Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002684

Physical Location & Seq

Genomic Coordinates Forward (+)

487262 .. 488173

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACGACGACGAGGAAGAAGGTGCAGAAGAAGTGCAAAATCAGAGGCTTCACTCTTAAAGTCGACGCCCTCGAAGAGATTCTATCCTTCGTCTCCCGATTCGACGATTCCGACCACGACGGCGCCATCGATGTCGTCCTCGAGCAGCTCCAGCTCCAACCCCTTAAGTCTTCCATAATCGACAAGCAGACGGTCCAGAGCGTCGTCAGCATTTTATTACAGGCTGACGCCGCCGTAGGCGACGAAACCCTAGGTGGTGGTTTGGGCGTATGCGACGCCTTCTTGGTCCCAAAGTTCCGATATGATCCGATCAAGAAGATTTTCTACAAGCCTAGTGAGAGCCAGCCGCCGATTCATGGAAATGCGTCCGCGAAAGCGGCTCTGTATAAGGATAGGTTTCTCTTGATCTCCCAGAGGCTCTCTCGCCATCAGCATTTTGCCAAACGAGCCTTTGATTCTGAAATGTCTGATTTCGGAAGCTGTGAGATATCTCAAATTCAGTCTCTGGTTGGACAAACCGGAAGGAGATGGGTGATGGGTTTGATATCGCAGTTGGAAGATGGTCATTTTTACCTGGAAGACCTTACTGCATCGGTGGAAATCAACTTATCCAATGCAATATCCTTTACTGACTCTCTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006952 GO:0007154 GO:0007275 GO:0008150 GO:0008483 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009888 GO:0009908 GO:0009958 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010087 GO:0012505 GO:0016020 GO:0016740 GO:0016769 GO:0019827 GO:0022414 GO:0022622 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048856 GO:0050362 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070529 GO:0071496 GO:0080097 GO:0090567 GO:0090696 GO:0098542 GO:0098727 GO:0098827 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

Alliinase_C

Protein Analysis

214

Amino Acids

23.87

Weight (kDa)

