Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009856

Physical Location & Seq

Genomic Coordinates Reverse (-)

60357821 .. 60358294

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG382500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGAGCACCACCAGCAATACCTGCAGTCCCATCCCTTTCAGGGACAACAAGGCATGCAGCACCAACAAACTAAGTCCTACCAGGTCGCCAAGGCCGCCACCGCAGTCACCGCCGGGGGTTCACTCCTCGTCCTCTCCGGTTTGGTCCTCGCCGGCACAGTCATATGCTTGACCATAGCCACTCCTCTCCTCGTGATCTTCAGTCCGGTCCTCGTCCCGGCTGTGATCACCGTGGCGCTCATAATGACTGGCTTCTTGGCCTCCGGCGGGTTCGGCGTGGCGGCCATCAGTGTCTTGTCGTGGATTTACAAGTACGTGACAGGAAGCCAACCTCCCGGCGCGGAACAGCTCGACTCGGCACGACACAAGCTGGCGGGGAAGGCCAGGGACATGAAGGATAGAGCTGAGCAGTTTGGGCAACAGCATATGGGCTCTGACCGCGGTCAGCACGGTCAACATCAGAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0016020 GO:0019915 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

157

Amino Acids

16.65

Weight (kDa)

9.21

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	29 - 140	1e-47	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25140 AT5G51210
fragaria_vesca	FvH4_7g26900
malus_domestica	MD01G1176900.v1.1 MD04G1057600.v1.1 MD06G1051200.v1.1 MD07G1248300.v1.1
prunus_persica	Prupe.2G272200_v2.0.a1
pyrus_communis	pycom04g05120
rosa_chinensis	RchiOBHm_Chr1g0373571
rosa_laevigata	RLG00000026814
rosa_multiflora	Rmu_sc0002860.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252900 Rroxscaffold_4G00284130
rosa_rugosa	Rorug01G0378400 Rorug07G0085300
rosa_samantha	Rh1AG387800 Rh1BG352100 Rh1CG364800 Rh1DG382500
rosa_wichuraiana	Rw1G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AccII	CGCG	2 cut(s)	344, 444
AciI	CCGC	9 cut(s)	99, 105, 114, 270, 284, 344, 377, 442, 444
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	44, 220, 270
AjnI	CCWGG	2 cut(s)	84, 386
AluBI	AGCT	3 cut(s)	352, 373, 407
AluI	AGCT	3 cut(s)	352, 373, 407
Alw21I	GWGCWC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	96, 261, 285, 384
ApeKI	GCWGC	1 cut(s)	61
AspLEI	GCGC	2 cut(s)	241, 344
AspS9I	GGNCC	2 cut(s)	148, 211
AsuC2I	CCSGG	3 cut(s)	118, 221, 339
AsuHPI	GGTGA	2 cut(s)	103, 223
AvaII	GGWCC	2 cut(s)	148, 211
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	42, 296
BciT130I	CCWGG	2 cut(s)	86, 388
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	3 cut(s)	118, 221, 339
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	62, 99, 285
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	63, 100, 286
Bme1390I	CCNGG	5 cut(s)	86, 118, 221, 339, 388
Bme18I	GGWCC	2 cut(s)	148, 211
BmgT120I	GGNCC	2 cut(s)	148, 211
BmrFI	CCNGG	5 cut(s)	86, 118, 221, 339, 388
BoxI	GACNNNNGTC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuMI	CCSGG	3 cut(s)	118, 221, 339
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	5 cut(s)	93, 117, 234, 387, 442
BsaWI	WCCGGW	2 cut(s)	140, 208
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 220, 270
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	86, 388
BseDI	CCNNGG	5 cut(s)	93, 117, 234, 387, 442
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	3 cut(s)	44, 220, 270
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	3 cut(s)	119, 177, 182
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	2 cut(s)	344, 444
BshFI	GGCC	4 cut(s)	98, 263, 287, 386
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	7 cut(s)	117, 141, 156, 209, 221, 267, 339
BslFI	GGGAC	4 cut(s)	16, 60, 203, 404
BslI	CCNNNNNNNGG	3 cut(s)	44, 220, 270
BsmFI	GGGAC	4 cut(s)	16, 60, 203, 404
BsnI	GGCC	4 cut(s)	98, 263, 287, 386
Bsp1286I	GDGCHC	2 cut(s)	12, 437
Bsp143I	GATC	2 cut(s)	198, 228
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	9 cut(s)	99, 105, 114, 270, 284, 344, 377, 442, 444
BspANI	GGCC	4 cut(s)	98, 263, 287, 386
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	344, 444
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	5 cut(s)	93, 117, 234, 387, 442
BssMI	GATC	2 cut(s)	198, 228
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	86, 388
Bst4CI	ACNGT	3 cut(s)	163, 235, 455
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	59, 157, 375
BstDEI	CTNAG	2 cut(s)	75, 408
BstDSI	CCRYGG	2 cut(s)	234, 442
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	2 cut(s)	344, 444
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	241, 344
BstKTI	GATC	2 cut(s)	201, 231
BstMBI	GATC	2 cut(s)	198, 228
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 418, 441
BstNI	CCWGG	2 cut(s)	86, 388
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	5 cut(s)	84, 116, 219, 337, 386
