FvH4_5g05880

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
3466981 .. 3472437
5457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05880.t1

Sequence Viewer

Length: 1326 bp
ATGACCAAATATGAGAGCATGTTCACAATGAGGAACTTGCTTGTGCTGTCTCTGGCGCTCAATCTGAGCTTGATTACTAGGGTATTCTTCGACGGTGAAAAACATGGGCTCTTCTTCTCTGTGGAGAACCAGAAGCAGAGAGGTCCATCATTTGCTGCAGACAAGGAAGCTCACGCAACCCAGAAGACTCTTCAGTCACTTTCTTCGTCTGGTCAAGAAGGCATGGAAAAAGTCATCAACCTCGACCATGGTGATCCGACTATGTACGAAAAGTACTGGATGATGATGGGTGAGAGAACCACCGTTGTGATACCTGGTTGGTACTCCATGAGCTATTTCTCAGACATTAAAAACCTCTGCTGGTTTTTGGAGCCCGAGTTTGCCAAGCAGGTCATCAGACTACACAAAGCCGTTGGGAATGCCGTCACTGAAGGGCGTCACATTGTGGTTGGGACAGGTTCATCTCAGCTCATTTTAGCTGCGCTTTTCGCTCTTTCTCCAAAAGATGGATCTGAGCCAATGAGTGTCGTATCTACAGCCCCATTCTACTCGTCTTACCCCGTGATGAGCAACTACCTCAAATCGGGCCTGTACAACTGGGCTGGAGATGCCCGAAGCTTCAACAAAGAAGGCCCGTACATCGAGTTTGTCACCTCTCCGAATAACCCTGATGGATTTGTCAGGCACTCTATGGTTAATCGAACTGGAGGTATATTGGTCCATGATTTGGCTTACTACTGGCCACAGTATACCCCCATTCCCTCGCCTGCAGACCATGATCTGTCATTGTTCACTGTCTCAAAAGCCACTGGTCATGCCGGGACGCGCATTGGGTGGGCTCTAGTGAAAGATGCAGAAGTAGCAAAGAAAATGATCAAATTCATAGAGCTCAACACCATTGGCGTGTCCAGGGATTCACAGCTCCGAGCTGCCAAGATCTTGGAAGTCTTGACCAACACCACTGAAAAACATGGCAGCTCAGATTCTGGGGAATCCTTCTTTGAGAAAAGTTACCACCTCATGGCAGAGAGGTGGCGGCTGCTTCGAGCGGCGGTGAACAATGGCAGAATGTTTAGTCTGCCTGACTTTGCACCAGGGTTCTGCCACTTTCTTCAACAGGAGACGCAGCCTCAACCTGCTTTCGCGTGGCTCAAATGTGAGGACGATGCAGTGGAGGATTGTGAAAGCTTCCTCAGAGGGCACAAGATTTTGACCCGAGGAGGAAGACACTTTGGGGTTAGCCCAAAGTATGTCCGCATAAGCATGCTGGATAGGGACATAAACTTCATTTTGTTTCTGAAGCGATTGTCCAAAATCCAGTCATGA

Protein Analysis

442

Amino Acids

49.71

Weight (kDa)

