Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009856

Physical Location & Seq

Genomic Coordinates Reverse (-)

20199316 .. 20200403

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGAGCTTCACCAGCAATACCAGCAGTCCCACCCCTTCCAGGCCCAACAAGGCATGATGCAGCAACAACCCAAGTCCTACCAGGTCGCCAAGGCCGCCACCGCAGTCACCGCCGGGGGCTCACTCCTTGTCCTCTCCGGTTTGGTCCTCGCTGGTACGGTTATATGCTTGACCGTAGCCACTCCCCTCCTTGTGATCTTCAGTCCGGTTCTCGTACCGGCTGTCATCACCGTGGCTCTCATTATGACCGGCTTCTTGGCCTCCGGCGGGTTTGGCGTGGCGGCCATCAGTGTCTTGTCGTGGATCTACAAGTACGTGACCGGAAGCCACCCTCCTGGAGCGGACAAGCTCGACTCAGCACGACACAAGCTGGCCGGGAAGGCAAGGGACATGAAGGATCGAGCTGAACAGTTTGGGCAACAGCATATGGGCACTGAACGCGGGCAGCATGGTCAGCATCAGACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0016020 GO:0019915 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

158

Amino Acids

16.67

Weight (kDa)

9.42

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	29 - 140	1.7e-48	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25140 AT5G51210
fragaria_vesca	FvH4_7g26900
malus_domestica	MD01G1176900.v1.1 MD04G1057600.v1.1 MD06G1051200.v1.1 MD07G1248300.v1.1
prunus_persica	Prupe.2G272200_v2.0.a1
pyrus_communis	pycom04g05120
rosa_chinensis	RchiOBHm_Chr1g0373571
rosa_laevigata	RLG00000026814
rosa_multiflora	Rmu_sc0002860.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252900 Rroxscaffold_4G00284130
rosa_rugosa	Rorug01G0378400 Rorug07G0085300
rosa_samantha	Rh1AG387800 Rh1BG352100 Rh1CG364800 Rh1DG382500
rosa_wichuraiana	Rw1G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	344
AccII	CGCG	1 cut(s)	444
AciI	CCGC	7 cut(s)	99, 105, 114, 270, 284, 344, 444
AclWI	GGATC	2 cut(s)	314, 408
AcoI	YGGCCR	2 cut(s)	285, 375
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	160, 219, 317
AfiI	CCNNNNNNNGG	2 cut(s)	43, 270
AjnI	CCWGG	3 cut(s)	42, 84, 337
AluBI	AGCT	4 cut(s)	10, 352, 373, 407
AluI	AGCT	4 cut(s)	10, 352, 373, 407
AlwI	GGATC	2 cut(s)	314, 408
AoxI	GGCC	5 cut(s)	45, 96, 261, 285, 375
ApeKI	GCWGC	2 cut(s)	64, 448
AspS9I	GGNCC	2 cut(s)	46, 148
AsuC2I	CCSGG	2 cut(s)	118, 379
AsuHPI	GGTGA	3 cut(s)	5, 103, 223
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	76, 460
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	3 cut(s)	44, 86, 339
BcnI	CCSGG	2 cut(s)	118, 379
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	4 cut(s)	65, 99, 285, 449
BlsI	GCNGC	4 cut(s)	66, 100, 286, 450
Bme1390I	CCNGG	5 cut(s)	44, 86, 118, 339, 379
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	46, 148
BmrFI	CCNGG	5 cut(s)	44, 86, 118, 339, 379
BmsI	GCATC	2 cut(s)	51, 469
BpmI	CTGGAG	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	118, 379
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	93, 117, 234
BsaWI	WCCGGW	3 cut(s)	140, 208, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 270
Bse118I	RCCGGY	2 cut(s)	220, 251
BseBI	CCWGG	3 cut(s)	44, 86, 339
BseDI	CCNNGG	3 cut(s)	93, 117, 234
BseLI	CCNNNNNNNGG	2 cut(s)	43, 270
BseMII	CTCAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	76, 460
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	5 cut(s)	47, 98, 263, 287, 377
BsiSI	CCGG	8 cut(s)	117, 141, 209, 221, 252, 267, 324, 378
BslFI	GGGAC	2 cut(s)	16, 404
BslI	CCNNNNNNNGG	2 cut(s)	43, 270
BsmFI	GGGAC	2 cut(s)	16, 404
BsnI	GGCC	5 cut(s)	47, 98, 263, 287, 377
Bsp1286I	GDGCHC	2 cut(s)	125, 437
Bsp143I	GATC	3 cut(s)	198, 306, 400
BspACI	CCGC	7 cut(s)	99, 105, 114, 270, 284, 344, 444
BspANI	GGCC	5 cut(s)	47, 98, 263, 287, 377
BspCNI	CTCAG	1 cut(s)	371
BspFNI	CGCG	1 cut(s)	444
BspPI	GGATC	2 cut(s)	314, 408
BsrBI	CCGCTC	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	220, 251
BssAI	RCCGGY	2 cut(s)	220, 251
BssECI	CCNNGG	3 cut(s)	93, 117, 234
BssMI	GATC	3 cut(s)	198, 306, 400
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	44, 86, 339
Bst4CI	ACNGT	4 cut(s)	163, 178, 235, 414
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	375, 446
BstDEI	CTNAG	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	201, 309, 403
BstMBI	GATC	3 cut(s)	198, 306, 400
