Rroxscaffold_3G00262530

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
56555307 .. 56560590
5284 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00262530.1

Sequence Viewer

Length: 1317 bp
ATGGCCAAATTTCTGAGCATTTTCACAATGAAGAACTTGCTTGTGCTGTCTCTGGCGCTCAATCTAAGCTTGATTATGAGGGTTTTTTTCGATGGTGAGAAACAGGGCTTCTTCTTCTCCGTGGAGCAGAGAGGTCCATCAATGGCCGAAGACAAGGAAGCTCACGCAACCCAGTGGACGCTTCAGTCAGTTTCTTCTTCGTCTGGCCAAGAAGGCATGGAAAAAGTCATTAACCTGGACCATGGTGACCCGACTATGTATGAAAAATACTGGATGATGATGGGTGAGAGAACCACAGTTGTGATTCCTGGGTGGCACTCCATGAGCTATTTCTCAGATGTTAAAAACCTCTGCTGGTTTTTGGAGCCCGAGTTTGCCAAGCAGGTTTTCAGATTACACAGAGCTGTGGGCAATGCCGTCACTGAAGGCCGTCACATTGTGGTTGGGACAGGTTCATCTCAGCTCATTTTAGCTGCGCTTTTCGCTCTTTCTCCGGAAGATGGATCTGAGCCCATGAGTGTGGTATCTACAGCCCCATACTACTCGTCTTACCCTGTAATGAGTAACCACCTCAAGTCGGGCCTGTACGTCTGGGCTGGAGATGCCCGAAGCTTCAACAAAGAAGGCCCATACATTGAGTTGGTCACCTCTCCAAACAACCCTGATGGTTTTGTCAGGCACTCTATGGTGAATCGAAGTGGAGGCATATTGGTGCATGATTTGGCTTACTACTGGCCACAATATACCCCCATTTCCTCACCTGCAGATCATGATCTGACATTGTTCACCGTCTCAAAAGCCACTGGTCATGCCGGGACGCGCATTGGGTGGGCTCTAGTGAAAGATGCAGAAGTGGCCAAGAAAATGGTCAAGTTCATAGAGCTCAACACCATTGGCGTCTCCAGGGATTCACAGCTTCGAGCTGCCAAGATCTTGGAAGTCATGACCAATACCACTGAAATTGGCAGCTCGGACTCAGGGGAATCCTTCTTTGAGATAAGCTACCACCTCATGGCAGAGAGGTGGCGACTGCTTCACGCGGCGGTAAACAATGGCAGTATGTTTAGTCTGCCTGACTTTGCACCAGGGTTCTGCCACTTCCTTCAACAGGAGACGCAGCCTCAACCTGCTTTCGCATGGCTCAAATGTGAAGATGATGCCGTGGAGGATTGCGAAAGCTTCCTGAAAGGGCACAACATTTTGACGCGAGGAGGAAGAAGTTTTGGGGTTAGCCCAAAGTATGTCCGCATAAGCATGCTGGATAGGGACATTAACTTCAGTTTGTTTCTGAAGAGATTATCCATAATCCAGTCATGA

Protein Analysis

438

Amino Acids

49.03

Weight (kDa)

