FvH4_5g05900

Tryptophan aminotransferase-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
3473527 .. 3476579
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05900.t1

Sequence Viewer

Length: 1278 bp
ATGGCAAACTTCTTTAGCATTTTCACAATCACAAATTTGCTTATTCTGTCTCTCGCCCTCAATCTAAGCTTGGTGATGAGGGTGTATCTCAATAGTGAGAAACATGGCCAACCAAAAGTTGTGGACGTTGAAGGTCCCGCAACCCAGAGGACACTCCTCTCTGTTTCTTCTTCATCTGGTGAAGAAGATATAGATAAGGTCATCAACCTCAACCATGGTGACCCAACAATGTATGAGAAGTACTGGATGATGATGGGCGACAAAACCACAGTGGTGATTCCGGGGTGGCACTCGATGAGCTACTTCTCGGATGTGAAAAACCTCTGTTGGTTTTTGGAGCCCCAACTGGCCATGCAGATTATAAAACTACACAAAGCTGTGGGGAATGCCGTCACTGAAGGGCGTCATATTGTGATTGGGACAGGCTCGTCTCAGCTCATTATTGCTGCGCTTTTCGCTCTTTCTCCGGCAGATGGATCTGAGCCCATGAGTGTGGTATCTACAGCTCCATTCTACTCGTCTTACCCGGTGATGAGTACATACCTCAAGTCGGGACTGTTCAACTGGGCCGGAGATGCGAGAAGCTTCAACAAGGAAGGACCCTACATTGAGTTCATCACATCTCCGAATAACCCCGACGGGTTTTTCAGGTCCTCCACCGTGAATCGAACCGGAGGTATGTTGGTGCATGATTTGGCCTACTACTGGCCACAATATACACCCATTTCCTTACCGGCAGACCATGATCTGTCATTGTTCACCTTCAGCAAAGCCAATGGTCATGCTGGGACGCGCATTGGGTGGGCTCTGGTGAAGGACGAAGAAGTTGCCAAGAGAATGATCAAGTTCATAGAGCTAAACACCATTGGCGTGTCCAGGGATTCACAGCTCCGAGCTGCCAAGATCTTGGAAGTGATGACCAACACCAGTGTTGACAGCTCAGGTGAATCCTTCTTCGACATAAGCCACCACCTCATGGCAGAGAGGTGGCGGCTGCTCCGAGCGGCGGTGAACAATAGCAGAAGGTTTAGTCTGCCTGAATTTGCACCGGGGTTCTGCCATTTCTTTCAAAAGGAGACAATGCCTCAACCTGCCTTCGCATGGCTTAAGTGTGAGGACGATGAAGTGGAGGATTGTGAAAGCTTCCTCAGAGGGCAGAAGATTTTGACCCGGGGAGGAAGTAAATTTGGGGTTAGCGCAAAATATGTTCGAATAAGTATGGTGGATAAGGATATCAACTTCAGTTTGTTTCTGAAGCGTTTGTCCAAGCTCCAGTAA

Protein Analysis

426

Amino Acids

47.66

Weight (kDa)