8.47

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 79 - 439 5.5e-148 Allinase
Aminotran_1_2 PF00155 124 - 423 2.7e-13 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
Acc36I ACCTGC 2 cut(s) 379, 1144
AccB7I CCANNNNNTGG 3 cut(s) 506, 727, 1021
AccBSI CCGCTC 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 749
AccII CGCG 2 cut(s) 826, 1145
AciI CCGC 4 cut(s) 1036, 1049, 1052, 1255
AclWI GGATC 2 cut(s) 248, 517
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 3 cut(s) 176, 450, 1319
AcyI GRCGYC 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 5 cut(s) 266, 275, 323, 593, 638
AfiI CCNNNNNNNGG 4 cut(s) 506, 583, 727, 1021
AgsI TTSAA 2 cut(s) 622, 1115
AjnI CCWGG 3 cut(s) 313, 908, 1093
AleI CACNNNNGTG 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 891
Alw26I GTCTC 3 cut(s) 54, 802, 1115
AlwI GGATC 2 cut(s) 248, 517
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 2 cut(s) 374, 1215
AoxI GGCC 3 cut(s) 586, 631, 740
ApeKI GCWGC 6 cut(s) 155, 479, 929, 975, 1039, 1126
ApoI RAATTY 1 cut(s) 878
AspLEI GCGC 3 cut(s) 58, 484, 828
AspS9I GGNCC 4 cut(s) 143, 586, 632, 718
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 5 cut(s) 107, 263, 302, 643, 1066
AvaI CYCGRG 2 cut(s) 374, 1215
AvaII GGWCC 2 cut(s) 143, 718
BaeGI GKGCMC 1 cut(s) 1203
BalI TGGCCA 1 cut(s) 742
BanII GRGCYC 4 cut(s) 111, 375, 841, 891
BbsI GAAGAC 2 cut(s) 191, 1231
Bbv12I GWGCWC 1 cut(s) 891
BbvI GCAGC 6 cut(s) 142, 466, 916, 987, 1026, 1138
BccI CCATC 4 cut(s) 154, 280, 500, 665
BceAI ACGGC 2 cut(s) 395, 407
BciT130I CCWGG 3 cut(s) 315, 910, 1095
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 3 cut(s) 54, 802, 1115
BfaI CTAG 2 cut(s) 78, 842
BfmI CTRYAG 3 cut(s) 156, 534, 768
BfoI RGCGCY 1 cut(s) 59
BfuAI ACCTGC 2 cut(s) 379, 1144
BglII AGATCT 1 cut(s) 936
BisI GCNGC 8 cut(s) 156, 480, 930, 976, 1037, 1040, 1050, 1127
BlsI GCNGC 8 cut(s) 157, 481, 931, 977, 1038, 1041, 1051, 1128
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 4 cut(s) 315, 820, 910, 1095
Bme18I GGWCC 2 cut(s) 143, 718
BmeT110I CYCGRG 2 cut(s) 374, 1215
BmgT120I GGNCC 4 cut(s) 143, 586, 632, 718
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 4 cut(s) 315, 820, 910, 1095
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 3 cut(s) 598, 841, 1156
BmuI ACTGGG 1 cut(s) 607
BpiI GAAGAC 2 cut(s) 191, 1231
BpmI CTGGAG 2 cut(s) 624, 726
BpuMI CCSGG 1 cut(s) 820
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 4 cut(s) 247, 909, 1094, 1216
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 506, 583, 727, 1021
Bse1I ACTGG 6 cut(s) 281, 602, 709, 743, 814, 1318
BseBI CCWGG 3 cut(s) 315, 910, 1095
BseDI CCNNGG 4 cut(s) 247, 909, 1094, 1216
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 506, 583, 727, 1021
BseMII CTCAG 6 cut(s) 56, 354, 479, 504, 993, 1207
BseNI ACTGG 6 cut(s) 281, 602, 709, 743, 814, 1318
BseRI GAGGAG 1 cut(s) 1233
BseSI GKGCMC 1 cut(s) 1203
BseXI GCAGC 6 cut(s) 142, 466, 916, 987, 1026, 1138
Bsh1236I CGCG 2 cut(s) 826, 1145
BshFI GGCC 3 cut(s) 588, 633, 742
BsiHKAI GWGCWC 1 cut(s) 891
BsiHKCI CYCGRG 2 cut(s) 374, 1215
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 3 cut(s) 466, 835, 1289
BslI CCNNNNNNNGG 4 cut(s) 506, 583, 727, 1021
BsmAI GTCTC 3 cut(s) 54, 802, 1115
BsmBI CGTCTC 1 cut(s) 1115
BsmFI GGGAC 3 cut(s) 466, 835, 1289
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 588, 633, 742
BsoBI CYCGRG 2 cut(s) 374, 1215
Bsp1286I GDGCHC 5 cut(s) 111, 375, 841, 891, 1203
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 5 cut(s) 253, 509, 778, 873, 936
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 4 cut(s) 1036, 1049, 1052, 1255
BspANI GGCC 3 cut(s) 588, 633, 742
BspCNI CTCAG 6 cut(s) 57, 353, 478, 505, 992, 1206
BspFNI CGCG 2 cut(s) 826, 1145
BspHI TCATGA 1 cut(s) 1322