6.07

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 77 - 435 3.4e-148 Allinase
Aminotran_1_2 PF00155 122 - 420 1.3e-13 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 769
AasI GACNNNNNNGTC 1 cut(s) 184
Acc36I ACCTGC 3 cut(s) 373, 769, 1135
AccB7I CCANNNNNTGG 1 cut(s) 1012
AccII CGCG 3 cut(s) 820, 1040, 1207
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 3 cut(s) 1040, 1043, 1246
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 5 cut(s) 3, 144, 205, 734, 855
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 4 cut(s) 167, 444, 1261, 1310
AcyI GRCGYC 1 cut(s) 897
AdeI CACNNNGTG 1 cut(s) 439
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 4 cut(s) 500, 577, 1012, 1108
AgsI TTSAA 2 cut(s) 616, 1106
AjnI CCWGG 4 cut(s) 234, 307, 902, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AleI CACNNNNGTG 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 4 cut(s) 54, 796, 904, 1106
AlwI GGATC 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 368
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 8 cut(s) 3, 144, 205, 427, 580, 625, 734, 855
ApeKI GCWGC 4 cut(s) 473, 923, 966, 1117
ApoI RAATTY 1 cut(s) 8
AspLEI GCGC 3 cut(s) 58, 478, 822
AspS9I GGNCC 4 cut(s) 134, 238, 580, 626
AsuC2I CCSGG 1 cut(s) 814
AsuHPI GGTGA 7 cut(s) 107, 257, 296, 637, 700, 750, 778
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 134, 238
BaeGI GKGCMC 1 cut(s) 1194
BalI TGGCCA 4 cut(s) 5, 207, 736, 857
BanII GRGCYC 4 cut(s) 369, 513, 835, 885
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 4 cut(s) 460, 910, 978, 1129
BccI CCATC 5 cut(s) 86, 145, 274, 494, 659
BceAI ACGGC 3 cut(s) 401, 414, 1145
BciT130I CCWGG 4 cut(s) 236, 309, 904, 1086
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 4 cut(s) 54, 796, 904, 1106
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 2 cut(s) 528, 762
BfoI RGCGCY 1 cut(s) 59
BfuAI ACCTGC 3 cut(s) 373, 769, 1135
BglI GCCNNNNNGGC 1 cut(s) 213
BglII AGATCT 1 cut(s) 930
BisI GCNGC 5 cut(s) 474, 924, 967, 1041, 1118
BlsI GCNGC 5 cut(s) 475, 925, 968, 1042, 1119
Bme1390I CCNGG 5 cut(s) 236, 309, 814, 904, 1086
Bme18I GGWCC 2 cut(s) 134, 238
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 4 cut(s) 134, 238, 580, 626
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 5 cut(s) 236, 309, 814, 904, 1086
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 3 cut(s) 592, 835, 1147
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 2 cut(s) 618, 886
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 6 cut(s) 120, 241, 308, 903, 1085, 1161
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 500, 577, 1012, 1108
Bse1I ACTGG 5 cut(s) 172, 275, 737, 808, 1309
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 771
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 4 cut(s) 236, 309, 904, 1086
BseDI CCNNGG 6 cut(s) 120, 241, 308, 903, 1085, 1161
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 4 cut(s) 500, 577, 1012, 1108
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 5 cut(s) 5, 348, 473, 498, 990
BseNI ACTGG 5 cut(s) 172, 275, 737, 808, 1309
BseRI GAGGAG 1 cut(s) 1224
BseSI GKGCMC 1 cut(s) 1194
BseXI GCAGC 4 cut(s) 460, 910, 978, 1129
Bsh1236I CGCG 3 cut(s) 820, 1040, 1207
BshFI GGCC 8 cut(s) 5, 146, 207, 429, 582, 627, 736, 857
BsiHKAI GWGCWC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 494, 813
BslFI GGGAC 3 cut(s) 460, 829, 1280
BslI CCNNNNNNNGG 4 cut(s) 500, 577, 1012, 1108
BsmAI GTCTC 4 cut(s) 54, 796, 904, 1106
BsmBI CGTCTC 3 cut(s) 796, 904, 1106
BsmFI GGGAC 3 cut(s) 460, 829, 1280
BsnI GGCC 8 cut(s) 5, 146, 207, 429, 582, 627, 736, 857
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 5 cut(s) 369, 513, 835, 885, 1194
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 4 cut(s) 503, 766, 772, 930
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 3 cut(s) 1040, 1043, 1246
