Rh7BG328100

At5g49945-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007803
Physical Location & Seq
Forward (+)
32610804 .. 32615776
4973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG328100.1

Sequence Viewer

Length: 1029 bp
ATGGGTCTCGCTGTCCCACATCTCCTCACTCTCTTCCTCTTCTTCTCTCTTATCTGCTTCTCTCCCATCCTCGCCGACTCCGACTTCGAAGGCTTCGAAGACGCCGACGATATCGACGAAGACTTGGACTCCTCACTCCCTCTCACCACCACCACCCATCCATCCCAAACACTCCTCACCGCGACGGCCACCTCCCAACCGGACCCGGTGCCGGATCCCAGTGATCCTGTTCCGGATTCGGACCCAGCATCATCAACTACTGATTCTCCTAAACCTTCTTCCACCAGCTTTGAGTATTGGGACGAAGACGAGTTCGAAGGTCTACCACAGCAACGGCCACTCACAGTTACTGAAAATGCTACTCCCTCTCCCGATTCCGATCTGAAACCCTCGACCGATCCGAAACAACCACCCGAGAGTTCTTCCAGATCTTACACGGTGGAGATCGCCTGCGGAGGGTTCTTGATCGTTTTCATCATCAATTACTTCACCGGAAAGCGCGTGAACGAGAACCTCGCCCTGGCATGGGCTGCCAAATTCGCAACCAAGGGCACTATTTTCGACAAGAACTTCAGTCTTTTGGGCGTTGGCGAAGGCGATGACTCACCCTTGCTCTTGAAAGAAGGCCAGAACGTGTTCAAATTCTATGCCAGTGGGCGGAGGTGCTGCCAGGGGCTGTTGGCCACTATGGAGCTTAAGAGCCGCCACGATTTGATCTCTTCCATTTTCAATTTGGTGGTGCCTATTAGTAGAGACGAGATTAGTTTCGAGGTTTATATGAATGATGATGCCATGGACCACGTGGTTTTTGCTGTGGCCAAGAAGAAGGCCGCCAAAGCAATGCAGAAGGAGGTTCCCGACTTGCAGAAGTTCGCCACTATTGTTTCGCCTCCTACTGGCAGGAAGTGGGTTGCCGACGACTTGGCGGTTATCTCTGAGTCCAAAGAGGTAGCTGGGGATTTAATCACTGAGGCTGTTCTTGATCAGGTTGGTTCTTCTTGTATCCCAACATATTTGGGTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1682

Protein Analysis

342

Amino Acids

37.27

Weight (kDa)

