AT4G24670

tryptophan

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
12727531 .. 12731331
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24670.2

Sequence Viewer

Length: 1323 bp
ATGGGACAGATTCCGAGGTTTCTTTCTTGGAGGAATATGTTGGTCCTCTCGTTGGCCATCAACTTCAGCTTGATTCTAAAGATTTTGAAGGGTGATAGAGAACGAGGAGATTCATGGGACAGAACAGCGTATGTTAGCATATGGCCCGTGGTATCCACCACGGCTTCAGAATCTTCTTCGTTGTCTTCAGCATCTTGCAACTATAGCAAGATTGAAGAAGACGATGATAGAATTATCAATCTCAAATTTGGTGATCCAACGGTGTATGAGAGATATTGGCAGGAAAATGGAGAGGTGACAACAATGGTGATACCTGGATGGCAATCTCTTAGCTATTTTTCAGATGAAAACAACCTCTGTTGGTTTCTTGAGCCAGAGCTTGCCAAAGAGATTGTGAGGGTGCATAAGGTTGTTGGGAATGCTGTAACGCAAGACCGCTTCATTGTTGTTGGCACTGGCTCAACACAATTGTATCAGGCTGCTCTCTATGCTCTCTCCCCACATGATGACTCCGGTCCCATTAATGTCGTGTCAGCCACACCCTATTATAGTACATACCCGTTGATTACAGACTGCCTCAAATCAGGTTTATATCGATGGGGTGGAGATGCAAAGACGTACAAAGAAGATGGTCCATACATTGAACTTGTTACATCTCCAAACAACCCTGATGGGTTCTTGAGAGAATCAGTAGTGAACAGTACTGAAGGTATATTGATCCATGATTTGGCTTACTATTGGCCACAGTATACACCGATAACATCACCAGCTGATCACGATGTTATGCTCTTCACTGCTTCAAAGAGCACTGGCCATGCAGGGATACGGATTGGATGGGCTTTGGTGAAAGACAGAGAGACGGCTAGGAAAATGATAGAGTACATTGAACTCAACACGATTGGGGTTTCAAAGGACTCACAGCTTAGAGTAGCCAAGGTTCTTAAGGTTGTGTCAGACAGTTGTGGGAATGTAACGGGCAAATCTTTCTTTGACCATAGTTATGATGCTATGTATGAGAGGTGGAAACTATTGAAACAAGCAGCAAAGGATACTAAACGTTTCAGTGTTCCTGATTTCGTCTCTCAACGTTGCAATTTCTTTGGCAGGGTCTTTGAGCCACAACCAGCATTTGCATGGTTTAAGTGTGAAGAAGGGATAGTGGATTGTGAGAAGTTTCTTAGAGAGGAGAAGAAGATTCTAACTAAAAGTGGAAAGTACTTCGGAGATGAGCTAAGTAATGTGAGGATAAGCATGTTGGATAGAGATACTAACTTTAATATTTTCCTTCACAGGATTACATCTTCCTTTAATTCAACTTTGTAA

Protein Analysis

440

Amino Acids

50.01

Weight (kDa)