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 441, 457
BstNI	CCWGG	3 cut(s)	44, 86, 339
BstSCI	CCNGG	5 cut(s)	42, 84, 116, 337, 377
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	76, 460
BstX2I	RGATCY	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	47, 98, 263, 287, 377
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	298, 435
Cac8I	GCNNGC	2 cut(s)	375, 446
Cfr10I	RCCGGY	2 cut(s)	220, 251
Cfr13I	GGNCC	2 cut(s)	46, 148
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	159, 218, 316
CviAII	CATG	3 cut(s)	58, 394, 452
CviQI	GTAC	3 cut(s)	159, 218, 316
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	3 cut(s)	200, 308, 402
DpnII	GATC	3 cut(s)	198, 306, 400
EaeI	YGGCCR	2 cut(s)	285, 375
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	42, 84, 337
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	61, 397, 455
FaiI	YATR	8 cut(s)	59, 167, 169, 248, 395, 429, 431, 453
FaqI	GGGAC	2 cut(s)	16, 404
FatI	CATG	3 cut(s)	57, 393, 451
FauI	CCCGC	2 cut(s)	263, 437
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	4 cut(s)	65, 99, 285, 449
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	65, 99, 285, 449
GluI	GCNGC	4 cut(s)	65, 99, 285, 449
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	47, 98, 263, 287, 377
HapII	CCGG	8 cut(s)	117, 141, 209, 221, 252, 267, 324, 378
Hin1II	CATG	3 cut(s)	61, 397, 455
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	8 cut(s)	117, 141, 209, 221, 252, 267, 324, 378
HphI	GGTGA	3 cut(s)	5, 103, 223
Hpy188I	TCNGA	1 cut(s)	465
HpyAV	CCTTC	3 cut(s)	49, 376, 391
HpyCH4III	ACNGT	4 cut(s)	163, 178, 235, 414
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 441, 457
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	61, 397, 455
Kzo9I	GATC	3 cut(s)	198, 306, 400
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	76, 460
LweI	GCATC	2 cut(s)	51, 469
MabI	ACCWGGT	1 cut(s)	84
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	109, 319
MalI	GATC	3 cut(s)	200, 308, 402
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	3 cut(s)	198, 306, 400
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	125, 437
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	146, 161, 200, 274, 345
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	8 cut(s)	117, 141, 209, 221, 252, 267, 324, 378
MspR9I	CCNGG	5 cut(s)	44, 86, 118, 339, 379
MvaI	CCWGG	3 cut(s)	44, 86, 339
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	9 cut(s)	16, 25, 98, 104, 113, 276, 383, 441, 457
NciI	CCSGG	2 cut(s)	118, 379
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	3 cut(s)	198, 306, 400
NlaIII	CATG	3 cut(s)	61, 397, 455
NmuCI	GTSAC	2 cut(s)	109, 319
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	66, 100, 286, 450
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	3 cut(s)	42, 84, 337
PspGI	CCWGG	3 cut(s)	42, 84, 337
PspPI	GGNCC	2 cut(s)	46, 148
PsuI	RGATCY	1 cut(s)	306
RsaI	GTAC	3 cut(s)	160, 219, 317
RsaNI	GTAC	3 cut(s)	159, 218, 316
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	4 cut(s)	65, 99, 285, 449
Sau3AI	GATC	3 cut(s)	198, 306, 400
Sau96I	GGNCC	2 cut(s)	46, 148
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	44, 86, 118, 339, 379
SduI	GDGCHC	2 cut(s)	125, 437
SetI	ASST	6 cut(s)	12, 90, 321, 354, 375, 409
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	51, 469
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	233
SsiI	CCGC	7 cut(s)	99, 105, 114, 270, 284, 344, 444
StyD4I	CCNGG	5 cut(s)	42, 84, 116, 337, 377
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	4 cut(s)	163, 178, 235, 414
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	354, 403
TauI	GCSGC	2 cut(s)	101, 287
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	2 cut(s)	298, 442
TseFI	GTSAC	2 cut(s)	109, 319
TseI	GCWGC	2 cut(s)	64, 448
Tsp45I	GTSAC	2 cut(s)	109, 319
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	298, 442
VpaK11BI	GGWCC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.