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	2 cut(s)	344, 444
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	4 cut(s)	98, 263, 287, 386
BtgI	CCRYGG	2 cut(s)	234, 442
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	59, 157, 375
CfoI	GCGC	2 cut(s)	241, 344
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	148, 211
Cfr42I	CCGCGG	1 cut(s)	445
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	58, 394
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	75, 408
DpnI	GATC	2 cut(s)	200, 230
DpnII	GATC	2 cut(s)	198, 228
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	148, 211
Eco57I	CTGAAG	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	84, 386
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	61, 397
FaiI	YATR	8 cut(s)	59, 167, 169, 179, 245, 395, 429, 431
FaqI	GGGAC	4 cut(s)	16, 60, 203, 404
FatI	CATG	2 cut(s)	57, 393
FauI	CCCGC	2 cut(s)	263, 370
FauNDI	CATATG	2 cut(s)	167, 429
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	62, 99, 285
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	3 cut(s)	62, 99, 285
GlaI	GCGC	2 cut(s)	240, 343
GluI	GCNGC	3 cut(s)	62, 99, 285
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	4 cut(s)	98, 263, 287, 386
HapII	CCGG	7 cut(s)	117, 141, 156, 209, 221, 267, 339
HhaI	GCGC	2 cut(s)	241, 344
Hin1II	CATG	2 cut(s)	61, 397
Hin6I	GCGC	2 cut(s)	239, 342
HinP1I	GCGC	2 cut(s)	239, 342
HincII	GTYRAC	1 cut(s)	458
HindII	GTYRAC	1 cut(s)	458
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	7 cut(s)	117, 141, 156, 209, 221, 267, 339
HphI	GGTGA	2 cut(s)	103, 223
Hpy166II	GTNNAC	2 cut(s)	125, 458
Hpy188I	TCNGA	2 cut(s)	439, 465
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	125, 458
HpyAV	CCTTC	2 cut(s)	376, 391
HpyCH4III	ACNGT	3 cut(s)	163, 235, 455
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	28, 61
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 418, 441
HpyF3I	CTNAG	2 cut(s)	75, 408
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	61, 397
HspAI	GCGC	2 cut(s)	239, 342
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	228
KspI	CCGCGG	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	198, 228
Lsp1109I	GCAGC	1 cut(s)	73
MabI	ACCWGGT	1 cut(s)	84
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	109, 319
MalI	GATC	2 cut(s)	200, 230
MboI	GATC	2 cut(s)	198, 228
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	12, 437
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	8 cut(s)	140, 146, 161, 198, 203, 224, 274, 345
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	7 cut(s)	117, 141, 156, 209, 221, 267, 339
MspR9I	CCNGG	5 cut(s)	86, 118, 221, 339, 388
MvaI	CCWGG	2 cut(s)	86, 388
MvnI	CGCG	2 cut(s)	344, 444
MwoI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 418, 441
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	3 cut(s)	118, 221, 339
NdeI	CATATG	2 cut(s)	167, 429
NdeII	GATC	2 cut(s)	198, 228
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	61, 397
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	109, 319
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PdiI	GCCGGC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	63, 100, 286
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	319
PshAI	GACNNNNGTC	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	84, 386
PspGI	CCWGG	2 cut(s)	84, 386
PspPI	GGNCC	2 cut(s)	148, 211
PstI	CTGCAG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacII	CCGCGG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	3 cut(s)	62, 99, 285
Sau3AI	GATC	2 cut(s)	198, 228
Sau96I	GGNCC	2 cut(s)	148, 211
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	86, 118, 221, 339, 388
SduI	GDGCHC	2 cut(s)	12, 437
SetI	ASST	7 cut(s)	27, 90, 321, 337, 354, 375, 409
SexAI	ACCWGGT	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	445
SgrBI	CCGCGG	1 cut(s)	445
SinI	GGWCC	2 cut(s)	148, 211
SphI	GCATGC	1 cut(s)	61
SsiI	CCGC	9 cut(s)	99, 105, 114, 270, 284, 344, 377, 442, 444
StyD4I	CCNGG	5 cut(s)	84, 116, 219, 337, 386
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	163, 235, 455
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	354
TauI	GCSGC	2 cut(s)	101, 287
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	109, 319
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	2 cut(s)	109, 319
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	148, 211
XceI	RCATGY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.