5.77

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 79 - 434 1.1e-162 Allinase
Aminotran_1_2 PF00155 124 - 423 1.1e-07 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 727
AccI GTMKAC 1 cut(s) 749
AciI CCGC 1 cut(s) 436
AclI AACGTT 2 cut(s) 1057, 1087
AclWI GGATC 2 cut(s) 248, 712
AcoI YGGCCR 3 cut(s) 54, 740, 811
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 4 cut(s) 49, 150, 171, 726
AfaI GTAC 5 cut(s) 553, 620, 703, 881, 1217
AfiI CCNNNNNNNGG 2 cut(s) 52, 727
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 8 cut(s) 88, 215, 644, 801, 887, 909, 1033, 1314
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 6 cut(s) 69, 333, 379, 770, 922, 1231
AluI AGCT 6 cut(s) 69, 333, 379, 770, 922, 1231
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 2 cut(s) 851, 1084
AlwI GGATC 2 cut(s) 248, 712
AoxI GGCC 4 cut(s) 54, 143, 740, 811
ApeKI GCWGC 2 cut(s) 479, 1040
ApoI RAATTY 1 cut(s) 245
AseI ATTAAT 1 cut(s) 522
AspS9I GGNCC 4 cut(s) 43, 144, 515, 632
AsuHPI GGTGA 6 cut(s) 104, 263, 307, 319, 756, 856
AvaII GGWCC 3 cut(s) 43, 515, 632
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BalI TGGCCA 3 cut(s) 56, 742, 813
BbsI GAAGAC 2 cut(s) 177, 225
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 2 cut(s) 466, 1052
BccI CCATC 6 cut(s) 65, 312, 591, 623, 665, 828
BceAI ACGGC 2 cut(s) 177, 876
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 3 cut(s) 163, 816, 1042
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 851, 1084
BfaI CTAG 1 cut(s) 864
BfmI CTRYAG 1 cut(s) 202
BfrI CTTAAG 1 cut(s) 941
BfuI GTATCC 3 cut(s) 163, 816, 1042
BisI GCNGC 2 cut(s) 480, 1041
BlsI GCNGC 2 cut(s) 481, 1042
BmcAI AGTACT 2 cut(s) 703, 1217
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 3 cut(s) 43, 515, 632
BmgT120I GGNCC 4 cut(s) 43, 144, 515, 632
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 200, 598, 994
BoxI GACNNNNGTC 1 cut(s) 513
BpiI GAAGAC 2 cut(s) 177, 225
BpuEI CTTGAG 2 cut(s) 389, 700
Bsa29I ATCGAT 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 322
BsaJI CCNNGG 4 cut(s) 14, 147, 159, 933
BsaWI WCCGGW 1 cut(s) 512
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 727
Bse1I ACTGG 2 cut(s) 460, 814
Bse8I GATNNNNATC 1 cut(s) 322
BseBI CCWGG 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 595
BseDI CCNNGG 4 cut(s) 14, 147, 159, 933
BseGI GGATG 2 cut(s) 323, 839
BseJI GATNNNNATC 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 52, 727
BseNI ACTGG 2 cut(s) 460, 814
BseRI GAGGAG 2 cut(s) 120, 1199
BseXI GCAGC 2 cut(s) 466, 1052
BshFI GGCC 4 cut(s) 56, 145, 742, 813
BshVI ATCGAT 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 3 cut(s) 18, 131, 501
BslI CCNNNNNNNGG 2 cut(s) 52, 727
BsmAI GTCTC 2 cut(s) 851, 1084
BsmBI CGTCTC 2 cut(s) 851, 1084
BsmFI GGGAC 3 cut(s) 18, 131, 501
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 4 cut(s) 56, 145, 742, 813
Bsp1286I GDGCHC 1 cut(s) 809
Bsp143I GATC 3 cut(s) 253, 717, 772
BspACI CCGC 1 cut(s) 436
BspANI GGCC 4 cut(s) 56, 145, 742, 813
BspDI ATCGAT 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 248, 712
BspQI GCTCTTC 1 cut(s) 794
