MD06G1169600.v1.1

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
31019635 .. 31027676
8042 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1169600.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGGCCAACTTTCTGGGGATTTTCACAGTGAGGAACTTGCTTGGGCTGTCACTGGCTCTTAATCTGAGCTTGGTTCTGAGGGTGGTTTACGAGAGCGGGAAGGATGGAGGCCCACATGGGTTCTCTGTGGAGGAGCAGAGAGGGCCGTCAATGGCGGACATGGGTTTTGGGAAGGAAGCTCAGGCGACGCAGAGGACGCGTCTGTCCGCTTCTTCTTCTGGCCAAGATGTCATGGACAAAGTTATCAACCTCGACCACGGTGACCCTACTATGTATGAAAATTACTGGCAGCGGATGGGTGAAAGAACCACAGTTGTGATCTCTGGGTGGCAGTCTATGAGCTATTTCTCAGATGTCAAAAACCCTTGCTGGTTTTTGGAGCCGGAGTTTGCCAAACAAGTTGTGAGACTACACAATGTGGTCGGCAACGCCGTCACCAACGGCCGCCAAATCGTGGTCGGGACGGGTTCATCCCAGCTGTTTTTAGCCGCCCTCTATGCCCTAGCTCCCAAAGATGGATCTGAGCCAATGAGTGTGGTGTCGGCCGCCCCATACTACTCGTCATACCCCTCTATGACGGACTGCTTGAAGTCCGGCTTGTACAAGTGGGCCGGTGATGCCCGACGCTTCAGCAAAGAGGGACCTTATATAGAGCTAGTGACCTCCCCAAACAACCCTGATGGATTCGTCAGGCATTCCATGGTCAATCGAACGGGGGGTATATTGGTTCACGACTTGGCCTACTACTGGCCACAGTATACCCCGATTTCTTCTCCTGCGGACCATGATCTGACACTGTTCACCGTCTCCAAAGCCACTGGCCATGCCGGGACTCGCATTGGGTGGGCTCTTGTTAAAGATCCTGAAGTTGCAAAGAAGATGATCAAATTCATAGAGCTCAACACCATTGGCGTGTCCAGGGATTCACAGCTCCGAGCTGCCAAGATTTTAGAGGTGATGACCAACACCTCTGAAAACGTCGGCCGCATTGGTTCCTATGAATCCTTTTTCTGGATTAGCTACCACCTCATGGCAGAGAGGTGGCAGCTACTTAGGGCGGCGGTGAACAGGAGCAGAGTGTTTAGTCTGCCCGACTTTACACCAGGGTTCTGCCACTTCCTCAACCAGGACTCCCAGCCTCAACCTGCTTTCGCGTGGCTAAAATGTGAGGACGATCGCGTGGAAGATTGCGAAAGCTTCCTAAGAGGCTACAAGATGTTAACAAGAGGAGGAAGGCACTTTGGAGTTGGTCCAAAGTACGTCCGCATAAGCATGGTGGATCGGGACAACAATTTCAACTTATTTGTGAAGCGACTGTCTGTGATTCAGTCATGA

Protein Analysis

445

Amino Acids

49.7

Weight (kDa)

8.64

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 82 - 442 6.4e-149 Allinase
Aminotran_1_2 PF00155 127 - 431 2.1e-10 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 1153
AccB7I CCANNNNNTGG 2 cut(s) 454, 1030
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 758
AccII CGCG 3 cut(s) 199, 1154, 1179
AclWI GGATC 3 cut(s) 526, 854, 1287
AcoI YGGCCR 7 cut(s) 3, 220, 442, 543, 749, 820, 982
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 2 cut(s) 613, 885
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 602, 1259
AfiI CCNNNNNNNGG 6 cut(s) 454, 515, 747, 1011, 1030, 1126
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 589, 1297
AjnI CCWGG 3 cut(s) 917, 1102, 1125
AleI CACNNNNGTG 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 2 cut(s) 400, 811
AlwI GGATC 3 cut(s) 526, 854, 1287
ApeKI GCWGC 3 cut(s) 289, 938, 1045
ApoI RAATTY 1 cut(s) 887
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspS9I GGNCC 6 cut(s) 110, 143, 609, 641, 781, 1250