4.35

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC47 PF07946 144 - 330 1.9e-50 PAT complex subunit CCDC47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 208, 739
AccI GTMKAC 1 cut(s) 322
AccII CGCG 2 cut(s) 182, 501
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 6 cut(s) 180, 453, 658, 703, 831, 926
AclWI GGATC 4 cut(s) 209, 218, 222, 392
AcoI YGGCCR 4 cut(s) 186, 335, 681, 816
AcsI RAATTY 2 cut(s) 536, 641
AcuI CTGAAG 1 cut(s) 556
AcvI CACGTG 1 cut(s) 802
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 7 cut(s) 211, 456, 520, 525, 526, 657, 896
AflII CTTAAG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 3 cut(s) 619, 640, 730
AjnI CCWGG 2 cut(s) 519, 669
AluBI AGCT 3 cut(s) 288, 694, 953
AluI AGCT 3 cut(s) 288, 694, 953
Alw26I GTCTC 2 cut(s) 11, 747
AlwI GGATC 4 cut(s) 209, 218, 222, 392
AlwNI CAGNNNCTG 2 cut(s) 350, 676
Ama87I CYCGRG 1 cut(s) 413
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 6 cut(s) 186, 335, 625, 681, 816, 828
ApeKI GCWGC 2 cut(s) 530, 666
ApoI RAATTY 2 cut(s) 536, 641
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 635
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 202, 241, 796
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 4 cut(s) 136, 169, 481, 597
AsuII TTCGAA 3 cut(s) 87, 96, 315
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 3 cut(s) 202, 241, 796
BaeGI GKGCMC 1 cut(s) 554
BalI TGGCCA 2 cut(s) 683, 818
BamHI GGATCC 1 cut(s) 214
BanI GGYRCC 2 cut(s) 208, 739
BbrPI CACGTG 1 cut(s) 802
BbsI GAAGAC 3 cut(s) 105, 126, 312
BbvI GCAGC 2 cut(s) 517, 653
BccI CCATC 3 cut(s) 74, 165, 169
BceAI ACGGC 2 cut(s) 201, 350
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 521, 671
BciVI GTATCC 1 cut(s) 1013
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 11, 747
BfrI CTTAAG 1 cut(s) 695
BfuI GTATCC 1 cut(s) 1013
BglII AGATCT 1 cut(s) 428
BisI GCNGC 4 cut(s) 531, 667, 703, 831
BlsI GCNGC 4 cut(s) 532, 668, 704, 832
Bme1390I CCNGG 3 cut(s) 206, 521, 671
Bme18I GGWCC 3 cut(s) 202, 241, 796
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 3 cut(s) 202, 241, 796
BmiI GGNNCC 6 cut(s) 204, 210, 216, 243, 741, 855
BmrFI CCNGG 3 cut(s) 206, 521, 671
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 257, 778
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 3 cut(s) 105, 126, 312
Bpu14I TTCGAA 3 cut(s) 87, 96, 315
BpuMI CCSGG 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 802
BsaBI GATNNNNATC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 519, 546, 670, 792
BsaWI WCCGGW 3 cut(s) 199, 232, 491
BsaXI ACNNNNNCTCC 6 cut(s) 113, 143, 250, 280, 352, 382
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 456, 520, 525, 526, 657, 896
Bse1I ACTGG 3 cut(s) 219, 651, 901
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 2 cut(s) 521, 671
BseDI CCNNGG 4 cut(s) 519, 546, 670, 792
BseGI GGATG 3 cut(s) 66, 157, 161
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 7 cut(s) 211, 456, 520, 525, 526, 657, 896
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 927, 960
BseNI ACTGG 3 cut(s) 219, 651, 901
BseRI GAGGAG 3 cut(s) 14, 121, 164
BseSI GKGCMC 1 cut(s) 554
BseXI GCAGC 2 cut(s) 517, 653
BseYI CCCAGC 2 cut(s) 244, 953
Bsh1236I CGCG 2 cut(s) 182, 501
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 6 cut(s) 188, 337, 627, 683, 818, 830
BshNI GGYRCC 2 cut(s) 208, 739
BsiEI CGRYCG 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 5 cut(s) 200, 206, 212, 233, 492
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 7 cut(s) 211, 456, 520, 525, 526, 657, 896
