MD06G1051200.v1.1

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009856
Physical Location & Seq
Reverse (-)
7040512 .. 7040856
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1051200.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTCCGGTTATCTAGTCGTGTCAGAAATTGCCAAGCCTACTTCAAAGGCCGCTTCAAATGGTCCTTTGAAAACAAATCATAATTTGACGCACATAAATGGTTCAAAATCCACAAAACCCTCTTATCAATTAGCCAAGACCTCAACTACAATAACCTTTTCCGATCTCTCTGTCCTCTCCGGTTTGACACTCACGACGGTTGTTATTGCTTTGGTGGCTGCACCACCATTGCTGGTGATCTTTAGCAAGGTGTTGGTACCAACAGCAGTTGCAATGCTTCTGCTGACTACCGGCCTTGTTATGTCCGGAGGGCTTGGGGCAACCGCGGTGATGGTATTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

115

Amino Acids

11.72

Weight (kDa)

9.82

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 47 - 113 2.8e-13 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 1 cut(s) 326
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 3 cut(s) 51, 324, 326
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 4 cut(s) 45, 57, 70, 105
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 2 cut(s) 48, 292
ApeKI GCWGC 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 247, 340
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 325
BfaI CTAG 2 cut(s) 14, 343
BisI GCNGC 2 cut(s) 51, 219
BlsI GCNGC 2 cut(s) 52, 220
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 3 cut(s) 5, 179, 305
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 2 cut(s) 227, 279
BseAI TCCGGA 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 227, 279
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 50, 294
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 4 cut(s) 6, 180, 291, 306
BsnI GGCC 2 cut(s) 50, 294
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 163, 237
BspACI CCGC 3 cut(s) 51, 324, 326
BspANI GGCC 2 cut(s) 50, 294
BspEI TCCGGA 1 cut(s) 305
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BsrDI GCAATG 2 cut(s) 227, 279
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 163, 237
Bst4CI ACNGT 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 326
BstKTI GATC 2 cut(s) 166, 240
BstMBI GATC 2 cut(s) 163, 237
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 50, 294
BtgI CCRYGG 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 327
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 257
CviJI RGCY 6 cut(s) 37, 50, 134, 218, 294, 313
CviKI_1 RGCY 6 cut(s) 37, 50, 134, 218, 294, 313
CviQI GTAC 1 cut(s) 257
DpnI GATC 2 cut(s) 165, 239
DpnII GATC 2 cut(s) 163, 237
Eco47I GGWCC 1 cut(s) 62
FaiI YATR 3 cut(s) 81, 95, 302
Fnu4HI GCNGC 2 cut(s) 51, 219
Fsp4HI GCNGC 2 cut(s) 51, 219
FspBI CTAG 2 cut(s) 14, 343
GluI GCNGC 2 cut(s) 51, 219
HaeIII GGCC 2 cut(s) 50, 294
HapII CCGG 4 cut(s) 6, 180, 291, 306
HgaI GACGC 1 cut(s) 97
HpaII CCGG 4 cut(s) 6, 180, 291, 306
HphI GGTGA 2 cut(s) 247, 340
Hpy188I TCNGA 2 cut(s) 25, 163
Hpy188III TCNNGA 2 cut(s) 193, 306
Hpy99I CGWCG 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 221, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 305
KpnI GGTACC 1 cut(s) 260
KspI CCGCGG 1 cut(s) 327
Kzo9I GATC 2 cut(s) 163, 237
LpnPI CCDG 5 cut(s) 19, 193, 218, 304, 319
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 2 cut(s) 14, 343
MalI GATC 2 cut(s) 165, 239
MboI GATC 2 cut(s) 163, 237
MluCI AATT 3 cut(s) 27, 82, 128
MnlI CCTC 4 cut(s) 130, 151, 185, 302
MroI TCCGGA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 4 cut(s) 6, 180, 291, 306
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 163, 237
NlaIV GGNNCC 1 cut(s) 258
PkrI GCNGC 2 cut(s) 52, 220
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 62
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 96
SacII CCGCGG 1 cut(s) 327
SatI GCNGC 2 cut(s) 51, 219
Sau3AI GATC 2 cut(s) 163, 237
Sau96I GGNCC 1 cut(s) 62
SetI ASST 3 cut(s) 143, 158, 252
Sfr303I CCGCGG 1 cut(s) 327
SgrBI CCGCGG 1 cut(s) 327
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 3 cut(s) 27, 82, 128
SsiI CCGC 3 cut(s) 51, 324, 326
SspMI CTAG 2 cut(s) 14, 343
TaaI ACNGT 1 cut(s) 199
TasI AATT 3 cut(s) 27, 82, 128
TauI GCSGC 1 cut(s) 53
TseI GCWGC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 62
XspI CTAG 2 cut(s) 14, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.