Rmu_sc0002040.1_g000058

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002040.1
Physical Location & Seq
Reverse (-)
246005 .. 250157
4153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002040.1_g000058.1.cds

Sequence Viewer

Length: 1290 bp
atgaggaacttgcttgtgctgtctctggcgctcaatctaagcttgattatgagggtttttttcgatggtgagaaacagggcttcttcttctccgcggagcagagaggtccatcaatggccgaagacaaggaagctcacgcaacccagaggacgcttcagtcagtttcttcttcgtctggccaagaaggcatggaaaaagtcattaatctggaccatggtgacccgactatgtatgaaaaatactggatgatgatgggtgagagaaccacagttgtgattcctgggtggcactccatgagctatttctcagatgttaaaaacctctgctggtttttggagcccgagtttgccaagcaggttttcagattacacagagttgtgggcaatgccgtcactgaaggccgtcacattgtggttgggacaggttcatctcagctcattttagctgcgcttttcgctctttctccgaaagatggatctgagcccatgagtgtggtatctacagccccatactactcgtcttaccctgtaatgagtaaccacctcaagtccggcctgtacgtctgggctggagatgcccgaagcttcaacaaagaaggcccatacattgagttggtcacctctccgaacaaccctgatggttttgtcaggcactctatggtgaatcgaactggaggcatattggtacatgatttggcttactattggccacaatatacccccatttcctcacctgcagatcatgatctgacattattcaccgtctcaaaagccactggtcatgccgggacgcgcattgggtgggctctagtgaaagatgccgaagtggccaagaaaatggtcaagttcatagagctcaacaccattggcgtctccagggattcacagcttcgagctgccaagatcttggaagtcatgaccaacaccaccgaaattggcagctcggattcaggggaatccttctttgagataatctaccacctcatggcagagaggtggcggctgcttcaagcggcggtgaacaatggcagtatgtttagtctgcctgactttgcaccagggttctgccacttccttcaacaggagacgcagcctcaacctgctttcgcatggctcaaatgtgaagatgatgccgtggaggattgcgaaagcttcctgaaagggcacaagattttgacgcgaggaggaagaagttttggggttagcccaaagtatgtccgcataagcatgctggatagggacattaacttcagtttgtttctgaagagattatccataatccagtcatga

Protein Analysis

429

Amino Acids

48.03

Weight (kDa)