6.84

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 68 - 424 1.3e-146 Allinase
Aminotran_1_2 PF00155 114 - 408 2e-09 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AasI GACNNNNNNGTC 1 cut(s) 427
Acc36I ACCTGC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 976
AccBSI CCGCTC 1 cut(s) 1004
AccII CGCG 1 cut(s) 793
AciI CCGC 4 cut(s) 138, 991, 1004, 1007
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 3 cut(s) 106, 348, 707
AcsI RAATTY 3 cut(s) 34, 1040, 1184
AcuI CTGAAG 4 cut(s) 417, 748, 1225, 1274
AcyI GRCGYC 1 cut(s) 403
AfaI GTAC 2 cut(s) 242, 538
AfiI CCNNNNNNNGG 6 cut(s) 473, 550, 705, 976, 1006, 1101
AflII CTTAAG 1 cut(s) 1106
AgsI TTSAA 4 cut(s) 131, 562, 589, 1070
AjnI CCWGG 1 cut(s) 875
AleI CACNNNNGTG 1 cut(s) 272
Alw26I GTCTC 3 cut(s) 54, 435, 1070
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 1170
AoxI GGCC 5 cut(s) 106, 348, 567, 696, 707
ApeKI GCWGC 3 cut(s) 446, 896, 994
ApoI RAATTY 3 cut(s) 34, 1040, 1184
AspLEI GCGC 3 cut(s) 451, 795, 1199
AspS9I GGNCC 4 cut(s) 134, 567, 599, 651
AsuC2I CCSGG 5 cut(s) 282, 527, 1050, 1171, 1172
AsuHPI GGTGA 9 cut(s) 85, 191, 230, 286, 541, 751, 823, 956, 1021
AsuII TTCGAA 1 cut(s) 1210
AvaI CYCGRG 1 cut(s) 1170
AvaII GGWCC 3 cut(s) 134, 599, 651
BalI TGGCCA 3 cut(s) 108, 350, 709
BanII GRGCYC 3 cut(s) 342, 486, 808
BbvI GCAGC 3 cut(s) 433, 883, 981
BccI CCATC 2 cut(s) 247, 467
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 877
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 5 cut(s) 282, 527, 1050, 1171, 1172
BcoDI GTCTC 3 cut(s) 54, 435, 1070
BfmI CTRYAG 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 1106
BfuAI ACCTGC 1 cut(s) 1099
BglII AGATCT 1 cut(s) 903
BisI GCNGC 5 cut(s) 447, 897, 992, 995, 1005
BlsI GCNGC 5 cut(s) 448, 898, 993, 996, 1006
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 6 cut(s) 282, 527, 877, 1050, 1171, 1172
Bme18I GGWCC 3 cut(s) 134, 599, 651
BmeT110I CYCGRG 1 cut(s) 1170
BmgT120I GGNCC 4 cut(s) 134, 567, 599, 651
BmiI GGNNCC 3 cut(s) 136, 339, 601
BmrFI CCNGG 6 cut(s) 282, 527, 877, 1050, 1171, 1172
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 1256
Bpu10I CCTNAGC 1 cut(s) 940
Bpu14I TTCGAA 1 cut(s) 1210
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 5 cut(s) 282, 527, 1050, 1171, 1172
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 6 cut(s) 214, 281, 876, 1049, 1170, 1171
BsaWI WCCGGW 1 cut(s) 671
Bsc4I CCNNNNNNNGG 6 cut(s) 473, 550, 705, 976, 1006, 1101
Bse118I RCCGGY 1 cut(s) 733
Bse1I ACTGG 6 cut(s) 248, 351, 569, 710, 927, 1273
BseBI CCWGG 1 cut(s) 877
BseDI CCNNGG 6 cut(s) 214, 281, 876, 1049, 1170, 1171
BseGI GGATG 2 cut(s) 252, 316
BseLI CCNNNNNNNGG 6 cut(s) 473, 550, 705, 976, 1006, 1101
BseMII CTCAG 4 cut(s) 446, 471, 954, 1162
BseNI ACTGG 6 cut(s) 248, 351, 569, 710, 927, 1273