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 7 cut(s) 272, 311, 427, 626, 793, 967, 1075
AvaII GGWCC 3 cut(s) 641, 781, 1250
BalI TGGCCA 4 cut(s) 5, 222, 751, 822
BanII GRGCYC 2 cut(s) 850, 900
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 3 cut(s) 301, 925, 1057
BccI CCATC 4 cut(s) 98, 289, 509, 674
BceAI ACGGC 3 cut(s) 130, 416, 457
BciT130I CCWGG 3 cut(s) 919, 1104, 1127
BclI TGATCA 1 cut(s) 882
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 400, 811
BfaI CTAG 2 cut(s) 503, 656
BfuAI ACCTGC 1 cut(s) 1153
BisI GCNGC 8 cut(s) 290, 445, 489, 546, 939, 985, 1046, 1059
BlsI GCNGC 8 cut(s) 291, 446, 490, 547, 940, 986, 1047, 1060
Bme1390I CCNGG 4 cut(s) 829, 919, 1104, 1127
Bme18I GGWCC 3 cut(s) 641, 781, 1250
BmgT120I GGNCC 6 cut(s) 110, 143, 609, 641, 781, 1250
BmiI GGNNCC 3 cut(s) 381, 642, 994
BmrFI CCNGG 4 cut(s) 829, 919, 1104, 1127
BmsI GCATC 1 cut(s) 607
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 829
BsaJI CCNNGG 4 cut(s) 256, 699, 918, 1103
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 1115, 1145
Bsc4I CCNNNNNNNGG 6 cut(s) 454, 515, 747, 1011, 1030, 1126
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 4 cut(s) 57, 290, 752, 823
BseBI CCWGG 3 cut(s) 919, 1104, 1127
BseDI CCNNGG 4 cut(s) 256, 699, 918, 1103
BseGI GGATG 3 cut(s) 109, 300, 470
BseLI CCNNNNNNNGG 6 cut(s) 454, 515, 747, 1011, 1030, 1126
BseMII CTCAG 5 cut(s) 56, 68, 194, 363, 513
BseNI ACTGG 4 cut(s) 57, 290, 752, 823
BseRI GAGGAG 2 cut(s) 146, 1242
BseX3I CGGCCG 3 cut(s) 442, 543, 982
BseXI GCAGC 3 cut(s) 301, 925, 1057
BseYI CCCAGC 2 cut(s) 474, 1134
Bsh1236I CGCG 3 cut(s) 199, 1154, 1179
Bsh1285I CGRYCG 4 cut(s) 445, 546, 985, 1177
BsiEI CGRYCG 4 cut(s) 445, 546, 985, 1177
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 4 cut(s) 383, 594, 612, 828
BslFI GGGAC 4 cut(s) 475, 654, 844, 1298
BslI CCNNNNNNNGG 6 cut(s) 454, 515, 747, 1011, 1030, 1126
BsmAI GTCTC 2 cut(s) 400, 811
BsmBI CGTCTC 1 cut(s) 811
BsmFI GGGAC 4 cut(s) 475, 654, 844, 1298
BsmI GAATGC 1 cut(s) 694
Bsp1286I GDGCHC 2 cut(s) 850, 900
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
Bsp19I CCATGG 1 cut(s) 699
BspCNI CTCAG 5 cut(s) 57, 69, 193, 362, 514
BspFNI CGCG 3 cut(s) 199, 1154, 1179
BspHI TCATGA 1 cut(s) 1331
BspLI GGNNCC 3 cut(s) 381, 642, 994
BspMI ACCTGC 1 cut(s) 1153
BspPI GGATC 3 cut(s) 526, 854, 1287
BsrBI CCGCTC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 611
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 4 cut(s) 57, 290, 752, 823
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 4 cut(s) 256, 699, 918, 1103
BssMI GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
