Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009856

Physical Location & Seq

Genomic Coordinates Forward (+)

12900430 .. 12901577

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGATACAGCTAGAGGAACCCATCACGATATCATCGGCAGAGACCAGTACCCGATGATGGGCCGAGACCGAGACCAGTACCAGATGTCCGGACGAGGATCTGACTACTCCAAGTCTAGGCAGATTGCTAAAGCTGCAACTGCTGTCACAGCTGGTGGTTCCCTCCTTGTTCTCTCCAGCCTTACCCTTGTTGGAACTGTCATAGCTTTGACTGTTGCAACACCTCTGCTCGTTATCTTCAGCCCAATCCTTGTCCCGGCTCTCATCACAGTTGCACTCCTCATCACCGGTTTTCTTTCCTCTGGAGGGTTTGGCATTGCCGCTATAACCGTTTTCTCTTGGATTTACAAGTACGCAACGGGAGAGCACCCACAGGGATCAGACAAGTTGGACAGTGCAAGGATGAAGTTGGGAAGCAAAGCTCAGGATCTGAAAGACAGAGCTCAGTACTACGGACAGCAACATACTGGTGGGGAACATGACCGTGACCGTACTCGTGGTGGCCAGCACACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0016020 GO:0019915 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

173

Amino Acids

18.57

Weight (kDa)

9.43

Isoelectric Point (pI)