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 3 cut(s) 433, 883, 981
BseYI CCCAGC 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 793
BshFI GGCC 5 cut(s) 108, 350, 569, 698, 709
BsiHKCI CYCGRG 1 cut(s) 1170
BsiSI CCGG 8 cut(s) 281, 467, 527, 570, 672, 734, 1049, 1171
BslFI GGGAC 4 cut(s) 120, 433, 567, 802
BslI CCNNNNNNNGG 6 cut(s) 473, 550, 705, 976, 1006, 1101
BsmAI GTCTC 3 cut(s) 54, 435, 1070
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 4 cut(s) 120, 433, 567, 802
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 5 cut(s) 108, 350, 569, 698, 709
BsoBI CYCGRG 1 cut(s) 1170
Bsp119I TTCGAA 1 cut(s) 1210
Bsp1286I GDGCHC 3 cut(s) 342, 486, 808
Bsp143I GATC 4 cut(s) 476, 745, 840, 903
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 4 cut(s) 138, 991, 1004, 1007
BspANI GGCC 5 cut(s) 108, 350, 569, 698, 709
BspCNI CTCAG 4 cut(s) 445, 472, 953, 1161
BspFNI CGCG 1 cut(s) 793
BspLI GGNNCC 3 cut(s) 136, 339, 601
BspMI ACCTGC 1 cut(s) 1099
BspPI GGATC 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 1210
BspTI CTTAAG 1 cut(s) 1106
BsrBI CCGCTC 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 733
BsrI ACTGG 6 cut(s) 248, 351, 569, 710, 927, 1273
BssAI RCCGGY 1 cut(s) 733
BssECI CCNNGG 6 cut(s) 214, 281, 876, 1049, 1170, 1171
BssMI GATC 4 cut(s) 476, 745, 840, 903
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 877
Bst4CI ACNGT 3 cut(s) 271, 558, 661
BstACI GRCGYC 1 cut(s) 403
BstAFI CTTAAG 1 cut(s) 1106
BstBI TTCGAA 1 cut(s) 1210
BstDEI CTNAG 5 cut(s) 65, 432, 480, 940, 1148
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 252, 316
BstFNI CGCG 1 cut(s) 793
BstHHI GCGC 3 cut(s) 451, 795, 1199
BstKTI GATC 4 cut(s) 479, 748, 843, 906
BstMAI GTCTC 3 cut(s) 54, 435, 1070
BstMBI GATC 4 cut(s) 476, 745, 840, 903
BstMWI GCNNNNNNNGC 2 cut(s) 455, 575
BstNI CCWGG 1 cut(s) 877
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 6 cut(s) 280, 525, 875, 1048, 1169, 1170
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 3 cut(s) 433, 883, 981
BstX2I RGATCY 2 cut(s) 476, 903
BstXI CCANNNNNNTGG 2 cut(s) 493, 907
BstYI RGATCY 2 cut(s) 476, 903
BsuRI GGCC 5 cut(s) 108, 350, 569, 698, 709
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 2 cut(s) 252, 316
BtsIMutI CAGTG 3 cut(s) 276, 393, 934
BveI ACCTGC 1 cut(s) 1099
CfoI GCGC 3 cut(s) 451, 795, 1199
Cfr10I RCCGGY 1 cut(s) 733
Cfr13I GGNCC 4 cut(s) 134, 567, 599, 651
Cfr9I CCCGGG 1 cut(s) 1170
CseI GACGC 2 cut(s) 392, 799
Csp6I GTAC 2 cut(s) 241, 537
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 9 cut(s) 104, 215, 352, 487, 689, 743, 782, 976, 1101
CviQI GTAC 2 cut(s) 241, 537
DdeI CTNAG 5 cut(s) 65, 432, 480, 940, 1148
DpnI GATC 4 cut(s) 478, 747, 842, 905
DpnII GATC 4 cut(s) 476, 745, 840, 903
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 3 cut(s) 106, 348, 707