6.36

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 742
AasI GACNNNNNNGTC 1 cut(s) 157
Acc36I ACCTGC 3 cut(s) 346, 742, 1108
AccB7I CCANNNNNTGG 1 cut(s) 985
AccII CGCG 3 cut(s) 95, 793, 1180
AciI CCGC 6 cut(s) 93, 95, 1000, 1013, 1016, 1219
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 4 cut(s) 117, 178, 707, 828
AcuI CTGAAG 4 cut(s) 140, 417, 1234, 1283
AcyI GRCGYC 1 cut(s) 870
AdeI CACNNNGTG 1 cut(s) 412
AfaI GTAC 2 cut(s) 560, 687
AfiI CCNNNNNNNGG 3 cut(s) 473, 985, 1081
AgsI TTSAA 3 cut(s) 589, 1010, 1079
AjnI CCWGG 3 cut(s) 280, 875, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AleI CACNNNNGTG 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 4 cut(s) 27, 769, 877, 1079
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 7 cut(s) 117, 178, 400, 553, 598, 707, 828
ApeKI GCWGC 5 cut(s) 446, 896, 939, 1003, 1090
AseI ATTAAT 1 cut(s) 204
AspLEI GCGC 3 cut(s) 31, 451, 795
AspS9I GGNCC 3 cut(s) 107, 211, 599
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 8 cut(s) 80, 230, 269, 610, 673, 723, 751, 1030
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 107, 211
BaeGI GKGCMC 1 cut(s) 1167
BalI TGGCCA 3 cut(s) 180, 709, 830
BanII GRGCYC 4 cut(s) 342, 486, 808, 858
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 5 cut(s) 433, 883, 951, 990, 1102
BccI CCATC 5 cut(s) 59, 118, 247, 467, 632
BceAI ACGGC 3 cut(s) 374, 387, 1118
BciT130I CCWGG 3 cut(s) 282, 877, 1059
BcnI CCSGG 1 cut(s) 787
BcoDI GTCTC 4 cut(s) 27, 769, 877, 1079
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 2 cut(s) 501, 735
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 3 cut(s) 346, 742, 1108
BglI GCCNNNNNGGC 2 cut(s) 186, 827
BglII AGATCT 1 cut(s) 903
BisI GCNGC 7 cut(s) 447, 897, 940, 1001, 1004, 1014, 1091
BlsI GCNGC 7 cut(s) 448, 898, 941, 1002, 1005, 1015, 1092
Bme1390I CCNGG 4 cut(s) 282, 787, 877, 1059
Bme18I GGWCC 2 cut(s) 107, 211
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 107, 211, 599
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 4 cut(s) 282, 787, 877, 1059
BmsI GCATC 3 cut(s) 565, 808, 1120
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 3 cut(s) 591, 693, 859
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 6 cut(s) 93, 214, 281, 876, 1058, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 985, 1081
Bse1I ACTGG 4 cut(s) 248, 676, 781, 1282
Bse3DI GCAATG 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 3 cut(s) 282, 877, 1059
BseDI CCNNGG 6 cut(s) 93, 214, 281, 876, 1058, 1134
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 473, 985, 1081
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 3 cut(s) 321, 446, 471
BseNI ACTGG 4 cut(s) 248, 676, 781, 1282
BseRI GAGGAG 1 cut(s) 1197
BseSI GKGCMC 1 cut(s) 1167
BseXI GCAGC 5 cut(s) 433, 883, 951, 990, 1102
Bsh1236I CGCG 3 cut(s) 95, 793, 1180
BshFI GGCC 7 cut(s) 119, 180, 402, 555, 600, 709, 830
BsiHKAI GWGCWC 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 552, 786
BslFI GGGAC 3 cut(s) 433, 802, 1253
BslI CCNNNNNNNGG 3 cut(s) 473, 985, 1081
BsmAI GTCTC 4 cut(s) 27, 769, 877, 1079
BsmBI CGTCTC 3 cut(s) 769, 877, 1079
BsmFI GGGAC 3 cut(s) 433, 802, 1253
BsnI GGCC 7 cut(s) 119, 180, 402, 555, 600, 709, 830
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 5 cut(s) 342, 486, 808, 858, 1167
Bsp143I GATC 4 cut(s) 476, 739, 745, 903
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 6 cut(s) 93, 95, 1000, 1013, 1016, 1219
BspANI GGCC 7 cut(s) 119, 180, 402, 555, 600, 709, 830
BspCNI CTCAG 3 cut(s) 320, 445, 472
BspFNI CGCG 3 cut(s) 95, 793, 1180
BspHI TCATGA 3 cut(s) 742, 915, 1286
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 3 cut(s) 346, 742, 1108