6.52

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dpoe2NT	PF12213	5 - 69	1.1e-09	DNA polymerases epsilon N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24670 AT4G24670
fragaria_vesca	FvH4_5g05880 FvH4_5g05880 FvH4_5g05880 FvH4_5g05900 FvH4_7g02760 FvH4_7g02760
malus_domestica	MD06G1169600.v1.1 MD14G1175000.v1.1
prunus_persica	Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1 Prupe.5G168300_v2.0.a1
pyrus_communis	pycom06g15090
rosa_chinensis	RchiOBHm_Chr7g0192931 RchiOBHm_Chr7g0192941
rosa_laevigata	RLG00000004311 RLG00000004312
rosa_multiflora	Rmu_co8488627.1_g000001 Rmu_sc0002040.1_g000057 Rmu_sc0002040.1_g000058
rosa_roxburghii	Rroxscaffold_3G00262530 Rroxscaffold_3G00262540
rosa_rugosa	Rorug07G0005900 Rorug07G0006000 Rorug07G0006100 Rorug07G0006200 Rorug07G0006300 Rorug07G0006400
rosa_samantha	Rh7AG131400 Rh7AG131500 Rh7BG132200 Rh7BG132300 Rh7CG135500 Rh7CG135600 Rh7DG133400 Rh7DG133500
rosa_wichuraiana	Rw7G011210 Rw7G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	371
AciI	CCGC	4 cut(s)	231, 347, 369, 377
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	495
AcyI	GRCGYC	4 cut(s)	66, 123, 228, 276
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflII	CTTAAG	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	3 cut(s)	148, 154, 480
AluI	AGCT	3 cut(s)	148, 154, 480
Alw26I	GTCTC	2 cut(s)	97, 507
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	2 cut(s)	78, 320
AspA2I	CCTAGG	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	193, 286
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	193, 286
AvrII	CCTAGG	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	2 cut(s)	162, 585
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	5 cut(s)	134, 435, 522, 529, 554
BceAI	ACGGC	2 cut(s)	136, 218
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	97, 507
BfaI	CTAG	2 cut(s)	251, 333
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	4 cut(s)	146, 231, 347, 378
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	4 cut(s)	147, 232, 348, 379
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	193, 286
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	193, 286
BmiI	GGNNCC	2 cut(s)	124, 288
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	2 cut(s)	162, 585
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	4 cut(s)	66, 123, 228, 276
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	97, 507
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	304, 309, 405
BspACI	CCGC	4 cut(s)	231, 347, 369, 377
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	124, 288
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	304, 309, 405
BssNI	GRCGYC	4 cut(s)	66, 123, 228, 276
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	69, 642
BstACI	GRCGYC	4 cut(s)	66, 123, 228, 276
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	307, 312, 408
BstMAI	GTCTC	2 cut(s)	97, 507
BstMBI	GATC	3 cut(s)	304, 309, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 207, 230, 377, 446
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	162, 585
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	193, 286
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	5 cut(s)	74, 190, 236, 284, 354
CviAII	CATG	1 cut(s)	356
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	3 cut(s)	306, 311, 407
DpnII	GATC	3 cut(s)	304, 309, 405
Eam1104I	CTCTTC	2 cut(s)	69, 642
EarI	CTCTTC	2 cut(s)	69, 642
Eco130I	CCWWGG	1 cut(s)	250
Eco32I	GATATC	2 cut(s)	489, 546
Eco47I	GGWCC	2 cut(s)	193, 286
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	2 cut(s)	489, 546
EcoT14I	CCWWGG	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	359
FaiI	YATR	5 cut(s)	176, 271, 303, 357, 387
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	146, 231, 347, 378
Fsp4HI	GCNGC	4 cut(s)	146, 231, 347, 378
FspBI	CTAG	2 cut(s)	251, 333
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	4 cut(s)	146, 231, 347, 378
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	5 cut(s)	74, 190, 236, 284, 354
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	4 cut(s)	66, 123, 228, 276
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	6 cut(s)	79, 99, 107, 352, 455, 632
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	7 cut(s)	44, 112, 299, 309, 460, 469, 476
Hpy188III	TCNNGA	4 cut(s)	96, 196, 313, 403
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	8 cut(s)	10, 13, 68, 107, 122, 206, 245, 278
HpyAV	CCTTC	4 cut(s)	13, 97, 289, 516
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	4 cut(s)	25, 36, 590, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 207, 230, 377, 446
Hsp92I	GRCGYC	4 cut(s)	66, 123, 228, 276
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	3 cut(s)	304, 309, 405
LmnI	GCTCC	2 cut(s)	153, 159
LpnPI	CCDG	9 cut(s)	164, 206, 209, 356, 425, 491, 532, 560, 587
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	2 cut(s)	251, 333
MalI	GATC	3 cut(s)	306, 311, 407
MboI	GATC	3 cut(s)	304, 309, 405
MboII	GAAGA	8 cut(s)	28, 40, 86, 162, 328, 569, 590, 629
MluCI	AATT	1 cut(s)	495
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	4 cut(s)	135, 181, 490, 534
MnlI	CCTC	5 cut(s)	6, 38, 80, 149, 408
MroXI	GAANNNNTTC	2 cut(s)	78, 320
MseI	TTAA	3 cut(s)	57, 165, 643
MslI	CAYNNNNRTG	1 cut(s)	360
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	5 cut(s)	151, 207, 230, 377, 446
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	3 cut(s)	304, 309, 405
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	124, 288
PaeR7I	CTCGAG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 108, 126
PdmI	GAANNNNTTC	2 cut(s)	78, 320
PfeI	GAWTC	5 cut(s)	79, 99, 107, 352, 455
PkrI	GCNGC	4 cut(s)	147, 232, 348, 379
PleI	GAGTC	1 cut(s)	626
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	124, 288
PspPI	GGNCC	2 cut(s)	193, 286
PspXI	VCTCGAGB	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	57, 165, 643
SatI	GCNGC	4 cut(s)	146, 231, 347, 378
Sau3AI	GATC	3 cut(s)	304, 309, 405
Sau96I	GGNCC	2 cut(s)	193, 286
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	8 cut(s)	24, 150, 156, 256, 398, 482, 576, 585
SfaNI	GCATC	1 cut(s)	599
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	193, 286
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	140, 164
SmoI	CTYRAG	2 cut(s)	140, 164
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	4 cut(s)	231, 347, 369, 377
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	251, 333
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	6 cut(s)	63, 72, 102, 129, 141, 180
TasI	AATT	1 cut(s)	495
TauI	GCSGC	3 cut(s)	233, 349, 380
TfiI	GAWTC	5 cut(s)	79, 99, 107, 352, 455
Tru1I	TTAA	3 cut(s)	57, 165, 643
Tru9I	TTAA	3 cut(s)	57, 165, 643
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	344
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	193, 286
XapI	RAATTY	1 cut(s)	495
XhoI	CTCGAG	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	2 cut(s)	78, 320
XspI	CTAG	2 cut(s)	251, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.