BssNAI GTATAC 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 699
Bst1107I GTATAC 1 cut(s) 759
Bst2UI CCWGG 3 cut(s) 919, 1104, 1127
Bst4CI ACNGT 7 cut(s) 28, 260, 313, 756, 798, 805, 1317
BstAUI TGTACA 1 cut(s) 600
BstDEI CTNAG 7 cut(s) 65, 77, 180, 349, 522, 1052, 1202
BstDSI CCRYGG 2 cut(s) 256, 699
BstEII GGTNACC 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 3 cut(s) 109, 300, 470
BstFNI CGCG 3 cut(s) 199, 1154, 1179
BstKTI GATC 7 cut(s) 321, 521, 790, 862, 885, 1177, 1282
BstMAI GTCTC 2 cut(s) 400, 811
BstMBI GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
BstMCI CGRYCG 4 cut(s) 445, 546, 985, 1177
BstMWI GCNNNNNNNGC 4 cut(s) 142, 196, 497, 617
BstNI CCWGG 3 cut(s) 919, 1104, 1127
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 827, 917, 1102, 1125
BstUI CGCG 3 cut(s) 199, 1154, 1179
BstV1I GCAGC 3 cut(s) 301, 925, 1057
BstX2I RGATCY 2 cut(s) 518, 859
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 2 cut(s) 518, 859
BstZ17I GTATAC 1 cut(s) 759
BstZI CGGCCG 3 cut(s) 442, 543, 982
BtgI CCRYGG 2 cut(s) 256, 699
BtsCI GGATG 3 cut(s) 109, 300, 470
BtsIMutI CAGTG 4 cut(s) 33, 50, 794, 816
BveI ACCTGC 1 cut(s) 1153
CciI TCATGA 1 cut(s) 1331
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 6 cut(s) 110, 143, 609, 641, 781, 1250
CseI GACGC 4 cut(s) 188, 196, 205, 633
Csp6I GTAC 2 cut(s) 601, 1258
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviAII CATG 9 cut(s) 116, 160, 232, 700, 785, 824, 1030, 1273, 1332
CviQI GTAC 2 cut(s) 601, 1258
DdeI CTNAG 7 cut(s) 65, 77, 180, 349, 522, 1052, 1202
DpnI GATC 7 cut(s) 320, 520, 789, 861, 884, 1176, 1281
DpnII GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
DraIII CACNNNGTG 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 7 cut(s) 3, 220, 442, 543, 749, 820, 982
EagI CGGCCG 3 cut(s) 442, 543, 982
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 898
EclXI CGGCCG 3 cut(s) 442, 543, 982
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 2 cut(s) 850, 900
Eco47I GGWCC 3 cut(s) 641, 781, 1250
Eco52I CGGCCG 3 cut(s) 442, 543, 982
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 2 cut(s) 613, 885
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 898
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 917, 1102, 1125
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 2 cut(s) 850, 900
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 811
FaeI CATG 9 cut(s) 119, 163, 235, 703, 788, 827, 1033, 1276, 1335
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FaqI GGGAC 4 cut(s) 475, 654, 844, 1298
FatI CATG 9 cut(s) 115, 159, 231, 699, 784, 823, 1029, 1272, 1331