BspPI GGATC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 4 cut(s) 248, 676, 781, 1282
BssECI CCNNGG 6 cut(s) 93, 214, 281, 876, 1058, 1134
BssMI GATC 4 cut(s) 476, 739, 745, 903
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 282, 877, 1059
Bst4CI ACNGT 2 cut(s) 271, 763
Bst6I CTCTTC 1 cut(s) 1259
BstACI GRCGYC 1 cut(s) 870
BstC8I GCNNGC 1 cut(s) 1229
BstDEI CTNAG 4 cut(s) 38, 307, 432, 480
BstDSI CCRYGG 3 cut(s) 93, 214, 1134
BstEII GGTNACC 2 cut(s) 218, 616
BstENI CCTNNNNNAGG 1 cut(s) 1079
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 3 cut(s) 95, 793, 1180
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 451, 795
BstKTI GATC 4 cut(s) 479, 742, 748, 906
BstMAI GTCTC 4 cut(s) 27, 769, 877, 1079
BstMBI GATC 4 cut(s) 476, 739, 745, 903
BstMWI GCNNNNNNNGC 4 cut(s) 186, 455, 575, 827
BstNI CCWGG 3 cut(s) 282, 877, 1059
BstNSI RCATGY 1 cut(s) 1231
BstPI GGTNACC 2 cut(s) 218, 616
BstSCI CCNGG 4 cut(s) 280, 785, 875, 1057
BstSFI CTRYAG 2 cut(s) 501, 735
BstSLI GKGCMC 1 cut(s) 1167
BstUI CGCG 3 cut(s) 95, 793, 1180
BstV1I GCAGC 5 cut(s) 433, 883, 951, 990, 1102
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 476, 903
BstXI CCANNNNNNTGG 3 cut(s) 493, 838, 907
BstYI RGATCY 2 cut(s) 476, 903
BsuRI GGCC 7 cut(s) 119, 180, 402, 555, 600, 709, 830
BtgI CCRYGG 3 cut(s) 93, 214, 1134
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 393, 774
BveI ACCTGC 3 cut(s) 346, 742, 1108
Cac8I GCNNGC 1 cut(s) 1229
CciI TCATGA 3 cut(s) 742, 915, 1286
CfoI GCGC 3 cut(s) 31, 451, 795
Cfr13I GGNCC 3 cut(s) 107, 211, 599
Cfr42I CCGCGG 1 cut(s) 96
CseI GACGC 5 cut(s) 160, 799, 859, 1096, 1186
Csp6I GTAC 2 cut(s) 559, 686
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviQI GTAC 2 cut(s) 559, 686
DdeI CTNAG 4 cut(s) 38, 307, 432, 480
DpnI GATC 4 cut(s) 478, 741, 747, 905
DpnII GATC 4 cut(s) 476, 739, 745, 903
DraIII CACNNNGTG 1 cut(s) 412
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 4 cut(s) 117, 178, 707, 828
Eam1104I CTCTTC 1 cut(s) 1259
EarI CTCTTC 1 cut(s) 1259
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 4 cut(s) 342, 486, 808, 858
Eco47I GGWCC 2 cut(s) 107, 211
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 4 cut(s) 140, 417, 1234, 1283
Eco88I CYCGRG 1 cut(s) 341
Eco91I GGTNACC 2 cut(s) 218, 616
EcoICRI GAGCTC 1 cut(s) 856
EcoNI CCTNNNNNAGG 1 cut(s) 1079
EcoO65I GGTNACC 2 cut(s) 218, 616
EcoRII CCWGG 3 cut(s) 280, 875, 1057
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 4 cut(s) 342, 486, 808, 858
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 3 cut(s) 769, 877, 1079
FaqI GGGAC 3 cut(s) 433, 802, 1253
Fnu4HI GCNGC 7 cut(s) 447, 897, 940, 1001, 1004, 1014, 1091
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 4 cut(s) 342, 486, 808, 858
Fsp4HI GCNGC 7 cut(s) 447, 897, 940, 1001, 1004, 1014, 1091
FspBI CTAG 1 cut(s) 809
GlaI GCGC 3 cut(s) 30, 450, 794
GluI GCNGC 7 cut(s) 447, 897, 940, 1001, 1004, 1014, 1091
GsuI CTGGAG 3 cut(s) 591, 693, 859
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 7 cut(s) 119, 180, 402, 555, 600, 709, 830
HapII CCGG 2 cut(s) 552, 786
HgaI GACGC 5 cut(s) 160, 799, 859, 1096, 1186
HhaI GCGC 3 cut(s) 31, 451, 795
Hin1I GRCGYC 1 cut(s) 870
Hin6I GCGC 3 cut(s) 29, 449, 793
HinP1I GCGC 3 cut(s) 29, 449, 793
HindIII AAGCTT 3 cut(s) 40, 583, 1150
HinfI GANTC 5 cut(s) 277, 664, 881, 947, 956
HpaII CCGG 2 cut(s) 552, 786
HphI GGTGA 8 cut(s) 80, 230, 269, 610, 673, 723, 751, 1030
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 8 cut(s) 310, 365, 468, 481, 627, 750, 946, 1263
Hpy188III TCNNGA 5 cut(s) 209, 743, 916, 1156, 1287