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 2 cut(s) 160, 772
BspMI ACCTGC 2 cut(s) 379, 1144
BspPI GGATC 2 cut(s) 248, 517
BspQI GCTCTTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 1049
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 6 cut(s) 281, 602, 709, 743, 814, 1318
BssECI CCNNGG 4 cut(s) 247, 909, 1094, 1216
BssMI GATC 5 cut(s) 253, 509, 778, 873, 936
BssNAI GTATAC 1 cut(s) 750
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 750
Bst2UI CCWGG 3 cut(s) 315, 910, 1095
Bst4CI ACNGT 4 cut(s) 95, 304, 747, 796
Bst6I CTCTTC 2 cut(s) 116, 195
BstACI GRCGYC 1 cut(s) 436
BstAUI TGTACA 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 768, 1265
BstDEI CTNAG 6 cut(s) 65, 340, 465, 513, 979, 1193
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 826, 1145
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 3 cut(s) 58, 484, 828
BstKTI GATC 5 cut(s) 256, 512, 781, 876, 939
BstMAI GTCTC 3 cut(s) 54, 802, 1115
BstMBI GATC 5 cut(s) 253, 509, 778, 873, 936
BstMWI GCNNNNNNNGC 3 cut(s) 488, 608, 860
BstNI CCWGG 3 cut(s) 315, 910, 1095
BstNSI RCATGY 2 cut(s) 22, 1267
BstSCI CCNGG 4 cut(s) 313, 818, 908, 1093
BstSFI CTRYAG 3 cut(s) 156, 534, 768
BstSLI GKGCMC 1 cut(s) 1203
BstUI CGCG 2 cut(s) 826, 1145
BstV1I GCAGC 6 cut(s) 142, 466, 916, 987, 1026, 1138
BstV2I GAAGAC 2 cut(s) 191, 1231
BstX2I RGATCY 2 cut(s) 509, 936
BstXI CCANNNNNNTGG 1 cut(s) 940
BstYI RGATCY 2 cut(s) 509, 936
BstZ17I GTATAC 1 cut(s) 750
BsuRI GGCC 3 cut(s) 588, 633, 742
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 1176
BtsIMutI CAGTG 5 cut(s) 426, 792, 807, 960, 1176
BveI ACCTGC 2 cut(s) 379, 1144
Cac8I GCNNGC 2 cut(s) 768, 1265
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 1 cut(s) 1322
CfoI GCGC 3 cut(s) 58, 484, 828
Cfr13I GGNCC 4 cut(s) 143, 586, 632, 718
CseI GACGC 3 cut(s) 425, 832, 1132
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 5 cut(s) 265, 274, 322, 592, 637
CviQI GTAC 5 cut(s) 265, 274, 322, 592, 637
DdeI CTNAG 6 cut(s) 65, 340, 465, 513, 979, 1193
DpnI GATC 5 cut(s) 255, 511, 780, 875, 938
DpnII GATC 5 cut(s) 253, 509, 778, 873, 936
DraIII CACNNNGTG 1 cut(s) 445
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 2 cut(s) 116, 195
EarI CTCTTC 2 cut(s) 116, 195
Ecl136II GAGCTC 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 4 cut(s) 111, 375, 841, 891
Eco47I GGWCC 2 cut(s) 143, 718
Eco53kI GAGCTC 1 cut(s) 889
Eco57I CTGAAG 3 cut(s) 176, 450, 1319
Eco88I CYCGRG 2 cut(s) 374, 1215
EcoICRI GAGCTC 1 cut(s) 889
EcoRII CCWGG 3 cut(s) 313, 908, 1093
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 4 cut(s) 111, 375, 841, 891
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 1115
FaqI GGGAC 3 cut(s) 466, 835, 1289
FbaI TGATCA 1 cut(s) 873
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 8 cut(s) 156, 480, 930, 976, 1037, 1040, 1050, 1127
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 4 cut(s) 111, 375, 841, 891
Fsp4HI GCNGC 8 cut(s) 156, 480, 930, 976, 1037, 1040, 1050, 1127
FspBI CTAG 2 cut(s) 78, 842
GlaI GCGC 3 cut(s) 57, 483, 827
GluI GCNGC 8 cut(s) 156, 480, 930, 976, 1037, 1040, 1050, 1127
GsuI CTGGAG 2 cut(s) 624, 726
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 3 cut(s) 588, 633, 742
HapII CCGG 1 cut(s) 819
HgaI GACGC 3 cut(s) 425, 832, 1132
HhaI GCGC 3 cut(s) 58, 484, 828
Hin1I GRCGYC 1 cut(s) 436
Hin6I GCGC 3 cut(s) 56, 482, 826
HinP1I GCGC 3 cut(s) 56, 482, 826
HindIII AAGCTT 2 cut(s) 616, 1186
HinfI GANTC 4 cut(s) 187, 914, 983, 992
HpaII CCGG 1 cut(s) 819
HphI GGTGA 5 cut(s) 107, 263, 302, 643, 1066
Hpy166II GTNNAC 4 cut(s) 24, 750, 792, 1057
Hpy188III TCNNGA 3 cut(s) 215, 949, 1323
Hpy8I GTNNAC 4 cut(s) 24, 750, 792, 1057
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 212, 425, 623, 1006
HpyCH4III ACNGT 4 cut(s) 95, 304, 747, 796
