Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009856

Physical Location & Seq

Genomic Coordinates Reverse (-)

4836180 .. 4836895

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTCTTCCGACGACAACGATCTAATCTACTAACGCTTGCATCGTGGAGCTCGGTGGGTCCACGGATCATGGCAAGTGCTGCCATAGAAAATGCAGATGTAACCAGCCAACTTGCGCTGCCTTCCAAAACAGAGAGACACATCTTCTCCCAGAAACCGGATAAACATAACAATGGAATTGTAGGAAACGACAGAGTATCATCAAATTCAATGGCTCGAAATCCAGAAAACCTCTCCTATCAATTGGCCAAGGCCTCCACTGCCATAACCTTTTCCGGGTCCCTCTCCGTCCTCTCCAGTTTGACACTCACTGCTGTTGTTATGGGTTTGGTGGCAGCAACACCGTTGCTGGTGATCTTCAGCCCGGTGTTGGTACCAGCAGGAGTTGCAATGCTTCTGCTGAATACCGGGCTTGTTACGTCGGGAGGGTTTGGGGCAACAGCAGCGATGGTGTTTTACTGGGTTTACAACTATGTGACAGGACAGCACCCGGCTGGTGCTGACAAACTGGATCAGCTGGCTTCAACATTGGCGAGCGGGGTTAGAAGCATCAAGAACCGACATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

190

Amino Acids

20.07

Weight (kDa)