17.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	41 - 153	4.6e-46	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25140 AT5G51210
fragaria_vesca	FvH4_7g26900
malus_domestica	MD01G1176900.v1.1 MD04G1057600.v1.1 MD06G1051200.v1.1 MD07G1248300.v1.1
prunus_persica	Prupe.2G272200_v2.0.a1
pyrus_communis	pycom04g05120
rosa_chinensis	RchiOBHm_Chr1g0373571
rosa_laevigata	RLG00000026814
rosa_multiflora	Rmu_sc0002860.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252900 Rroxscaffold_4G00284130
rosa_rugosa	Rorug01G0378400 Rorug07G0085300
rosa_samantha	Rh1AG387800 Rh1BG352100 Rh1CG364800 Rh1DG382500
rosa_wichuraiana	Rw1G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	2 cut(s)	5, 324
AclWI	GGATC	3 cut(s)	109, 388, 438
AcoI	YGGCCR	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	5 cut(s)	53, 83, 356, 452, 496
AfiI	CCNNNNNNNGG	5 cut(s)	61, 62, 120, 259, 309
AgeI	ACCGGT	1 cut(s)	290
AluBI	AGCT	6 cut(s)	14, 137, 155, 209, 425, 446
AluI	AGCT	6 cut(s)	14, 137, 155, 209, 425, 446
Alw21I	GWGCWC	2 cut(s)	372, 448
Alw26I	GTCTC	3 cut(s)	39, 63, 69
AlwI	GGATC	3 cut(s)	109, 388, 438
AlwNI	CAGNNNCTG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	64, 505
ApeKI	GCWGC	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	372, 448
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	33, 55
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	3 cut(s)	39, 63, 69
BfaI	CTAG	2 cut(s)	15, 120
BisI	GCNGC	2 cut(s)	138, 324
BlsI	GCNGC	2 cut(s)	139, 325
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	22, 163
BmrFI	CCNGG	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	163, 327
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	260
BsaI	GGTCTC	3 cut(s)	39, 63, 69
BsaWI	WCCGGW	2 cut(s)	92, 290
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 62, 120, 259, 309
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	49, 79, 475
Bse3DI	GCAATG	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	92
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	5 cut(s)	61, 62, 120, 259, 309
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	440, 461
BseNI	ACTGG	3 cut(s)	49, 79, 475
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	2 cut(s)	66, 507
BshTI	ACCGGT	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	372, 448
BsiSI	CCGG	3 cut(s)	93, 260, 291
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	5 cut(s)	61, 62, 120, 259, 309
BsmAI	GTCTC	3 cut(s)	39, 63, 69
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	66, 507
Bso31I	GGTCTC	3 cut(s)	39, 63, 69
Bsp1286I	GDGCHC	2 cut(s)	372, 448
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	101, 380, 430
BspACI	CCGC	2 cut(s)	5, 324
BspANI	GGCC	2 cut(s)	66, 507
BspCNI	CTCAG	2 cut(s)	439, 460
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	22, 163
BspPI	GGATC	3 cut(s)	109, 388, 438
BspTNI	GGTCTC	3 cut(s)	39, 63, 69
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	49, 79, 475
BssAI	RCCGGY	1 cut(s)	290
BssMI	GATC	3 cut(s)	101, 380, 430
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst4CI	ACNGT	7 cut(s)	202, 217, 274, 334, 398, 488, 494
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	426, 447
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	3 cut(s)	104, 383, 433
BstMAI	GTCTC	3 cut(s)	39, 63, 69
BstMBI	GATC	3 cut(s)	101, 380, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 137, 143, 152
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	101, 430
BstYI	RGATCY	2 cut(s)	101, 430
BsuRI	GGCC	2 cut(s)	66, 507
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	5 cut(s)	52, 82, 355, 451, 495
CspAI	ACCGGT	1 cut(s)	290
CviAII	CATG	1 cut(s)	482
CviQI	GTAC	5 cut(s)	52, 82, 355, 451, 495
DdeI	CTNAG	2 cut(s)	426, 447
DpnI	GATC	3 cut(s)	103, 382, 432
DpnII	GATC	3 cut(s)	101, 380, 430
EaeI	YGGCCR	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	3 cut(s)	39, 63, 69
Eco32I	GATATC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	1 cut(s)	485
FaiI	YATR	4 cut(s)	206, 329, 468, 483
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	138, 324
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	138, 324
FspBI	CTAG	2 cut(s)	15, 120
GluI	GCNGC	2 cut(s)	138, 324
GsuI	CTGGAG	2 cut(s)	163, 327
HaeIII	GGCC	2 cut(s)	66, 507
HapII	CCGG	3 cut(s)	93, 260, 291
Hin1II	CATG	1 cut(s)	485
HpaII	CCGG	3 cut(s)	93, 260, 291
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	106, 385, 435
Hpy188III	TCNNGA	4 cut(s)	29, 93, 306, 428
HpyCH4III	ACNGT	7 cut(s)	202, 217, 274, 334, 398, 488, 494
HpyCH4V	TGCA	4 cut(s)	140, 221, 278, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 137, 143, 152
HpyF3I	CTNAG	2 cut(s)	426, 447
Hsp92II	CATG	1 cut(s)	485
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	101, 380, 430
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	15, 120
MaeIII	GTNAC	2 cut(s)	148, 488
MalI	GATC	3 cut(s)	103, 382, 432
MboI	GATC	3 cut(s)	101, 380, 430
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	2 cut(s)	101, 430
MhlI	GDGCHC	2 cut(s)	372, 448
MlsI	TGGCCA	1 cut(s)	507
MluNI	TGGCCA	1 cut(s)	507
MmeI	TCCRAC	2 cut(s)	175, 372
MnlI	CCTC	7 cut(s)	11, 92, 176, 237, 293, 302, 313
Mox20I	TGGCCA	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	2 cut(s)	471, 486
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	93, 260, 291
MspR9I	CCNGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	11, 137, 143, 152
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	3 cut(s)	101, 380, 430
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	2 cut(s)	22, 163
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	148, 488
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	139, 325
Psp124BI	GAGCTC	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	22, 163
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	101, 430
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	5 cut(s)	53, 83, 356, 452, 496
RsaNI	GTAC	5 cut(s)	52, 82, 355, 451, 495
RseI	CAYNNNNRTG	2 cut(s)	471, 486
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	2 cut(s)	138, 324
Sau3AI	GATC	3 cut(s)	101, 380, 430
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	372, 448
SetI	ASST	7 cut(s)	16, 139, 157, 211, 229, 427, 448
SmiMI	CAYNNNNRTG	2 cut(s)	471, 486
SsiI	CCGC	2 cut(s)	5, 324
SspMI	CTAG	2 cut(s)	15, 120
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	7 cut(s)	202, 217, 274, 334, 398, 488, 494
TaqII	GACCGA	1 cut(s)	87
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	148, 488
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	2 cut(s)	148, 488
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	403
XspI	CTAG	2 cut(s)	15, 120
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.