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 882
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 8 cut(s) 290, 445, 489, 546, 939, 985, 1046, 1059
FokI GGATG 3 cut(s) 116, 307, 457
FriOI GRGCYC 2 cut(s) 850, 900
Fsp4HI GCNGC 8 cut(s) 290, 445, 489, 546, 939, 985, 1046, 1059
FspBI CTAG 2 cut(s) 503, 656
GluI GCNGC 8 cut(s) 290, 445, 489, 546, 939, 985, 1046, 1059
GsaI CCCAGC 2 cut(s) 478, 1138
HapII CCGG 4 cut(s) 383, 594, 612, 828
HgaI GACGC 4 cut(s) 188, 196, 205, 633
Hin1II CATG 9 cut(s) 119, 163, 235, 703, 788, 827, 1033, 1276, 1335
HincII GTYRAC 1 cut(s) 1221
HindII GTYRAC 1 cut(s) 1221
HindIII AAGCTT 1 cut(s) 1195
HinfI GANTC 6 cut(s) 684, 832, 923, 1001, 1130, 1324
HpaI GTTAAC 1 cut(s) 1221
HpaII CCGG 4 cut(s) 383, 594, 612, 828
HphI GGTGA 7 cut(s) 272, 311, 427, 626, 793, 967, 1075
Hpy166II GTNNAC 6 cut(s) 88, 730, 759, 801, 1066, 1221
Hpy188I TCNGA 7 cut(s) 66, 78, 352, 523, 792, 935, 973
Hpy188III TCNNGA 6 cut(s) 460, 731, 863, 1012, 1283, 1332
Hpy8I GTNNAC 6 cut(s) 88, 730, 759, 801, 1066, 1221
Hpy99I CGWCG 3 cut(s) 190, 627, 983
HpyAV CCTTC 3 cut(s) 94, 166, 1227
HpyCH4III ACNGT 7 cut(s) 28, 260, 313, 756, 798, 805, 1317
HpyCH4IV ACGT 2 cut(s) 978, 1260
HpyCH4V TGCA 1 cut(s) 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 196, 497, 617
HpyF3I CTNAG 7 cut(s) 65, 77, 180, 349, 522, 1052, 1202
HpySE526I ACGT 2 cut(s) 978, 1260
Hsp92II CATG 9 cut(s) 119, 163, 235, 703, 788, 827, 1033, 1276, 1335
Ksp22I TGATCA 1 cut(s) 882
KspAI GTTAAC 1 cut(s) 1221
Kzo9I GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
LmnI GCTCC 5 cut(s) 133, 379, 511, 936, 1071
Lsp1109I GCAGC 3 cut(s) 301, 925, 1057
LweI GCATC 1 cut(s) 607
MaeI CTAG 2 cut(s) 503, 656
MaeII ACGT 2 cut(s) 978, 1260
MaeIII GTNAC 4 cut(s) 48, 260, 433, 658
MalI GATC 7 cut(s) 320, 520, 789, 861, 884, 1176, 1281
MbiI CCGCTC 1 cut(s) 96
MboI GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
MboII GAAGA 5 cut(s) 204, 207, 762, 889, 1196
MflI RGATCY 2 cut(s) 518, 859
MhlI GDGCHC 2 cut(s) 850, 900
MlsI TGGCCA 4 cut(s) 5, 222, 751, 822
MluCI AATT 3 cut(s) 280, 887, 1291
MluI ACGCGT 1 cut(s) 197
MluNI TGGCCA 4 cut(s) 5, 222, 751, 822
MlyI GAGTC 2 cut(s) 826, 1124
Mox20I TGGCCA 4 cut(s) 5, 222, 751, 822
MscI TGGCCA 4 cut(s) 5, 222, 751, 822
MseI TTAA 3 cut(s) 60, 855, 1220
MslI CAYNNNNRTG 3 cut(s) 314, 911, 1271
Msp20I TGGCCA 4 cut(s) 5, 222, 751, 822
MspA1I CMGCKG 2 cut(s) 292, 478
MspI CCGG 4 cut(s) 383, 594, 612, 828
MspR9I CCNGG 4 cut(s) 829, 919, 1104, 1127
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 3 cut(s) 919, 1104, 1127
MvnI CGCG 3 cut(s) 199, 1154, 1179