9.99

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25140 AT5G51210
fragaria_vesca	FvH4_7g26900
malus_domestica	MD01G1176900.v1.1 MD04G1057600.v1.1 MD06G1051200.v1.1 MD07G1248300.v1.1
prunus_persica	Prupe.2G272200_v2.0.a1
pyrus_communis	pycom04g05120
rosa_chinensis	RchiOBHm_Chr1g0373571
rosa_laevigata	RLG00000026814
rosa_multiflora	Rmu_sc0002860.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252900 Rroxscaffold_4G00284130
rosa_rugosa	Rorug01G0378400 Rorug07G0085300
rosa_samantha	Rh1AG387800 Rh1BG352100 Rh1CG364800 Rh1DG382500
rosa_wichuraiana	Rw1G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	537
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	74, 519
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	157, 276, 370
AgsI	TTSAA	2 cut(s)	210, 525
AluBI	AGCT	2 cut(s)	51, 517
AluI	AGCT	2 cut(s)	51, 517
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	74, 519
AoxI	GGCC	2 cut(s)	246, 252
ApeKI	GCWGC	4 cut(s)	80, 118, 335, 443
ApoI	RAATTY	1 cut(s)	205
Asp718I	GGTACC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	59, 279
AsuC2I	CCSGG	4 cut(s)	277, 365, 409, 491
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	59, 279
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	67, 105, 347, 455
BccI	CCATC	1 cut(s)	442
BcnI	CCSGG	4 cut(s)	277, 365, 409, 491
BcoDI	GTCTC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	81, 119, 336, 444
BlsI	GCNGC	4 cut(s)	82, 120, 337, 445
Bme1390I	CCNGG	4 cut(s)	277, 365, 409, 491
Bme18I	GGWCC	2 cut(s)	59, 279
BmgT120I	GGNCC	2 cut(s)	59, 279
BmiI	GGNNCC	4 cut(s)	60, 280, 281, 375
BmrFI	CCNGG	4 cut(s)	277, 365, 409, 491
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	50, 558
BmuI	ACTGGG	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	280
BpuMI	CCSGG	4 cut(s)	277, 365, 409, 491
BsaJI	CCNNGG	2 cut(s)	62, 249
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 276, 370
Bse1I	ACTGG	3 cut(s)	297, 464, 513
Bse3DI	GCAATG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	62, 249
BseLI	CCNNNNNNNGG	3 cut(s)	157, 276, 370
BseMI	GCAATG	1 cut(s)	396
BseNI	ACTGG	3 cut(s)	297, 464, 513
BseXI	GCAGC	4 cut(s)	67, 105, 347, 455
BshFI	GGCC	2 cut(s)	248, 254
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	5 cut(s)	158, 276, 365, 408, 491
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	3 cut(s)	157, 276, 370
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	248, 254
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	20, 66, 354, 511
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	2 cut(s)	248, 254
BspLI	GGNNCC	4 cut(s)	60, 280, 281, 375
BspPI	GGATC	2 cut(s)	74, 519
BspT107I	GGYRCC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	297, 464, 513
BssECI	CCNNGG	2 cut(s)	62, 249
BssMI	GATC	4 cut(s)	20, 66, 354, 511
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	345
BstAPI	GCANNNNNTGC	2 cut(s)	80, 386
BstC8I	GCNNGC	3 cut(s)	39, 519, 535
BstDSI	CCRYGG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	23, 69, 357, 514
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	20, 66, 354, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 260, 386, 443
BstSCI	CCNGG	4 cut(s)	275, 363, 407, 489
BstV1I	GCAGC	4 cut(s)	67, 105, 347, 455
BsuRI	GGCC	2 cut(s)	248, 254
BtgI	CCRYGG	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	461
BtsI	GCAGTG	2 cut(s)	258, 309
BtsIMutI	CAGTG	2 cut(s)	258, 309
Cac8I	GCNNGC	3 cut(s)	39, 519, 535
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	59, 279
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	70, 563
CviQI	GTAC	1 cut(s)	374
DpnI	GATC	4 cut(s)	22, 68, 356, 513
DpnII	GATC	4 cut(s)	20, 66, 354, 511
EaeI	YGGCCR	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	59, 279
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	73, 566
FaiI	YATR	7 cut(s)	71, 86, 168, 266, 323, 474, 564
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	69, 562
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	4 cut(s)	81, 119, 336, 444
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	81, 119, 336, 444
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	4 cut(s)	81, 119, 336, 444
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	248, 254
HapII	CCGG	5 cut(s)	158, 276, 365, 408, 491
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	73, 566
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HpaII	CCGG	5 cut(s)	158, 276, 365, 408, 491
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	62, 466
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	3 cut(s)	224, 423, 553
Hpy8I	GTNNAC	2 cut(s)	62, 466
Hpy99I	CGWCG	2 cut(s)	15, 424
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	41, 95, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 260, 386, 443
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	73, 566
HspAI	GCGC	1 cut(s)	116
KflI	GGGWCCC	1 cut(s)	279
KpnI	GGTACC	1 cut(s)	377
Kzo9I	GATC	4 cut(s)	20, 66, 354, 511
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	4 cut(s)	67, 105, 347, 455
LweI	GCATC	2 cut(s)	50, 558
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	3 cut(s)	100, 415, 475
MalI	GATC	4 cut(s)	22, 68, 356, 513
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	4 cut(s)	20, 66, 354, 511
MboII	GAAGA	2 cut(s)	136, 349
MfeI	CAATTG	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	177, 205, 242
MluNI	TGGCCA	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	242, 265, 293, 302, 419
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	5 cut(s)	158, 276, 365, 408, 491
MspR9I	CCNGG	4 cut(s)	277, 365, 409, 491
MunI	CAATTG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	80, 260, 386, 443
NciI	CCSGG	4 cut(s)	277, 365, 409, 491
NdeII	GATC	4 cut(s)	20, 66, 354, 511
NlaIII	CATG	2 cut(s)	73, 566
NlaIV	GGNNCC	4 cut(s)	60, 280, 281, 375
NmuCI	GTSAC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	82, 120, 337, 445
PpuMI	RGGWCCY	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	60, 280, 281, 375
PspPI	GGNCC	2 cut(s)	59, 279
PspPPI	RGGWCCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	4 cut(s)	81, 119, 336, 444
Sau3AI	GATC	4 cut(s)	20, 66, 354, 511
Sau96I	GGNCC	2 cut(s)	59, 279
ScrFI	CCNGG	4 cut(s)	277, 365, 409, 491
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	5 cut(s)	53, 234, 272, 422, 519
SfaNI	GCATC	2 cut(s)	50, 558
SinI	GGWCC	2 cut(s)	59, 279
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	177, 205, 242
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	4 cut(s)	275, 363, 407, 489
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	177, 205, 242
TscAI	CASTG	2 cut(s)	265, 316
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	4 cut(s)	80, 118, 335, 443
Tsp45I	GTSAC	1 cut(s)	475
TspGWI	ACGGA	2 cut(s)	79, 277
TspRI	CASTG	2 cut(s)	265, 316
VpaK11BI	GGWCC	2 cut(s)	59, 279
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.