 2 cut(s) 688, 807
Bst2UI CCWGG 2 cut(s) 909, 1074
Bst4CI ACNGT 4 cut(s) 187, 259, 457, 1226
Bst6I CTCTTC 3 cut(s) 26, 85, 168
BstACI GRCGYC 2 cut(s) 363, 389
BstAFI CTTAAG 1 cut(s) 713
BstBI TTCGAA 2 cut(s) 90, 309
BstC8I GCNNGC 1 cut(s) 1387
BstDSI CCRYGG 2 cut(s) 688, 807
BstF5I GGATG 4 cut(s) 301, 900, 1069, 1138
BstH2I RGCGCY 2 cut(s) 1157, 1189
BstHHI GCGC 2 cut(s) 1156, 1188
BstMAI GTCTC 5 cut(s) 14, 348, 478, 952, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 38, 865, 1192, 1250
BstNI CCWGG 2 cut(s) 909, 1074
BstSCI CCNGG 2 cut(s) 907, 1072
BstSFI CTRYAG 1 cut(s) 878
BstSLI GKGCMC 1 cut(s) 1387
BstV1I GCAGC 1 cut(s) 1080
BstV2I GAAGAC 2 cut(s) 114, 624
BstX2I RGATCY 3 cut(s) 193, 394, 874
BstYI RGATCY 3 cut(s) 193, 394, 874
BtgI CCRYGG 2 cut(s) 688, 807
BtsCI GGATG 4 cut(s) 301, 900, 1069, 1138
BtsIMutI CAGTG 4 cut(s) 132, 453, 507, 676
Cac8I GCNNGC 1 cut(s) 1387
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 2 cut(s) 1156, 1188
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 3 cut(s) 371, 397, 460
Csp6I GTAC 3 cut(s) 451, 992, 1255
CviAII CATG 4 cut(s) 62, 689, 808, 1129
CviQI GTAC 3 cut(s) 451, 992, 1255
DraIII CACNNNGTG 1 cut(s) 820
Eam1104I CTCTTC 3 cut(s) 26, 85, 168
EarI CTCTTC 3 cut(s) 26, 85, 168
Eco130I CCWWGG 2 cut(s) 688, 807
Eco31I GGTCTC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 1155
Eco57I CTGAAG 3 cut(s) 126, 393, 574
EcoRII CCWGG 2 cut(s) 907, 1072
EcoT14I CCWWGG 2 cut(s) 688, 807
EcoT22I ATGCAT 1 cut(s) 1056
ErhI CCWWGG 2 cut(s) 688, 807
Esp3I CGTCTC 2 cut(s) 14, 478
FaeI CATG 4 cut(s) 65, 692, 811, 1132
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FatI CATG 4 cut(s) 61, 688, 807, 1128
FauI CCCGC 1 cut(s) 905
FbaI TGATCA 2 cut(s) 978, 997
FblI GTMKAC 1 cut(s) 721
Fnu4HI GCNGC 3 cut(s) 846, 1094, 1242
FokI GGATG 4 cut(s) 308, 907, 1056, 1145
Fsp4HI GCNGC 3 cut(s) 846, 1094, 1242
FspBI CTAG 2 cut(s) 1230, 1435
GlaI GCGC 2 cut(s) 1155, 1187
GluI GCNGC 3 cut(s) 846, 1094, 1242
GsuI CTGGAG 2 cut(s) 402, 990
HaeII RGCGCY 2 cut(s) 1157, 1189
HapII CCGG 3 cut(s) 320, 347, 392
HgaI GACGC 3 cut(s) 371, 397, 460
HhaI GCGC 2 cut(s) 1156, 1188
Hin1I GRCGYC 2 cut(s) 363, 389
Hin1II CATG 4 cut(s) 65, 692, 811, 1132
Hin6I GCGC 2 cut(s) 1154, 1186
HinP1I GCGC 2 cut(s) 1154, 1186
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 1340
HpaII CCGG 3 cut(s) 320, 347, 392
HphI GGTGA 4 cut(s) 134, 620, 973, 1022
Hpy166II GTNNAC 5 cut(s) 183, 453, 515, 722, 1385
Hpy188III TCNNGA 6 cut(s) 191, 197, 209, 398, 419, 1247
Hpy8I GTNNAC 5 cut(s) 183, 453, 515, 722, 1385
Hpy99I CGWCG 2 cut(s) 116, 649
HpyAV CCTTC 6 cut(s) 86, 276, 292, 305, 605, 835
HpyCH4III ACNGT 4 cut(s) 187, 259, 457, 1226
HpyCH4IV ACGT 2 cut(s) 517, 1381
HpyCH4V TGCA 7 cut(s) 230, 445, 859, 880, 1054, 1291, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 865, 1192, 1250
HpySE526I ACGT 2 cut(s) 517, 1381
Hsp92I GRCGYC 2 cut(s) 363, 389
Hsp92II CATG 4 cut(s) 65, 692, 811, 1132
HspAI GCGC 2 cut(s) 1154, 1186
Ksp22I TGATCA 2 cut(s) 978, 997
LmnI GCTCC 3 cut(s) 709, 865, 1352
Lsp1109I GCAGC 1 cut(s) 1080