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 3 cut(s) 342, 486, 808
Eco32I GATATC 1 cut(s) 1234
Eco47I GGWCC 3 cut(s) 134, 599, 651
Eco57I CTGAAG 4 cut(s) 417, 748, 1225, 1274
Eco88I CYCGRG 1 cut(s) 1170
Eco91I GGTNACC 1 cut(s) 218
EcoO109I RGGNCCY 3 cut(s) 134, 599, 651
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 875
EcoRV GATATC 1 cut(s) 1234
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 3 cut(s) 342, 486, 808
ErhI CCWWGG 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 9 cut(s) 107, 218, 355, 490, 692, 746, 785, 979, 1104
FaqI GGGAC 4 cut(s) 120, 433, 567, 802
FatI CATG 9 cut(s) 103, 214, 351, 486, 688, 742, 781, 975, 1100
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 5 cut(s) 447, 897, 992, 995, 1005
FokI GGATG 2 cut(s) 259, 323
FriOI GRGCYC 3 cut(s) 342, 486, 808
Fsp4HI GCNGC 5 cut(s) 447, 897, 992, 995, 1005
GlaI GCGC 3 cut(s) 450, 794, 1198
GluI GCNGC 5 cut(s) 447, 897, 992, 995, 1005
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 1256
HaeIII GGCC 5 cut(s) 108, 350, 569, 698, 709
HapII CCGG 8 cut(s) 281, 467, 527, 570, 672, 734, 1049, 1171
HgaI GACGC 2 cut(s) 392, 799
HhaI GCGC 3 cut(s) 451, 795, 1199
Hin1I GRCGYC 1 cut(s) 403
Hin1II CATG 9 cut(s) 107, 218, 355, 490, 692, 746, 785, 979, 1104
Hin6I GCGC 3 cut(s) 449, 793, 1197
HinP1I GCGC 3 cut(s) 449, 793, 1197
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HindIII AAGCTT 3 cut(s) 67, 583, 1141
HinfI GANTC 4 cut(s) 277, 664, 881, 947
HpaII CCGG 8 cut(s) 281, 467, 527, 570, 672, 734, 1049, 1171
HphI GGTGA 9 cut(s) 85, 191, 230, 286, 541, 751, 823, 956, 1021
Hpy166II GTNNAC 4 cut(s) 124, 759, 934, 1012
Hpy188I TCNGA 7 cut(s) 310, 481, 627, 893, 1001, 1151, 1254
Hpy188III TCNNGA 1 cut(s) 552
Hpy8I GTNNAC 4 cut(s) 124, 759, 934, 1012
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 8 cut(s) 125, 392, 590, 772, 808, 961, 1017, 1105
HpyCH4III ACNGT 3 cut(s) 271, 558, 661
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 355, 688, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 575
HpyF3I CTNAG 5 cut(s) 65, 432, 480, 940, 1148
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 403
Hsp92II CATG 9 cut(s) 107, 218, 355, 490, 692, 746, 785, 979, 1104
HspAI GCGC 3 cut(s) 449, 793, 1197
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 4 cut(s) 476, 745, 840, 903
LmnI GCTCC 5 cut(s) 337, 511, 894, 1002, 1275
Lsp1109I GCAGC 3 cut(s) 433, 883, 981
LweI GCATC 1 cut(s) 565
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 218, 391
MalI GATC 4 cut(s) 478, 747, 842, 905
MbiI CCGCTC 1 cut(s) 1004
MboI GATC 4 cut(s) 476, 745, 840, 903
MboII GAAGA 7 cut(s) 159, 162, 194, 197, 833, 946, 1171
MflI RGATCY 2 cut(s) 476, 903
MhlI GDGCHC 3 cut(s) 342, 486, 808
MlsI TGGCCA 3 cut(s) 108, 350, 709
