Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002684

Physical Location & Seq

Genomic Coordinates Reverse (-)

3058010 .. 3060005

Gene Structure 1996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCAGCTTTCTCAATCTTTTCACTATAAAAAATTTGCTTGTTCTTTCCATAGCGCTCAATCTGAGCTTTCTTTTCAATGTTAATAAACATGGCTTCTGGTTCAGTGTGGAGAGCCAGGAGAATAGATGTCCATCGATGGTTGAAAACCATGAAGCTCAAGCAACCATGAGGACCCTTCTGTCCGTTTCCTCTACGTCCGGTCAAGAAGACCTGGACAGAGTCATCAACCTCAACCATGGTGACCCGACTATGTACGAAAAGTACTGGTTGATGATGAGTGAGAGAACCACAGTGGTGATTCCAGGGTGGCTCTCCATGAGCTACTTCTCAGATGCTAAAAGCCTCTGCTGGTTTTTGGAGCCGGAGCTTGCCAAGCAGATTATCAGACTCCACAAAGCCGTGGGCAATGCCGTCACCAAAGGGCGTCACATTGTGGTTGGAACAGGTTCGTCTCAGCTCATTATGGCTGCCCTTTTCGCTCTTTCTCCCAAAGATGGATCAGAGCCCATGAGCGTGGTAGCTACTGCACCTTACTACTCGTCTTACCCAGTGATGAGCACCTACCTCAAGTCGGGGCTGGACAACTGGGCTGGAGATACGAAAAGCTTCAACAAAGAAGGCCCCTACATTGAGTTCATCACCTCTCCGAACAACCCCGATGATTCGTCAGGTCCTCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006952 GO:0007154 GO:0007275 GO:0008150 GO:0008483 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009888 GO:0009908 GO:0009958 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0012505 GO:0016020 GO:0016740 GO:0016769 GO:0019827 GO:0022414 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0050362 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070529 GO:0071496 GO:0080097 GO:0090567 GO:0090696 GO:0098542 GO:0098727 GO:0098827 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

229

Amino Acids

25.38

Weight (kDa)

