Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007803

Physical Location & Seq

Genomic Coordinates Forward (+)

38131057 .. 38132643

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCAGAAGGAGGTTAGGGACTTGCAGAAGTTTGCCGGGATATTGTCTCCGCCTACTGGAAGGAAGTGGGTTTCTGAGGACCTGGCGGTTATCTCCGAATCTAAGGAAGTGGCTGGTGATTTGATCACTGAGGCTGTGCTCGAACAGGTTTTAGGTGAAAAGGCTTTTGAGAAATTTGGAAAGGGTTTCATCTACATGCATTTTTCAGATCAACATCCAGGCGCGCAAAAGAAGATGCTGTTGTTTAAGTTTGCCCTACCGGATGCAGGTAACATGGCTGATATGACTCGTCTGGTGGCCTTGGTACCATATTATATTGATTTGATTGGGCGCTACAAGCTAAGCAGTCAGGCTCGATCCAAAACTGAAGCTATCAGATCAAAGGCGGCTCAAGAGGCTTACAAAGAACTCCAAAATGCAAGGCAAGAAGCATTGCAAAGAAAGAAGGCGGAGAGGAGAAAGATGATGGAGGAGGCCGAGGCTAAGCTCAGTGCAGAGAGTATTCGCAAGAAAGAAGCAAAGGAGCGTGCTCGTCAGATGAAGAAGGCAATGCCGAAGATAAAAATGACCCGTGGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1682

Protein Analysis

194

Amino Acids

21.96

Weight (kDa)