BspANI GGCC 8 cut(s) 5, 146, 207, 429, 582, 627, 736, 857
BspCNI CTCAG 5 cut(s) 6, 347, 472, 499, 989
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 3 cut(s) 820, 1040, 1207
BspHI TCATGA 3 cut(s) 769, 942, 1313
BspLI GGNNCC 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 3 cut(s) 373, 769, 1135
BspPI GGATC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 5 cut(s) 172, 275, 737, 808, 1309
BssECI CCNNGG 6 cut(s) 120, 241, 308, 903, 1085, 1161
BssMI GATC 4 cut(s) 503, 766, 772, 930
BssNI GRCGYC 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 4 cut(s) 236, 309, 904, 1086
Bst4CI ACNGT 2 cut(s) 298, 790
Bst6I CTCTTC 1 cut(s) 1286
BstACI GRCGYC 1 cut(s) 897
BstC8I GCNNGC 1 cut(s) 1256
BstDEI CTNAG 6 cut(s) 14, 65, 334, 459, 507, 976
BstDSI CCRYGG 3 cut(s) 120, 241, 1161
BstEII GGTNACC 2 cut(s) 245, 643
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 3 cut(s) 820, 1040, 1207
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 3 cut(s) 58, 478, 822
BstKTI GATC 4 cut(s) 506, 769, 775, 933
BstMAI GTCTC 4 cut(s) 54, 796, 904, 1106
BstMBI GATC 4 cut(s) 503, 766, 772, 930
BstMWI GCNNNNNNNGC 4 cut(s) 213, 482, 602, 854
BstNI CCWGG 4 cut(s) 236, 309, 904, 1086
BstNSI RCATGY 1 cut(s) 1258
BstPI GGTNACC 2 cut(s) 245, 643
BstSCI CCNGG 5 cut(s) 234, 307, 812, 902, 1084
BstSFI CTRYAG 2 cut(s) 528, 762
BstSLI GKGCMC 1 cut(s) 1194
BstUI CGCG 3 cut(s) 820, 1040, 1207
BstV1I GCAGC 4 cut(s) 460, 910, 978, 1129
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 503, 930
BstXI CCANNNNNNTGG 3 cut(s) 520, 865, 934
BstYI RGATCY 2 cut(s) 503, 930
BsuRI GGCC 8 cut(s) 5, 146, 207, 429, 582, 627, 736, 857
BtgI CCRYGG 3 cut(s) 120, 241, 1161
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 179, 420, 801, 954
BveI ACCTGC 3 cut(s) 373, 769, 1135
Cac8I GCNNGC 1 cut(s) 1256
CciI TCATGA 3 cut(s) 769, 942, 1313
CfoI GCGC 3 cut(s) 58, 478, 822
Cfr13I GGNCC 4 cut(s) 134, 238, 580, 626
CseI GACGC 5 cut(s) 187, 826, 886, 1123, 1213
Csp6I GTAC 1 cut(s) 586
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 6 cut(s) 14, 65, 334, 459, 507, 976
DpnI GATC 4 cut(s) 505, 768, 774, 932
DpnII GATC 4 cut(s) 503, 766, 772, 930
DraIII CACNNNGTG 1 cut(s) 439
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 5 cut(s) 3, 144, 205, 734, 855
Eam1104I CTCTTC 1 cut(s) 1286
EarI CTCTTC 1 cut(s) 1286
Ecl136II GAGCTC 1 cut(s) 883
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 4 cut(s) 369, 513, 835, 885
Eco47I GGWCC 2 cut(s) 134, 238
Eco53kI GAGCTC 1 cut(s) 883
Eco57I CTGAAG 4 cut(s) 167, 444, 1261, 1310
Eco88I CYCGRG 1 cut(s) 368
Eco91I GGTNACC 2 cut(s) 245, 643
EcoICRI GAGCTC 1 cut(s) 883
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO65I GGTNACC 2 cut(s) 245, 643
EcoRII CCWGG 4 cut(s) 234, 307, 902, 1084
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 4 cut(s) 369, 513, 835, 885
ErhI CCWWGG 1 cut(s) 241
Esp3I CGTCTC 3 cut(s) 796, 904, 1106
FaqI GGGAC 3 cut(s) 460, 829, 1280
Fnu4HI GCNGC 5 cut(s) 474, 924, 967, 1041, 1118
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 4 cut(s) 369, 513, 835, 885
Fsp4HI GCNGC 5 cut(s) 474, 924, 967, 1041, 1118
FspBI CTAG 1 cut(s) 836
GlaI GCGC 3 cut(s) 57, 477, 821
GluI GCNGC 5 cut(s) 474, 924, 967, 1041, 1118
GsuI CTGGAG 2 cut(s) 618, 886
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 8 cut(s) 5, 146, 207, 429, 582, 627, 736, 857
HapII CCGG 2 cut(s) 494, 813
HgaI GACGC 5 cut(s) 187, 826, 886, 1123, 1213
HhaI GCGC 3 cut(s) 58, 478, 822
Hin1I GRCGYC 1 cut(s) 897
Hin6I GCGC 3 cut(s) 56, 476, 820
HinP1I GCGC 3 cut(s) 56, 476, 820
HindIII AAGCTT 3 cut(s) 67, 610, 1177
HinfI GANTC 5 cut(s) 304, 691, 908, 974, 983
HpaII CCGG 2 cut(s) 494, 813
HphI GGTGA 7 cut(s) 107, 257, 296, 637, 700, 750, 778
Hpy166II GTNNAC 3 cut(s) 177, 786, 1048