5.95

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alliinase_C	PF04864	76 - 222	4.3e-56	Allinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24670 AT4G24670
fragaria_vesca	FvH4_5g05880 FvH4_5g05880 FvH4_5g05880 FvH4_5g05900 FvH4_7g02760 FvH4_7g02760
malus_domestica	MD06G1169600.v1.1 MD14G1175000.v1.1
prunus_persica	Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1
pyrus_communis	pycom06g15090
rosa_chinensis	RchiOBHm_Chr7g0192931 RchiOBHm_Chr7g0192941
rosa_laevigata	RLG00000004311 RLG00000004312
rosa_multiflora	Rmu_co8488627.1_g000001 Rmu_sc0002040.1_g000057 Rmu_sc0002040.1_g000058
rosa_roxburghii	Rroxscaffold_3G00262530 Rroxscaffold_3G00262540
rosa_rugosa	Rorug07G0005900 Rorug07G0006000 Rorug07G0006100 Rorug07G0006200 Rorug07G0006300 Rorug07G0006400
rosa_samantha	Rh7AG131400 Rh7AG131500 Rh7BG132200 Rh7BG132300 Rh7CG135500 Rh7CG135600 Rh7DG133400 Rh7DG133500
rosa_wichuraiana	Rw7G011210 Rw7G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	427
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	257, 266
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	497, 574
AgsI	TTSAA	3 cut(s)	79, 146, 613
AjnI	CCWGG	3 cut(s)	117, 213, 304
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	8 cut(s)	9, 69, 158, 324, 370, 460, 524, 609
AluI	AGCT	8 cut(s)	9, 69, 158, 324, 370, 460, 524, 609
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	508
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	2 cut(s)	3, 622
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	34
Asp700I	GAANNNNTTC	2 cut(s)	448, 608
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	174, 623, 674
AsuHPI	GGTGA	4 cut(s)	254, 310, 409, 634
AvaII	GGWCC	2 cut(s)	174, 674
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	3 cut(s)	133, 142, 491
BceAI	ACGGC	2 cut(s)	386, 398
BciT130I	CCWGG	3 cut(s)	119, 215, 306
BcoDI	GTCTC	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	119, 215, 306
Bme18I	GGWCC	2 cut(s)	174, 674
BmgT120I	GGNCC	3 cut(s)	174, 623, 674
BmiI	GGNNCC	3 cut(s)	176, 363, 625
BmrFI	CCNGG	3 cut(s)	119, 215, 306
BmrI	ACTGGG	2 cut(s)	545, 598
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	2 cut(s)	545, 598
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	144, 554
Bsa29I	ATCGAT	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	427
BsaJI	CCNNGG	4 cut(s)	238, 305, 402, 680
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 574
Bse1I	ACTGG	3 cut(s)	272, 551, 593
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	3 cut(s)	119, 215, 306
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	4 cut(s)	238, 305, 402, 680
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	497, 574
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	56, 345, 470
BseNI	ACTGG	3 cut(s)	272, 551, 593
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	5, 624
BshVI	ATCGAT	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	201, 365
BslI	CCNNNNNNNGG	2 cut(s)	497, 574
BsmAI	GTCTC	1 cut(s)	459
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	5, 624
Bsp1286I	GDGCHC	2 cut(s)	510, 563
Bsp143I	GATC	1 cut(s)	500
Bsp19I	CCATGG	1 cut(s)	238
BspANI	GGCC	2 cut(s)	5, 624
BspCNI	CTCAG	3 cut(s)	57, 344, 469
BspDI	ATCGAT	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	176, 363, 625
BspPI	GGATC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	272, 551, 593
BssECI	CCNNGG	4 cut(s)	238, 305, 402, 680
BssMI	GATC	1 cut(s)	500
BssNI	GRCGYC	1 cut(s)	427
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	3 cut(s)	119, 215, 306
Bst4CI	ACNGT	2 cut(s)	295, 684
BstACI	GRCGYC	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	7, 372
BstDEI	CTNAG	3 cut(s)	65, 331, 456
BstDSI	CCRYGG	3 cut(s)	238, 402, 680
BstEII	GGTNACC	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	503
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 479
BstNI	CCWGG	3 cut(s)	119, 215, 306
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	117, 213, 304
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	5, 624
BsuTUI	ATCGAT	1 cut(s)	137
BtgI	CCRYGG	3 cut(s)	238, 402, 680
BtsIMutI	CAGTG	3 cut(s)	112, 300, 558
Cac8I	GCNNGC	2 cut(s)	7, 372
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	174, 623, 674
ClaI	ATCGAT	1 cut(s)	137
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	256, 265
CviAII	CATG	6 cut(s)	92, 152, 169, 239, 319, 511
CviQI	GTAC	2 cut(s)	256, 265
DdeI	CTNAG	3 cut(s)	65, 331, 456
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
DraIII	CACNNNGTG	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	174, 674
Eco47III	AGCGCT	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	242
EcoO109I	RGGNCCY	3 cut(s)	174, 623, 674
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	117, 213, 304
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	6 cut(s)	95, 155, 172, 242, 322, 514
FatI	CATG	6 cut(s)	91, 151, 168, 238, 318, 510
Fnu4HI	GCNGC	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	471
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	5, 624
HapII	CCGG	2 cut(s)	201, 365
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	427
Hin1II	CATG	6 cut(s)	95, 155, 172, 242, 322, 514
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	4 cut(s)	222, 301, 390, 665
HpaII	CCGG	2 cut(s)	201, 365
HphI	GGTGA	4 cut(s)	254, 310, 409, 634
Hpy188I	TCNGA	5 cut(s)	66, 334, 389, 505, 651
Hpy188III	TCNNGA	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	188, 614
HpyCH4III	ACNGT	2 cut(s)	295, 684
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 479
HpyF3I	CTNAG	3 cut(s)	65, 331, 456
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	427
Hsp92II	CATG	6 cut(s)	95, 155, 172, 242, 322, 514
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	361, 367
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	242, 415, 428
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	510, 563
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	231, 384
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	7 cut(s)	165, 202, 242, 356, 578, 655, 687
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	448, 608
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	296, 515
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	201, 365
MspR9I	CCNGG	3 cut(s)	119, 215, 306
MvaI	CCWGG	3 cut(s)	119, 215, 306
MwoI	GCNNNNNNNGC	2 cut(s)	376, 479
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	500
NlaIII	CATG	6 cut(s)	95, 155, 172, 242, 322, 514
NlaIV	GGNNCC	3 cut(s)	176, 363, 625
NmuCI	GTSAC	3 cut(s)	242, 415, 428
OliI	CACNNNNGTG	1 cut(s)	296
PdmI	GAANNNNTTC	2 cut(s)	448, 608
PfeI	GAWTC	2 cut(s)	301, 665
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	2 cut(s)	230, 384
PpsI	GAGTC	2 cut(s)	230, 384
PpuMI	RGGWCCY	2 cut(s)	174, 674
Psp5II	RGGWCCY	2 cut(s)	174, 674
Psp6I	CCWGG	3 cut(s)	117, 213, 304
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	3 cut(s)	117, 213, 304
PspN4I	GGNNCC	3 cut(s)	176, 363, 625
PspPI	GGNCC	3 cut(s)	174, 623, 674
PspPPI	RGGWCCY	2 cut(s)	174, 674
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	257, 266
RsaNI	GTAC	2 cut(s)	256, 265
RseI	CAYNNNNRTG	2 cut(s)	296, 515
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	3 cut(s)	174, 623, 674
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	2 cut(s)	231, 384
ScrFI	CCNGG	3 cut(s)	119, 215, 306
SduI	GDGCHC	2 cut(s)	510, 563
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	2 cut(s)	174, 674
SmiMI	CAYNNNNRTG	2 cut(s)	296, 515
SmlI	CTYRAG	2 cut(s)	159, 569
SmoI	CTYRAG	2 cut(s)	159, 569
Sse9I	AATT	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	117, 213, 304
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	295, 684
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	301, 665
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	3 cut(s)	112, 300, 558
TseFI	GTSAC	3 cut(s)	242, 415, 428
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	242, 415, 428
TspDTI	ATGAA	2 cut(s)	168, 628
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	112, 300, 558
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	174, 674
XapI	RAATTY	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	448, 608
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.