LweI GCATC 5 cut(s) 91, 239, 432, 846, 1080
MaeI CTAG 2 cut(s) 1230, 1435
MaeII ACGT 2 cut(s) 517, 1381
MaeIII GTNAC 4 cut(s) 488, 925, 1010, 1430
MflI RGATCY 3 cut(s) 193, 394, 874
MhlI GDGCHC 1 cut(s) 1387
MluCI AATT 4 cut(s) 499, 554, 1158, 1179
MlyI GAGTC 7 cut(s) 163, 188, 350, 410, 614, 962, 1432
MmeI TCCRAC 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 1056
MroXI GAANNNNTTC 2 cut(s) 587, 1040
MseI TTAA 6 cut(s) 564, 657, 714, 1122, 1178, 1416
MslI CAYNNNNRTG 3 cut(s) 60, 1049, 1131
MspCI CTTAAG 1 cut(s) 713
MspI CCGG 3 cut(s) 320, 347, 392
MspR9I CCNGG 2 cut(s) 909, 1074
MvaI CCWGG 2 cut(s) 909, 1074
MwoI GCNNNNNNNGC 4 cut(s) 38, 865, 1192, 1250
NcoI CCATGG 2 cut(s) 688, 807
NlaIII CATG 4 cut(s) 65, 692, 811, 1132
NlaIV GGNNCC 2 cut(s) 201, 900
NmuCI GTSAC 2 cut(s) 1010, 1430
NsiI ATGCAT 1 cut(s) 1056
NspV TTCGAA 2 cut(s) 90, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 587, 1040
PfeI GAWTC 4 cut(s) 4, 128, 212, 218
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 3 cut(s) 847, 1095, 1243
PleI GAGTC 7 cut(s) 163, 187, 349, 409, 614, 961, 1431
PpsI GAGTC 7 cut(s) 163, 187, 349, 409, 614, 961, 1431
Psp6I CCWGG 2 cut(s) 907, 1072
PspGI CCWGG 2 cut(s) 907, 1072
PspN4I GGNNCC 2 cut(s) 201, 900
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 882
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 3 cut(s) 193, 394, 874
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 3 cut(s) 452, 993, 1256
RsaNI GTAC 3 cut(s) 451, 992, 1255
RseI CAYNNNNRTG 3 cut(s) 60, 1049, 1131
SaqAI TTAA 6 cut(s) 564, 657, 714, 1122, 1178, 1416
SatI GCNGC 3 cut(s) 846, 1094, 1242
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 7 cut(s) 163, 188, 350, 410, 614, 962, 1432
ScrFI CCNGG 2 cut(s) 909, 1074
SduI GDGCHC 1 cut(s) 1387
SfaNI GCATC 5 cut(s) 91, 239, 432, 846, 1080
SfcI CTRYAG 1 cut(s) 878
SfuI TTCGAA 2 cut(s) 90, 309
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 3 cut(s) 60, 1049, 1131
SmlI CTYRAG 4 cut(s) 398, 713, 736, 1265
SmoI CTYRAG 4 cut(s) 398, 713, 736, 1265
Sse9I AATT 4 cut(s) 499, 554, 1158, 1179
SsiI CCGC 3 cut(s) 845, 912, 1241
SspI AATATT 1 cut(s) 1320
SspMI CTAG 2 cut(s) 1230, 1435
StyD4I CCNGG 2 cut(s) 907, 1072
StyI CCWWGG 2 cut(s) 688, 807
TaaI ACNGT 4 cut(s) 187, 259, 457, 1226
TaiI ACGT 2 cut(s) 520, 1384
TaqI TCGA 4 cut(s) 90, 99, 285, 309
TasI AATT 4 cut(s) 499, 554, 1158, 1179
TatI WGTACW 1 cut(s) 991
TauI GCSGC 2 cut(s) 848, 1244
TfiI GAWTC 4 cut(s) 4, 128, 212, 218
Tru1I TTAA 6 cut(s) 564, 657, 714, 1122, 1178, 1416
Tru9I TTAA 6 cut(s) 564, 657, 714, 1122, 1178, 1416
TscAI CASTG 4 cut(s) 139, 460, 514, 676
TseFI GTSAC 2 cut(s) 1010, 1430
TseI GCWGC 1 cut(s) 1093
Tsp45I GTSAC 2 cut(s) 1010, 1430
TspDTI ATGAA 6 cut(s) 17, 312, 809, 816, 1033, 1409
TspGWI ACGGA 4 cut(s) 143, 353, 944, 1152
TspRI CASTG 4 cut(s) 139, 460, 514, 676
Tth111I GACNNNGTC 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 713
VneI GTGCAC 1 cut(s) 1383
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 587, 1040
XspI CTAG 2 cut(s) 1230, 1435
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.