Hpy188I TCNGA 7 cut(s) 15, 337, 392, 508, 777, 973, 1290
Hpy188III TCNNGA 5 cut(s) 494, 770, 943, 1183, 1314
Hpy8I GTNNAC 3 cut(s) 177, 786, 1048
HpyAV CCTTC 5 cut(s) 206, 419, 617, 997, 1112
HpyCH4III ACNGT 2 cut(s) 298, 790
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 715, 764, 848, 1082
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 482, 602, 854
HpyF3I CTNAG 6 cut(s) 14, 65, 334, 459, 507, 976
HpySE526I ACGT 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 897
HspAI GCGC 3 cut(s) 56, 476, 820
Kpn2I TCCGGA 1 cut(s) 493
Kzo9I GATC 4 cut(s) 503, 766, 772, 930
LmnI GCTCC 2 cut(s) 124, 364
Lsp1109I GCAGC 4 cut(s) 460, 910, 978, 1129
LweI GCATC 3 cut(s) 592, 835, 1147
MaeI CTAG 1 cut(s) 836
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 5 cut(s) 245, 418, 431, 563, 643
MalI GATC 4 cut(s) 505, 768, 774, 932
MboI GATC 4 cut(s) 503, 766, 772, 930
MflI RGATCY 2 cut(s) 503, 930
MhlI GDGCHC 5 cut(s) 369, 513, 835, 885, 1194
MlsI TGGCCA 4 cut(s) 5, 207, 736, 857
MluCI AATT 2 cut(s) 8, 960
MluNI TGGCCA 4 cut(s) 5, 207, 736, 857
MlyI GAGTC 1 cut(s) 968
Mox20I TGGCCA 4 cut(s) 5, 207, 736, 857
MroI TCCGGA 1 cut(s) 493
MscI TGGCCA 4 cut(s) 5, 207, 736, 857
MseI TTAA 3 cut(s) 231, 342, 1272
MslI CAYNNNNRTG 4 cut(s) 299, 518, 710, 1253
Msp20I TGGCCA 4 cut(s) 5, 207, 736, 857
MspI CCGG 2 cut(s) 494, 813
MspR9I CCNGG 5 cut(s) 236, 309, 814, 904, 1086
MvaI CCWGG 4 cut(s) 236, 309, 904, 1086
MvnI CGCG 3 cut(s) 820, 1040, 1207
MwoI GCNNNNNNNGC 4 cut(s) 213, 482, 602, 854
NciI CCSGG 1 cut(s) 814
NcoI CCATGG 1 cut(s) 241
NdeII GATC 4 cut(s) 503, 766, 772, 930
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 4 cut(s) 245, 418, 431, 643
NspI RCATGY 1 cut(s) 1258
OliI CACNNNNGTG 1 cut(s) 299
PaeI GCATGC 1 cut(s) 1258
PagI TCATGA 3 cut(s) 769, 942, 1313
PaqCI CACCTGC 1 cut(s) 769
PfeI GAWTC 4 cut(s) 304, 691, 908, 983
PflMI CCANNNNNTGG 1 cut(s) 1012
PkrI GCNGC 5 cut(s) 475, 925, 968, 1042, 1119
PleI GAGTC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 968
Psp124BI GAGCTC 1 cut(s) 885
Psp6I CCWGG 4 cut(s) 234, 307, 902, 1084
PspEI GGTNACC 2 cut(s) 245, 643
PspGI CCWGG 4 cut(s) 234, 307, 902, 1084
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 4 cut(s) 134, 238, 580, 626
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 503, 930
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 4 cut(s) 299, 518, 710, 1253
SacI GAGCTC 1 cut(s) 885
SaqAI TTAA 3 cut(s) 231, 342, 1272
SatI GCNGC 5 cut(s) 474, 924, 967, 1041, 1118
Sau3AI GATC 4 cut(s) 503, 766, 772, 930
Sau96I GGNCC 4 cut(s) 134, 238, 580, 626
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 5 cut(s) 236, 309, 814, 904, 1086
SduI GDGCHC 5 cut(s) 369, 513, 835, 885, 1194
SfaNI GCATC 3 cut(s) 592, 835, 1147
SfcI CTRYAG 2 cut(s) 528, 762
SinI GGWCC 2 cut(s) 134, 238
SmiMI CAYNNNNRTG 4 cut(s) 299, 518, 710, 1253
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SphI GCATGC 1 cut(s) 1258
Sse9I AATT 2 cut(s) 8, 960
SsiI CCGC 3 cut(s) 1040, 1043, 1246
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 885
StyD4I CCNGG 5 cut(s) 234, 307, 812, 902, 1084
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 298, 790
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 90, 694, 919
TasI AATT 2 cut(s) 8, 960
TauI GCSGC 1 cut(s) 1043
TfiI GAWTC 4 cut(s) 304, 691, 908, 983
Tru1I TTAA 3 cut(s) 231, 342, 1272
Tru9I TTAA 3 cut(s) 231, 342, 1272
TscAI CASTG 4 cut(s) 179, 427, 808, 961
TseFI GTSAC 4 cut(s) 245, 418, 431, 643
TseI GCWGC 4 cut(s) 473, 923, 966, 1117
Tsp45I GTSAC 4 cut(s) 245, 418, 431, 643
TspDTI ATGAA 4 cut(s) 44, 276, 444, 865
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 4 cut(s) 179, 427, 808, 961
Van91I CCANNNNNTGG 1 cut(s) 1012
VpaK11BI GGWCC 2 cut(s) 134, 238
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 1258
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.