HpyCH4V TGCA 5 cut(s) 158, 770, 854, 1091, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 608, 860
HpyF3I CTNAG 6 cut(s) 65, 340, 465, 513, 979, 1193
Hsp92I GRCGYC 1 cut(s) 436
HspAI GCGC 3 cut(s) 56, 482, 826
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 5 cut(s) 253, 509, 778, 873, 936
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 370, 927
Lsp1109I GCAGC 6 cut(s) 142, 466, 916, 987, 1026, 1138
LweI GCATC 3 cut(s) 598, 841, 1156
MabI ACCWGGT 1 cut(s) 313
MaeI CTAG 2 cut(s) 78, 842
MaeIII GTNAC 5 cut(s) 195, 424, 437, 649, 1010
MalI GATC 5 cut(s) 255, 511, 780, 875, 938
MbiI CCGCTC 1 cut(s) 1049
MboI GATC 5 cut(s) 253, 509, 778, 873, 936
MboII GAAGA 8 cut(s) 79, 103, 106, 182, 195, 196, 1103, 1236
MflI RGATCY 2 cut(s) 509, 936
MhlI GDGCHC 5 cut(s) 111, 375, 841, 891, 1203
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 1 cut(s) 878
MluNI TGGCCA 1 cut(s) 742
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 281
Mox20I TGGCCA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 742
MseI TTAA 2 cut(s) 348, 696
MslI CAYNNNNRTG 3 cut(s) 305, 902, 1262
Msp20I TGGCCA 1 cut(s) 742
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 4 cut(s) 315, 820, 910, 1095
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 315, 910, 1095
MvnI CGCG 2 cut(s) 826, 1145
MwoI GCNNNNNNNGC 3 cut(s) 488, 608, 860
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 247
NdeII GATC 5 cut(s) 253, 509, 778, 873, 936
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 4 cut(s) 195, 424, 437, 649
NspI RCATGY 2 cut(s) 22, 1267
OliI CACNNNNGTG 1 cut(s) 305
PaeI GCATGC 1 cut(s) 1267
PagI TCATGA 1 cut(s) 1322
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 3 cut(s) 914, 983, 992
PflMI CCANNNNNTGG 3 cut(s) 506, 727, 1021
PkrI GCNGC 8 cut(s) 157, 481, 931, 977, 1038, 1041, 1051, 1128
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 891
Psp6I CCWGG 3 cut(s) 313, 908, 1093
PspGI CCWGG 3 cut(s) 313, 908, 1093
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 4 cut(s) 143, 586, 632, 718
PstI CTGCAG 2 cut(s) 160, 772
PstNI CAGNNNCTG 1 cut(s) 986
PsuI RGATCY 2 cut(s) 509, 936
RsaI GTAC 5 cut(s) 266, 275, 323, 593, 638
RsaNI GTAC 5 cut(s) 265, 274, 322, 592, 637
RseI CAYNNNNRTG 3 cut(s) 305, 902, 1262
SacI GAGCTC 1 cut(s) 891
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 348, 696
SatI GCNGC 8 cut(s) 156, 480, 930, 976, 1037, 1040, 1050, 1127
Sau3AI GATC 5 cut(s) 253, 509, 778, 873, 936
Sau96I GGNCC 4 cut(s) 143, 586, 632, 718
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 4 cut(s) 315, 820, 910, 1095
SduI GDGCHC 5 cut(s) 111, 375, 841, 891, 1203
SexAI ACCWGGT 1 cut(s) 313
SfaNI GCATC 3 cut(s) 598, 841, 1156
SfcI CTRYAG 3 cut(s) 156, 534, 768
SinI GGWCC 2 cut(s) 143, 718
SmiMI CAYNNNNRTG 3 cut(s) 305, 902, 1262
SphI GCATGC 1 cut(s) 1267
Sse9I AATT 1 cut(s) 878
SsiI CCGC 4 cut(s) 1036, 1049, 1052, 1255
SspMI CTAG 2 cut(s) 78, 842
SstI GAGCTC 1 cut(s) 891
StyD4I CCNGG 4 cut(s) 313, 818, 908, 1093
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 4 cut(s) 95, 304, 747, 796
TaqI TCGA 5 cut(s) 90, 243, 642, 700, 1045
TasI AATT 1 cut(s) 878
TatI WGTACW 2 cut(s) 273, 591
TauI GCSGC 2 cut(s) 1039, 1052
TfiI GAWTC 3 cut(s) 914, 983, 992
Tru1I TTAA 2 cut(s) 348, 696
Tru9I TTAA 2 cut(s) 348, 696
TscAI CASTG 5 cut(s) 433, 799, 814, 967, 1176
TseFI GTSAC 4 cut(s) 195, 424, 437, 649
TseI GCWGC 6 cut(s) 155, 479, 929, 975, 1039, 1126
Tsp45I GTSAC 4 cut(s) 195, 424, 437, 649
TspDTI ATGAA 3 cut(s) 450, 871, 1276
TspRI CASTG 5 cut(s) 433, 799, 814, 967, 1176
Van91I CCANNNNNTGG 3 cut(s) 506, 727, 1021
VpaK11BI GGWCC 2 cut(s) 143, 718
XapI RAATTY 1 cut(s) 878
XceI RCATGY 2 cut(s) 22, 1267
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 2 cut(s) 78, 842
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.