BsmAI GTCTC 2 cut(s) 11, 747
BsmBI CGTCTC 1 cut(s) 747
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 6 cut(s) 188, 337, 627, 683, 818, 830
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 413
Bsp119I TTCGAA 3 cut(s) 87, 96, 315
Bsp1286I GDGCHC 1 cut(s) 554
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 6 cut(s) 180, 453, 658, 703, 831, 926
BspANI GGCC 6 cut(s) 188, 337, 627, 683, 818, 830
BspCNI CTCAG 2 cut(s) 928, 961
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 2 cut(s) 182, 501
BspLI GGNNCC 6 cut(s) 204, 210, 216, 243, 741, 855
BspPI GGATC 4 cut(s) 209, 218, 222, 392
BspT104I TTCGAA 3 cut(s) 87, 96, 315
BspT107I GGYRCC 2 cut(s) 208, 739
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 3 cut(s) 219, 651, 901
BssECI CCNNGG 4 cut(s) 519, 546, 670, 792
BssMI GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 546, 792
Bst2UI CCWGG 2 cut(s) 521, 671
Bst4CI ACNGT 2 cut(s) 346, 439
Bst6I CTCTTC 3 cut(s) 38, 44, 724
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 802
BstBI TTCGAA 3 cut(s) 87, 96, 315
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 936, 969
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 3 cut(s) 66, 157, 161
BstFNI CGCG 2 cut(s) 182, 501
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 9 cut(s) 217, 226, 382, 400, 431, 447, 468, 717, 985
BstMAI GTCTC 2 cut(s) 11, 747
BstMBI GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 530, 539, 836
BstNI CCWGG 2 cut(s) 521, 671
BstSCI CCNGG 3 cut(s) 204, 519, 669
BstSLI GKGCMC 1 cut(s) 554
BstUI CGCG 2 cut(s) 182, 501
BstV1I GCAGC 2 cut(s) 517, 653
BstV2I GAAGAC 3 cut(s) 105, 126, 312
BstX2I RGATCY 2 cut(s) 214, 428
BstYI RGATCY 2 cut(s) 214, 428
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 6 cut(s) 188, 337, 627, 683, 818, 830
BtgI CCRYGG 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 3 cut(s) 66, 157, 161
BtsIMutI CAGTG 3 cut(s) 226, 658, 966
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 2 cut(s) 350, 676
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 3 cut(s) 202, 241, 796
CseI GACGC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 2 cut(s) 525, 793
DdeI CTNAG 2 cut(s) 936, 969
DpnI GATC 9 cut(s) 216, 225, 381, 399, 430, 446, 467, 716, 984
DpnII GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
EaeI YGGCCR 4 cut(s) 186, 335, 681, 816
Eam1104I CTCTTC 3 cut(s) 38, 44, 724
EarI CTCTTC 3 cut(s) 38, 44, 724
EciI GGCGGA 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 546, 792
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 3 cut(s) 202, 241, 796
Eco57I CTGAAG 1 cut(s) 556
Eco72I CACGTG 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 519, 669
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 546, 792
ErhI CCWWGG 2 cut(s) 546, 792
Esp3I CGTCTC 1 cut(s) 747
FaeI CATG 2 cut(s) 528, 796
FaiI YATR 9 cut(s) 526, 648, 689, 777, 779, 794, 1012, 1023, 1025
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 524, 792
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 531, 667, 703, 831
FokI GGATG 3 cut(s) 53, 144, 148
Fsp4HI GCNGC 4 cut(s) 531, 667, 703, 831
GlaI GCGC 1 cut(s) 500
GluI GCNGC 4 cut(s) 531, 667, 703, 831
GsaI CCCAGC 2 cut(s) 248, 957
HaeIII GGCC 6 cut(s) 188, 337, 627, 683, 818, 830
HapII CCGG 5 cut(s) 200, 206, 212, 233, 492
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 501
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 528, 796
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 7 cut(s) 77, 128, 236, 263, 374, 602, 938
HpaII CCGG 5 cut(s) 200, 206, 212, 233, 492
HphI GGTGA 4 cut(s) 136, 169, 481, 597
