MD04G1057600.v1.1

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0009856
Physical Location & Seq
Reverse (-)
7172625 .. 7172975
351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1057600.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGCTCGAAATCCAGAAAACCTCTCCTATCAATTGGCCAAGGCCTCCACTGCCATAACCTTTTCCGGGTCCCTCTCCGTCCTCTCCAGTTTGACACTCACTGCCGTTGTTATCGGTTTGGTGGCAGCAACACCGTTGCTGGTGATCTTCAGCCCGGTGTTGGTACCAGCCGGAGTTGCAATGCTTCTGCTGAATACTGGGCTTGTTATGTCGGGAGGGCTTGGCGCAACAGCGGCGATGGTGTTTTACTGGGTTTACAACTATGTGACAGGACAGCACCCGGTTGGTGCTGACAAACTGGATCAGCTGGCTTCAACATTGGCGAGCGGGGTTAGAAGCATCAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

117

Amino Acids

11.93

Weight (kDa)

9.22

Isoelectric Point (pI)

27.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 11 - 115 1.4e-32 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 327
AciI CCGC 2 cut(s) 233, 327
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 66, 160
AgsI TTSAA 1 cut(s) 315
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
AlwI GGATC 1 cut(s) 309
AoxI GGCC 2 cut(s) 36, 42
ApeKI GCWGC 1 cut(s) 125
Asp718I GGTACC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 3 cut(s) 67, 155, 281
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 232
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 3 cut(s) 67, 155, 281
BisI GCNGC 2 cut(s) 126, 234
BlsI GCNGC 2 cut(s) 127, 235
Bme1390I CCNGG 3 cut(s) 67, 155, 281
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 70, 71, 165
BmrFI CCNGG 3 cut(s) 67, 155, 281
BmrI ACTGGG 2 cut(s) 207, 259
BmuI ACTGGG 2 cut(s) 207, 259
BpmI CTGGAG 1 cut(s) 70
BpuMI CCSGG 3 cut(s) 67, 155, 281
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 160
Bse1I ACTGG 4 cut(s) 87, 202, 254, 303
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 66, 160
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 4 cut(s) 87, 202, 254, 303
BseXI GCAGC 1 cut(s) 137
BshFI GGCC 2 cut(s) 38, 44
BshNI GGYRCC 1 cut(s) 163
BsiSI CCGG 4 cut(s) 66, 155, 171, 281
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 66, 160
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 2 cut(s) 38, 44
Bsp143I GATC 2 cut(s) 144, 301
BspACI CCGC 2 cut(s) 233, 327
BspANI GGCC 2 cut(s) 38, 44
BspLI GGNNCC 3 cut(s) 70, 71, 165
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 4 cut(s) 87, 202, 254, 303
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 144, 301
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 309, 325
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 147, 304
BstMBI GATC 2 cut(s) 144, 301
BstMWI GCNNNNNNNGC 3 cut(s) 50, 176, 233
BstSCI CCNGG 3 cut(s) 65, 153, 279
BstV1I GCAGC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 38, 44
BtgZI GCGATG 1 cut(s) 251
BtsI GCAGTG 2 cut(s) 48, 99
BtsIMutI CAGTG 2 cut(s) 48, 99
Cac8I GCNNGC 2 cut(s) 309, 325
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 164
CviJI RGCY 9 cut(s) 5, 38, 44, 153, 170, 202, 220, 307, 311
CviKI_1 RGCY 9 cut(s) 5, 38, 44, 153, 170, 202, 220, 307, 311
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 146, 303
DpnII GATC 2 cut(s) 144, 301
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 3 cut(s) 56, 209, 264
FaqI GGGAC 1 cut(s) 55
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 126, 234
Fsp4HI GCNGC 2 cut(s) 126, 234
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 126, 234
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 2 cut(s) 38, 44
HapII CCGG 4 cut(s) 66, 155, 171, 281
HhaI GCGC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HpaII CCGG 4 cut(s) 66, 155, 171, 281
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 14, 213, 343
Hpy8I GTNNAC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 176, 233
HspAI GCGC 1 cut(s) 225
KflI GGGWCCC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 144, 301
Lsp1109I GCAGC 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 265
MalI GATC 2 cut(s) 146, 303
MbiI CCGCTC 1 cut(s) 327
MboI GATC 2 cut(s) 144, 301
MboII GAAGA 1 cut(s) 139
MfeI CAATTG 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 5 cut(s) 32, 55, 83, 92, 209
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 2 cut(s) 233, 307
MspI CCGG 4 cut(s) 66, 155, 171, 281
MspR9I CCNGG 3 cut(s) 67, 155, 281
MunI CAATTG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 50, 176, 233
NciI CCSGG 3 cut(s) 67, 155, 281
NdeII GATC 2 cut(s) 144, 301
NlaIV GGNNCC 3 cut(s) 70, 71, 165
NmuCI GTSAC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 44
PkrI GCNGC 2 cut(s) 127, 235
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 70, 71, 165
PspPI GGNCC 1 cut(s) 69
PspPPI RGGWCCY 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SatI GCNGC 2 cut(s) 126, 234
Sau3AI GATC 2 cut(s) 144, 301
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 67, 155, 281
SetI ASST 3 cut(s) 24, 62, 309
SinI GGWCC 1 cut(s) 69
Sse9I AATT 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 233, 327
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 65, 153, 279
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 236
TscAI CASTG 2 cut(s) 55, 106
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 55, 106
VpaK11BI GGWCC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.