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 5 cut(s) 179, 392, 590, 970, 1085
HpyCH4III ACNGT 2 cut(s) 271, 763
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 2 cut(s) 737, 1055
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 455, 575, 827
HpyF3I CTNAG 4 cut(s) 38, 307, 432, 480
HpySE526I ACGT 1 cut(s) 561
Hsp92I GRCGYC 1 cut(s) 870
HspAI GCGC 3 cut(s) 29, 449, 793
KspI CCGCGG 1 cut(s) 96
Kzo9I GATC 4 cut(s) 476, 739, 745, 903
LmnI GCTCC 2 cut(s) 97, 337
Lsp1109I GCAGC 5 cut(s) 433, 883, 951, 990, 1102
LweI GCATC 3 cut(s) 565, 808, 1120
MaeI CTAG 1 cut(s) 809
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 5 cut(s) 218, 391, 404, 536, 616
MalI GATC 4 cut(s) 478, 741, 747, 905
MboI GATC 4 cut(s) 476, 739, 745, 903
MboII GAAGA 8 cut(s) 76, 79, 134, 159, 162, 1136, 1200, 1276
MflI RGATCY 2 cut(s) 476, 903
MhlI GDGCHC 5 cut(s) 342, 486, 808, 858, 1167
MlsI TGGCCA 3 cut(s) 180, 709, 830
MluCI AATT 1 cut(s) 933
MluNI TGGCCA 3 cut(s) 180, 709, 830
Mox20I TGGCCA 3 cut(s) 180, 709, 830
MscI TGGCCA 3 cut(s) 180, 709, 830
MseI TTAA 3 cut(s) 204, 315, 1245
MslI CAYNNNNRTG 3 cut(s) 272, 491, 1226
Msp20I TGGCCA 3 cut(s) 180, 709, 830
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 2 cut(s) 552, 786
MspR9I CCNGG 4 cut(s) 282, 787, 877, 1059
MvaI CCWGG 3 cut(s) 282, 877, 1059
MvnI CGCG 3 cut(s) 95, 793, 1180
MwoI GCNNNNNNNGC 4 cut(s) 186, 455, 575, 827
NciI CCSGG 1 cut(s) 787
NcoI CCATGG 1 cut(s) 214
NdeII GATC 4 cut(s) 476, 739, 745, 903
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 4 cut(s) 218, 391, 404, 616
NspI RCATGY 1 cut(s) 1231
OliI CACNNNNGTG 1 cut(s) 272
PaeI GCATGC 1 cut(s) 1231
PagI TCATGA 3 cut(s) 742, 915, 1286
PaqCI CACCTGC 1 cut(s) 742
PfeI GAWTC 5 cut(s) 277, 664, 881, 947, 956
PflMI CCANNNNNTGG 1 cut(s) 985
PkrI GCNGC 7 cut(s) 448, 898, 941, 1002, 1005, 1015, 1092
PshBI ATTAAT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 280, 875, 1057
PspEI GGTNACC 2 cut(s) 218, 616
PspGI CCWGG 3 cut(s) 280, 875, 1057
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 3 cut(s) 107, 211, 599
PstI CTGCAG 1 cut(s) 739
PsuI RGATCY 2 cut(s) 476, 903
RsaI GTAC 2 cut(s) 560, 687
RsaNI GTAC 2 cut(s) 559, 686
RseI CAYNNNNRTG 3 cut(s) 272, 491, 1226
SacI GAGCTC 1 cut(s) 858
SacII CCGCGG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 204, 315, 1245
SatI GCNGC 7 cut(s) 447, 897, 940, 1001, 1004, 1014, 1091
Sau3AI GATC 4 cut(s) 476, 739, 745, 903
Sau96I GGNCC 3 cut(s) 107, 211, 599
ScrFI CCNGG 4 cut(s) 282, 787, 877, 1059
SduI GDGCHC 5 cut(s) 342, 486, 808, 858, 1167
SfaNI GCATC 3 cut(s) 565, 808, 1120
SfcI CTRYAG 2 cut(s) 501, 735
Sfr303I CCGCGG 1 cut(s) 96
SgrBI CCGCGG 1 cut(s) 96
SinI GGWCC 2 cut(s) 107, 211
SmiMI CAYNNNNRTG 3 cut(s) 272, 491, 1226
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 1231
Sse9I AATT 1 cut(s) 933
SsiI CCGC 6 cut(s) 93, 95, 1000, 1013, 1016, 1219
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 4 cut(s) 280, 785, 875, 1057
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 271, 763
TaiI ACGT 1 cut(s) 564
TaqI TCGA 3 cut(s) 63, 667, 892
TasI AATT 1 cut(s) 933
TauI GCSGC 2 cut(s) 1003, 1016
TfiI GAWTC 5 cut(s) 277, 664, 881, 947, 956
Tru1I TTAA 3 cut(s) 204, 315, 1245
Tru9I TTAA 3 cut(s) 204, 315, 1245
TscAI CASTG 2 cut(s) 400, 781
TseFI GTSAC 4 cut(s) 218, 391, 404, 616
TseI GCWGC 5 cut(s) 446, 896, 939, 1003, 1090
Tsp45I GTSAC 4 cut(s) 218, 391, 404, 616
TspDTI ATGAA 3 cut(s) 249, 417, 838
TspRI CASTG 2 cut(s) 400, 781
Van91I CCANNNNNTGG 1 cut(s) 985
VpaK11BI GGWCC 2 cut(s) 107, 211
VspI ATTAAT 1 cut(s) 204
XagI CCTNNNNNAGG 1 cut(s) 1079
XceI RCATGY 1 cut(s) 1231
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.