Hpy166II GTNNAC 2 cut(s) 323, 505
Hpy188I TCNGA 6 cut(s) 82, 241, 379, 384, 402, 937
Hpy188III TCNNGA 7 cut(s) 233, 371, 426, 463, 616, 857, 980
Hpy8I GTNNAC 2 cut(s) 323, 505
Hpy99I CGWCG 4 cut(s) 110, 119, 187, 920
HpyAV CCTTC 7 cut(s) 83, 285, 311, 587, 617, 820, 841
HpyCH4III ACNGT 2 cut(s) 346, 439
HpyCH4IV ACGT 2 cut(s) 633, 801
HpyCH4V TGCA 2 cut(s) 844, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 530, 539, 836
HpyF3I CTNAG 2 cut(s) 936, 969
HpySE526I ACGT 2 cut(s) 633, 801
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 528, 796
HspAI GCGC 1 cut(s) 499
Kpn2I TCCGGA 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 2 cut(s) 517, 653
LweI GCATC 2 cut(s) 257, 778
MaeII ACGT 2 cut(s) 633, 801
MaeIII GTNAC 1 cut(s) 346
MalI GATC 9 cut(s) 216, 225, 381, 399, 430, 446, 467, 716, 984
MboI GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
MflI RGATCY 2 cut(s) 214, 428
MhlI GDGCHC 1 cut(s) 554
MlsI TGGCCA 2 cut(s) 683, 818
MluCI AATT 4 cut(s) 481, 536, 641, 730
MluNI TGGCCA 2 cut(s) 683, 818
MlyI GAGTC 4 cut(s) 71, 122, 596, 947
MmeI TCCRAC 1 cut(s) 105
Mox20I TGGCCA 2 cut(s) 683, 818
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 635
MscI TGGCCA 2 cut(s) 683, 818
MseI TTAA 2 cut(s) 696, 962
Msp20I TGGCCA 2 cut(s) 683, 818
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 5 cut(s) 200, 206, 212, 233, 492
MspR9I CCNGG 3 cut(s) 206, 521, 671
MvaI CCWGG 2 cut(s) 521, 671
MvnI CGCG 2 cut(s) 182, 501
MwoI GCNNNNNNNGC 3 cut(s) 530, 539, 836
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 792
NdeII GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
NlaIII CATG 2 cut(s) 528, 796
NlaIV GGNNCC 6 cut(s) 204, 210, 216, 243, 741, 855
NspV TTCGAA 3 cut(s) 87, 96, 315
PcsI WCGNNNNNNNCGW 5 cut(s) 78, 93, 102, 114, 398
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 3 cut(s) 236, 263, 374
PkrI GCNGC 4 cut(s) 532, 668, 704, 832
PleI GAGTC 4 cut(s) 71, 122, 596, 946
PmaCI CACGTG 1 cut(s) 802
PmlI CACGTG 1 cut(s) 802
PpsI GAGTC 4 cut(s) 71, 122, 596, 946
Ppu21I YACGTR 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 519, 669
PspCI CACGTG 1 cut(s) 802
PspFI CCCAGC 2 cut(s) 244, 953
PspGI CCWGG 2 cut(s) 519, 669
PspN4I GGNNCC 6 cut(s) 204, 210, 216, 243, 741, 855
PspPI GGNCC 3 cut(s) 202, 241, 796
PstNI CAGNNNCTG 2 cut(s) 350, 676
PsuI RGATCY 2 cut(s) 214, 428
SaqAI TTAA 2 cut(s) 696, 962
SatI GCNGC 4 cut(s) 531, 667, 703, 831
Sau3AI GATC 9 cut(s) 214, 223, 379, 397, 428, 444, 465, 714, 982
Sau96I GGNCC 3 cut(s) 202, 241, 796
SchI GAGTC 4 cut(s) 71, 122, 596, 947
ScrFI CCNGG 3 cut(s) 206, 521, 671
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 2 cut(s) 257, 778
SfuI TTCGAA 3 cut(s) 87, 96, 315
SinI GGWCC 3 cut(s) 202, 241, 796
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 4 cut(s) 481, 536, 641, 730
SsiI CCGC 6 cut(s) 180, 453, 658, 703, 831, 926
StyD4I CCNGG 3 cut(s) 204, 519, 669
StyI CCWWGG 2 cut(s) 546, 792
TaaI ACNGT 2 cut(s) 346, 439
TaiI ACGT 2 cut(s) 636, 804
TaqI TCGA 7 cut(s) 87, 96, 114, 315, 392, 561, 768
TaqII GACCGA 1 cut(s) 410
TasI AATT 4 cut(s) 481, 536, 641, 730
TauI GCSGC 2 cut(s) 705, 833
TfiI GAWTC 3 cut(s) 236, 263, 374
Tru1I TTAA 2 cut(s) 696, 962
Tru9I TTAA 2 cut(s) 696, 962
TscAI CASTG 3 cut(s) 226, 658, 973
TseI GCWGC 2 cut(s) 530, 666
TspDTI ATGAA 2 cut(s) 463, 794
TspRI CASTG 3 cut(s) 226, 658, 973
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 202, 241, 796
XapI RAATTY 2 cut(s) 536, 641
XcmI CCANNNNNNNNNTGG 2 cut(s) 730, 799
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.