Rroxscaffold_3G00252900

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009856
Physical Location & Seq
Reverse (-)
46968831 .. 46969241
411 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00252900.1

Sequence Viewer

Length: 411 bp
ATGGCTCAAAACCCTGAAACCGAACAGAACCTCCCTTACCAAGTGGCTAAGGCTTCCACTGCATTAACCTTTGGTGGGTCTCTCTCAGTCCTCTCGGGGCTAACTCCCACTGCAGCCATCATTGGCTTGACAGCACTGACACCACTGCTGGTGGTCTTCAGCCCGGTTTTGGTTGCAGCTGCTGTTGTGATGGTTCTGCTGGCTACCGGCCTTTTCTCGTCGGGAGGGCTTGGGGCTATGGCAGCTTTTGTGTTTTACTGGCTGCACAGTTACTTGGCAGGAAAGCACCCAGTTGGTGCTGACATGCTTGATCAGGTGGCAGCAAAGTTGGCGAGCGGGGCTAGGGGCATCAAGGACCGAGCAACGCAGTCCGGTCAGCACCTCCTAAATGGTTCACAACAGGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

136

Amino Acids

13.88

Weight (kDa)

6.81

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 14 - 124 1.1e-29 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 75, 169
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 179, 245
AluI AGCT 2 cut(s) 179, 245
Alw26I GTCTC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 6 cut(s) 113, 176, 179, 242, 262, 320
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 6 cut(s) 125, 166, 188, 249, 254, 332
BccI CCATC 2 cut(s) 125, 184
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 6 cut(s) 114, 177, 180, 243, 263, 321
BlsI GCNGC 6 cut(s) 115, 178, 181, 244, 264, 322
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 169
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 263, 290
BseLI CCNNNNNNNGG 2 cut(s) 75, 169
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 263, 290
BseXI GCAGC 6 cut(s) 125, 166, 188, 249, 254, 332
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 164, 207, 372
BslI CCNNNNNNNGG 2 cut(s) 75, 169
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 263, 290
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 201, 334
BstDEI CTNAG 2 cut(s) 48, 85
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 4 cut(s) 59, 242, 329, 338
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 6 cut(s) 125, 166, 188, 249, 254, 332
BstV2I GAAGAC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 210
BtsI GCAGTG 3 cut(s) 57, 108, 143
BtsIMutI CAGTG 4 cut(s) 57, 108, 134, 143
Cac8I GCNNGC 2 cut(s) 201, 334
CaiI CAGNNNCTG 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 355
CviAII CATG 1 cut(s) 304
DdeI CTNAG 2 cut(s) 48, 85
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 94
FaeI CATG 1 cut(s) 307
FaiI YATR 2 cut(s) 239, 305
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 329
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 114, 177, 180, 243, 263, 321
Fsp4HI GCNGC 6 cut(s) 114, 177, 180, 243, 263, 321
FspBI CTAG 1 cut(s) 342
GluI GCNGC 6 cut(s) 114, 177, 180, 243, 263, 321
HaeIII GGCC 1 cut(s) 210
HapII CCGG 3 cut(s) 164, 207, 372
Hin1II CATG 1 cut(s) 307
HpaII CCGG 3 cut(s) 164, 207, 372
Hpy166II GTNNAC 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 62, 113, 176, 265
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 242, 329, 338
HpyF3I CTNAG 2 cut(s) 48, 85
Hsp92II CATG 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
Lsp1109I GCAGC 6 cut(s) 125, 166, 188, 249, 254, 332
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 312
MbiI CCGCTC 1 cut(s) 336
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 148
MnlI CCTC 4 cut(s) 41, 101, 218, 392
MseI TTAA 2 cut(s) 65, 409
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 3 cut(s) 164, 207, 372
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 4 cut(s) 59, 242, 329, 338
NciI CCSGG 1 cut(s) 164
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 307
NspI RCATGY 1 cut(s) 307
PkrI GCNGC 6 cut(s) 115, 178, 181, 244, 264, 322
PspPI GGNCC 1 cut(s) 355
PsrI GAACNNNNNNTAC 2 cut(s) 20, 52
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 65, 409
SatI GCNGC 6 cut(s) 114, 177, 180, 243, 263, 321
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 164
SetI ASST 6 cut(s) 33, 71, 181, 247, 318, 384
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 355
SsiI CCGC 1 cut(s) 336
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 269
TaqII GACCGA 1 cut(s) 372
Tru1I TTAA 2 cut(s) 65, 409
Tru9I TTAA 2 cut(s) 65, 409
TscAI CASTG 4 cut(s) 64, 115, 141, 150
TseI GCWGC 6 cut(s) 113, 176, 179, 242, 262, 320
TspRI CASTG 4 cut(s) 64, 115, 141, 150
VpaK11BI GGWCC 1 cut(s) 355
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.