BspTI CTTAAG 1 cut(s) 941
BsrI ACTGG 2 cut(s) 460, 814
BssECI CCNNGG 4 cut(s) 14, 147, 159, 933
BssMI GATC 3 cut(s) 253, 717, 772
BssNAI GTATAC 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 933
Bst1107I GTATAC 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 4 cut(s) 262, 701, 747, 959
Bst6I CTCTTC 1 cut(s) 794
BstAFI CTTAAG 1 cut(s) 941
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 4 cut(s) 329, 923, 1178, 1232
BstDSI CCRYGG 2 cut(s) 147, 159
BstF5I GGATG 2 cut(s) 323, 839
BstKTI GATC 3 cut(s) 256, 720, 775
BstMAI GTCTC 2 cut(s) 851, 1084
BstMBI GATC 3 cut(s) 253, 717, 772
BstMWI GCNNNNNNNGC 2 cut(s) 204, 488
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 1255
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 466, 1052
BstV2I GAAGAC 2 cut(s) 177, 225
BstZ17I GTATAC 1 cut(s) 750
Bsu15I ATCGAT 1 cut(s) 595
BsuI GTATCC 3 cut(s) 163, 816, 1042
BsuRI GGCC 4 cut(s) 56, 145, 742, 813
BsuTUI ATCGAT 1 cut(s) 595
BtgI CCRYGG 2 cut(s) 147, 159
BtsCI GGATG 2 cut(s) 323, 839
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 4 cut(s) 453, 792, 807, 1069
Cac8I GCNNGC 1 cut(s) 381
Cfr13I GGNCC 4 cut(s) 43, 144, 515, 632
ClaI ATCGAT 1 cut(s) 595
Csp6I GTAC 5 cut(s) 552, 619, 702, 880, 1216
CviAII CATG 6 cut(s) 114, 503, 722, 815, 1134, 1252
CviQI GTAC 5 cut(s) 552, 619, 702, 880, 1216
DdeI CTNAG 4 cut(s) 329, 923, 1178, 1232
DpnI GATC 3 cut(s) 255, 719, 774
DpnII GATC 3 cut(s) 253, 717, 772
EaeI YGGCCR 3 cut(s) 54, 740, 811
Eam1104I CTCTTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 794
Eco130I CCWWGG 1 cut(s) 933
Eco47I GGWCC 3 cut(s) 43, 515, 632
Eco57I CTGAAG 4 cut(s) 49, 150, 171, 726
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 933
ErhI CCWWGG 1 cut(s) 933
Esp3I CGTCTC 2 cut(s) 851, 1084
FaeI CATG 6 cut(s) 117, 506, 725, 818, 1137, 1255
FaqI GGGAC 3 cut(s) 18, 131, 501
FatI CATG 6 cut(s) 113, 502, 721, 814, 1133, 1251
FauNDI CATATG 1 cut(s) 140
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 2 cut(s) 480, 1041
FokI GGATG 2 cut(s) 330, 846
Fsp4HI GCNGC 2 cut(s) 480, 1041
FspBI CTAG 1 cut(s) 864
GluI GCNGC 2 cut(s) 480, 1041
HaeIII GGCC 4 cut(s) 56, 145, 742, 813
HapII CCGG 1 cut(s) 513
Hin1II CATG 6 cut(s) 117, 506, 725, 818, 1137, 1255
HinfI GANTC 8 cut(s) 10, 73, 110, 170, 509, 686, 914, 1195
HpaII CCGG 1 cut(s) 513
HphI GGTGA 6 cut(s) 104, 263, 307, 319, 756, 856
Hpy166II GTNNAC 2 cut(s) 697, 750
Hpy188I TCNGA 5 cut(s) 15, 169, 343, 955, 1223
Hpy188III TCNNGA 4 cut(s) 368, 679, 776, 1070
Hpy8I GTNNAC 2 cut(s) 697, 750
HpyAV CCTTC 4 cut(s) 82, 701, 1145, 1295
HpyCH4III ACNGT 4 cut(s) 262, 701, 747, 959
HpyCH4IV ACGT 3 cut(s) 617, 1057, 1087
HpyCH4V TGCA 6 cut(s) 198, 403, 611, 818, 1092, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 488
HpyF3I CTNAG 4 cut(s) 329, 923, 1178, 1232
HpySE526I ACGT 3 cut(s) 617, 1057, 1087
Hsp92II CATG 6 cut(s) 117, 506, 725, 818, 1137, 1255
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 3 cut(s) 253, 717, 772
LguI GCTCTTC 1 cut(s) 794
Lsp1109I GCAGC 2 cut(s) 466, 1052
LweI GCATC 3 cut(s) 200, 598, 994
MaeI CTAG 1 cut(s) 864