MwoI GCNNNNNNNGC 4 cut(s) 142, 196, 497, 617
NciI CCSGG 1 cut(s) 829
NcoI CCATGG 1 cut(s) 699
NdeII GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
NlaIII CATG 9 cut(s) 119, 163, 235, 703, 788, 827, 1033, 1276, 1335
NlaIV GGNNCC 3 cut(s) 381, 642, 994
NmuCI GTSAC 4 cut(s) 48, 260, 433, 658
OliI CACNNNNGTG 1 cut(s) 314
PagI TCATGA 1 cut(s) 1331
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 4 cut(s) 684, 923, 1001, 1324
PflMI CCANNNNNTGG 2 cut(s) 454, 1030
PkrI GCNGC 8 cut(s) 291, 446, 490, 547, 940, 986, 1047, 1060
Ple19I CGATCG 1 cut(s) 1177
PleI GAGTC 2 cut(s) 826, 1124
PpsI GAGTC 2 cut(s) 826, 1124
PpuMI RGGWCCY 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 900
Psp5II RGGWCCY 1 cut(s) 641
Psp6I CCWGG 3 cut(s) 917, 1102, 1125
PspEI GGTNACC 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 474, 1134
PspGI CCWGG 3 cut(s) 917, 1102, 1125
PspN4I GGNNCC 3 cut(s) 381, 642, 994
PspPI GGNCC 6 cut(s) 110, 143, 609, 641, 781, 1250
PspPPI RGGWCCY 1 cut(s) 641
PsuI RGATCY 2 cut(s) 518, 859
PvuI CGATCG 1 cut(s) 1177
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 2 cut(s) 602, 1259
RsaNI GTAC 2 cut(s) 601, 1258
RseI CAYNNNNRTG 3 cut(s) 314, 911, 1271
SacI GAGCTC 1 cut(s) 900
SaqAI TTAA 3 cut(s) 60, 855, 1220
SatI GCNGC 8 cut(s) 290, 445, 489, 546, 939, 985, 1046, 1059
Sau3AI GATC 7 cut(s) 318, 518, 787, 859, 882, 1174, 1279
Sau96I GGNCC 6 cut(s) 110, 143, 609, 641, 781, 1250
SchI GAGTC 2 cut(s) 826, 1124
ScrFI CCNGG 4 cut(s) 829, 919, 1104, 1127
SduI GDGCHC 2 cut(s) 850, 900
SfaNI GCATC 1 cut(s) 607
SinI GGWCC 3 cut(s) 641, 781, 1250
SmiMI CAYNNNNRTG 3 cut(s) 314, 911, 1271
Sse9I AATT 3 cut(s) 280, 887, 1291
SspMI CTAG 2 cut(s) 503, 656
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 4 cut(s) 827, 917, 1102, 1125
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 7 cut(s) 28, 260, 313, 756, 798, 805, 1317
TaiI ACGT 2 cut(s) 981, 1263
TaqI TCGA 2 cut(s) 252, 709
TasI AATT 3 cut(s) 280, 887, 1291
TatI WGTACW 1 cut(s) 600
TauI GCSGC 5 cut(s) 447, 491, 548, 987, 1061
TfiI GAWTC 4 cut(s) 684, 923, 1001, 1324
Tru1I TTAA 3 cut(s) 60, 855, 1220
Tru9I TTAA 3 cut(s) 60, 855, 1220
TscAI CASTG 4 cut(s) 33, 57, 801, 823
TseFI GTSAC 4 cut(s) 48, 260, 433, 658
TseI GCWGC 3 cut(s) 289, 938, 1045
Tsp45I GTSAC 4 cut(s) 48, 260, 433, 658
TspDTI ATGAA 4 cut(s) 291, 459, 880, 1014
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 4 cut(s) 33, 57, 801, 823
Van91I CCANNNNNTGG 2 cut(s) 454, 1030
VpaK11BI GGWCC 3 cut(s) 641, 781, 1250
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 758
XspI CTAG 2 cut(s) 503, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.