MluCI AATT 3 cut(s) 34, 1040, 1184
MluNI TGGCCA 3 cut(s) 108, 350, 709
Mox20I TGGCCA 3 cut(s) 108, 350, 709
MscI TGGCCA 3 cut(s) 108, 350, 709
MseI TTAA 1 cut(s) 1107
MslI CAYNNNNRTG 3 cut(s) 272, 491, 869
Msp20I TGGCCA 3 cut(s) 108, 350, 709
MspCI CTTAAG 1 cut(s) 1106
MspI CCGG 8 cut(s) 281, 467, 527, 570, 672, 734, 1049, 1171
MspR9I CCNGG 6 cut(s) 282, 527, 877, 1050, 1171, 1172
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 877
MvnI CGCG 1 cut(s) 793
MwoI GCNNNNNNNGC 2 cut(s) 455, 575
NciI CCSGG 5 cut(s) 282, 527, 1050, 1171, 1172
NcoI CCATGG 1 cut(s) 214
NdeII GATC 4 cut(s) 476, 745, 840, 903
NlaIII CATG 9 cut(s) 107, 218, 355, 490, 692, 746, 785, 979, 1104
NlaIV GGNNCC 3 cut(s) 136, 339, 601
NmuCI GTSAC 2 cut(s) 218, 391
NspV TTCGAA 1 cut(s) 1210
OliI CACNNNNGTG 1 cut(s) 272
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 4 cut(s) 277, 664, 881, 947
PflMI CCANNNNNTGG 1 cut(s) 976
PkrI GCNGC 5 cut(s) 448, 898, 993, 996, 1006
PpuMI RGGWCCY 3 cut(s) 134, 599, 651
PsiI TTATAA 1 cut(s) 362
Psp5II RGGWCCY 3 cut(s) 134, 599, 651
Psp6I CCWGG 1 cut(s) 875
PspEI GGTNACC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 1 cut(s) 875
PspN4I GGNNCC 3 cut(s) 136, 339, 601
PspPI GGNCC 4 cut(s) 134, 567, 599, 651
PspPPI RGGWCCY 3 cut(s) 134, 599, 651
PsuI RGATCY 2 cut(s) 476, 903
RsaI GTAC 2 cut(s) 242, 538
RsaNI GTAC 2 cut(s) 241, 537
RseI CAYNNNNRTG 3 cut(s) 272, 491, 869
SaqAI TTAA 1 cut(s) 1107
SatI GCNGC 5 cut(s) 447, 897, 992, 995, 1005
Sau3AI GATC 4 cut(s) 476, 745, 840, 903
Sau96I GGNCC 4 cut(s) 134, 567, 599, 651
ScaI AGTACT 1 cut(s) 242
ScrFI CCNGG 6 cut(s) 282, 527, 877, 1050, 1171, 1172
SduI GDGCHC 3 cut(s) 342, 486, 808
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 1210
SinI GGWCC 3 cut(s) 134, 599, 651
SmaI CCCGGG 1 cut(s) 1172
SmiMI CAYNNNNRTG 3 cut(s) 272, 491, 869
SmlI CTYRAG 2 cut(s) 545, 1106
SmoI CTYRAG 2 cut(s) 545, 1106
Sse9I AATT 3 cut(s) 34, 1040, 1184
SsiI CCGC 4 cut(s) 138, 991, 1004, 1007
StyD4I CCNGG 6 cut(s) 280, 525, 875, 1048, 1169, 1170
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 271, 558, 661
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 293, 667, 957, 1210
TasI AATT 3 cut(s) 34, 1040, 1184
TatI WGTACW 2 cut(s) 240, 536
TauI GCSGC 2 cut(s) 994, 1007
TfiI GAWTC 4 cut(s) 277, 664, 881, 947
Tru1I TTAA 1 cut(s) 1107
Tru9I TTAA 1 cut(s) 1107
TscAI CASTG 3 cut(s) 276, 400, 934
TseFI GTSAC 2 cut(s) 218, 391
TseI GCWGC 3 cut(s) 446, 896, 994
Tsp45I GTSAC 2 cut(s) 218, 391
TspDTI ATGAA 4 cut(s) 162, 604, 838, 1137
TspMI CCCGGG 1 cut(s) 1170
TspRI CASTG 3 cut(s) 276, 400, 934
Van91I CCANNNNNTGG 1 cut(s) 976
Vha464I CTTAAG 1 cut(s) 1106
VpaK11BI GGWCC 3 cut(s) 134, 599, 651
XapI RAATTY 3 cut(s) 34, 1040, 1184
XmaI CCCGGG 1 cut(s) 1170
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.