9.82

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24330 AT5G49945
fragaria_vesca	FvH4_5g28340 FvH4_5g28340 FvH4_5g28340 FvH4_5g28340 FvH4_5g28340
malus_domestica	MD08G1240800.v1.1 MD15G1434000.v1.1
prunus_persica	Prupe.1G577500_v2.0.a1
pyrus_communis	pycom08g20860 pycom08g20870 pycom15g38300 pycom15g38310
rosa_chinensis	RchiOBHm_Chr7g0220701
rosa_laevigata	RLG00000002204
rosa_multiflora	Rmu_sc0001286.1_g000004
rosa_roxburghii	Rroxscaffold_3G00239180
rosa_rugosa	Rorug07G0196600
rosa_samantha	Rh7AG337200 Rh7BG328100 Rh7CG355300 Rh7DG333800
rosa_wichuraiana	Rw7G028770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AccII	CGCG	1 cut(s)	224
AciI	CCGC	4 cut(s)	50, 86, 386, 449
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	56, 266
AjnI	CCWGG	2 cut(s)	81, 217
AluBI	AGCT	4 cut(s)	340, 371, 487, 579
AluI	AGCT	4 cut(s)	340, 371, 487, 579
Alw21I	GWGCWC	2 cut(s)	141, 532
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	2 cut(s)	297, 474
ApoI	RAATTY	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	304
AspLEI	GCGC	3 cut(s)	224, 226, 333
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	128, 167
AvaII	GGWCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	141, 532
BccI	CCATC	1 cut(s)	460
BciT130I	CCWGG	2 cut(s)	83, 219
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	387
BlpI	GCTNAGC	2 cut(s)	341, 483
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	37, 83, 219
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	37, 83, 219
BmsI	GCATC	2 cut(s)	225, 253
Bpu1102I	GCTNAGC	2 cut(s)	341, 483
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	300, 477, 571
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 266
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	431, 555
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	83, 219
BseDI	CCNNGG	3 cut(s)	300, 477, 571
BseGI	GGATG	2 cut(s)	214, 268
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	56, 266
BseMI	GCAATG	2 cut(s)	431, 555
BseMII	CTCAG	3 cut(s)	66, 120, 502
BseNI	ACTGG	1 cut(s)	61
BsePI	GCGCGC	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	469, 485
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	299, 476
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	141, 532
BsiSI	CCGG	2 cut(s)	36, 260
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	56, 266
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	299, 476
Bsp1286I	GDGCHC	2 cut(s)	141, 532
Bsp143I	GATC	4 cut(s)	123, 208, 356, 377
Bsp1720I	GCTNAGC	2 cut(s)	341, 483
BspACI	CCGC	4 cut(s)	50, 86, 386, 449
BspANI	GGCC	2 cut(s)	299, 476
BspCNI	CTCAG	3 cut(s)	67, 121, 501
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	431, 555
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	300, 477, 571
BssHII	GCGCGC	1 cut(s)	222
BssMI	GATC	4 cut(s)	123, 208, 356, 377
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	83, 219
BstC8I	GCNNGC	2 cut(s)	224, 528
BstDEI	CTNAG	6 cut(s)	75, 102, 129, 341, 483, 488
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	214, 268
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	3 cut(s)	224, 226, 333
BstKTI	GATC	4 cut(s)	126, 211, 359, 380
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	123, 208, 356, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 395
BstNI	CCWGG	2 cut(s)	83, 219
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	3 cut(s)	35, 81, 217
BstUI	CGCG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	299, 476
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	214, 268
BtsIMutI	CAGTG	2 cut(s)	126, 496
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	224, 528
CfoI	GCGC	3 cut(s)	224, 226, 333
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	2 cut(s)	196, 274
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	6 cut(s)	75, 102, 129, 341, 483, 488
DpnI	GATC	4 cut(s)	125, 210, 358, 379
DpnII	GATC	4 cut(s)	123, 208, 356, 377
EciI	GGCGGA	2 cut(s)	39, 464
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	81, 217
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	199, 277
FaiI	YATR	5 cut(s)	197, 275, 284, 310, 315
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	195, 273
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	201, 275
Fsp4HI	GCNGC	1 cut(s)	387
GlaI	GCGC	3 cut(s)	223, 225, 332
GluI	GCNGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	299, 476
HapII	CCGG	2 cut(s)	36, 260
HhaI	GCGC	3 cut(s)	224, 226, 333
Hin1II	CATG	2 cut(s)	199, 277
Hin6I	GCGC	3 cut(s)	222, 224, 331
HinP1I	GCGC	3 cut(s)	222, 224, 331
HinfI	GANTC	2 cut(s)	98, 286
HpaII	CCGG	2 cut(s)	36, 260
HphI	GGTGA	2 cut(s)	128, 167
Hpy188I	TCNGA	5 cut(s)	76, 97, 208, 377, 537
Hpy188III	TCNNGA	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	54, 439, 538
HpyCH4V	TGCA	7 cut(s)	4, 25, 199, 266, 419, 436, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 395
HpyF3I	CTNAG	6 cut(s)	75, 102, 129, 341, 483, 488
Hsp92II	CATG	2 cut(s)	199, 277
HspAI	GCGC	3 cut(s)	222, 224, 331
KpnI	GGTACC	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	123, 208, 356, 377
LmnI	GCTCC	1 cut(s)	523
LweI	GCATC	2 cut(s)	225, 253
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	125, 210, 358, 379
MboI	GATC	4 cut(s)	123, 208, 356, 377
MboII	GAAGA	3 cut(s)	244, 553, 568
MhlI	GDGCHC	2 cut(s)	141, 532
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	4, 70, 124, 388, 447, 463, 466, 472
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	2 cut(s)	36, 260
MspR9I	CCNGG	3 cut(s)	37, 83, 219
MvaI	CCWGG	2 cut(s)	83, 219
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	337, 395
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	123, 208, 356, 377
NlaIII	CATG	2 cut(s)	199, 277
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	199
PauI	GCGCGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	81, 217
PspGI	CCWGG	2 cut(s)	81, 217
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PteI	GCGCGC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	123, 208, 356, 377
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	3 cut(s)	37, 83, 219
SduI	GDGCHC	2 cut(s)	141, 532
SetI	ASST	9 cut(s)	15, 84, 150, 157, 271, 342, 373, 489, 581
SfaNI	GCATC	2 cut(s)	225, 253
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	4 cut(s)	50, 86, 386, 449
StyD4I	CCNGG	3 cut(s)	35, 81, 217
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	2 cut(s)	141, 355
TasI	AATT	1 cut(s)	173
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	133, 496
TspDTI	ATGAA	2 cut(s)	178, 554
TspRI	CASTG	2 cut(s)	133, 496
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.