MaeII ACGT 3 cut(s) 617, 1057, 1087
MaeIII GTNAC 4 cut(s) 295, 424, 649, 970
MalI GATC 3 cut(s) 255, 719, 774
MboI GATC 3 cut(s) 253, 717, 772
MfeI CAATTG 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 809
MlsI TGGCCA 3 cut(s) 56, 742, 813
MluCI AATT 5 cut(s) 231, 245, 467, 1093, 1309
MluNI TGGCCA 3 cut(s) 56, 742, 813
MlyI GAGTC 2 cut(s) 503, 908
MmeI TCCRAC 2 cut(s) 281, 1236
Mox20I TGGCCA 3 cut(s) 56, 742, 813
MscI TGGCCA 3 cut(s) 56, 742, 813
MseI TTAA 5 cut(s) 522, 942, 1140, 1275, 1308
MslI CAYNNNNRTG 2 cut(s) 999, 1132
Msp20I TGGCCA 3 cut(s) 56, 742, 813
MspA1I CMGCKG 1 cut(s) 770
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 204, 488
NdeI CATATG 1 cut(s) 140
NdeII GATC 3 cut(s) 253, 717, 772
NlaIII CATG 6 cut(s) 117, 506, 725, 818, 1137, 1255
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 1255
PciSI GCTCTTC 1 cut(s) 794
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 6 cut(s) 10, 73, 110, 170, 686, 1195
PflMI CCANNNNNTGG 1 cut(s) 727
PkrI GCNGC 2 cut(s) 481, 1042
PleI GAGTC 2 cut(s) 503, 908
PpsI GAGTC 2 cut(s) 503, 908
PshAI GACNNNNGTC 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 522
Psp1406I AACGTT 2 cut(s) 1057, 1087
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 4 cut(s) 43, 144, 515, 632
PsrI GAACNNNNNNTAC 2 cut(s) 921, 953
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 5 cut(s) 553, 620, 703, 881, 1217
RsaNI GTAC 5 cut(s) 552, 619, 702, 880, 1216
RseI CAYNNNNRTG 2 cut(s) 999, 1132
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 5 cut(s) 522, 942, 1140, 1275, 1308
SatI GCNGC 2 cut(s) 480, 1041
Sau3AI GATC 3 cut(s) 253, 717, 772
Sau96I GGNCC 4 cut(s) 43, 144, 515, 632
ScaI AGTACT 2 cut(s) 703, 1217
SchI GAGTC 2 cut(s) 503, 908
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 3 cut(s) 200, 598, 994
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 3 cut(s) 43, 515, 632
SmiMI CAYNNNNRTG 2 cut(s) 999, 1132
SmlI CTYRAG 3 cut(s) 368, 679, 941
SmoI CTYRAG 3 cut(s) 368, 679, 941
Sse9I AATT 5 cut(s) 231, 245, 467, 1093, 1309
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 1279
SspMI CTAG 1 cut(s) 864
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 933
TaaI ACNGT 4 cut(s) 262, 701, 747, 959
TaiI ACGT 3 cut(s) 620, 1060, 1090
TaqI TCGA 1 cut(s) 595
TasI AATT 5 cut(s) 231, 245, 467, 1093, 1309
TatI WGTACW 4 cut(s) 551, 701, 879, 1215
TfiI GAWTC 6 cut(s) 10, 73, 110, 170, 686, 1195
Tru1I TTAA 5 cut(s) 522, 942, 1140, 1275, 1308
Tru9I TTAA 5 cut(s) 522, 942, 1140, 1275, 1308
TscAI CASTG 4 cut(s) 460, 799, 814, 1069
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 479, 1040
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 102, 360, 430
TspGWI ACGGA 1 cut(s) 841
TspRI CASTG 4 cut(s) 460, 799, 814, 1069
Van91I CCANNNNNTGG 1 cut(s) 727
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 3 cut(s) 43, 515, 632
VspI ATTAAT 1 cut(s) 522
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 1255
XcmI CCANNNNNNNNNTGG 1 cut(s) 1131
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 1 cut(s) 864
ZrmI AGTACT 2 cut(s) 703, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.