Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009856

Physical Location & Seq

Genomic Coordinates Reverse (-)

27753420 .. 27754199

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1176900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGACATAATATATATAGAAACTATCTCGTTGTTTTGGTCGCTTTGGTATCAAATTCAAAGGGTGGCTCCGCCAGTGGCCACCCCCCTGCTGGTCATATTCAGCCCTGTTCTTGTCCCAGCCGTGATCACCCTTTCCCTCATAATAATGGGGTTCTTGACATCCGGTGGGTTTGGTGTGGCTTCGGTGACGGTGTTGACATGGATCTACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0016020 GO:0019915 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

72

Amino Acids

7.9

Weight (kDa)

5.82

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oleosin	PF01277	26 - 71	3.7e-17	Oleosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25140 AT5G51210
fragaria_vesca	FvH4_7g26900
malus_domestica	MD01G1176900.v1.1 MD04G1057600.v1.1 MD06G1051200.v1.1 MD07G1248300.v1.1
prunus_persica	Prupe.2G272200_v2.0.a1
pyrus_communis	pycom04g05120
rosa_chinensis	RchiOBHm_Chr1g0373571
rosa_laevigata	RLG00000026814
rosa_multiflora	Rmu_sc0002860.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252900 Rroxscaffold_4G00284130
rosa_rugosa	Rorug01G0378400 Rorug07G0085300
rosa_samantha	Rh1AG387800 Rh1BG352100 Rh1CG364800 Rh1DG382500
rosa_wichuraiana	Rw1G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	59
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	121, 199
BalI	TGGCCA	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	126, 204
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	126, 204
Bst4CI	ACNGT	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	129, 207
BstMBI	GATC	2 cut(s)	126, 204
BstSFI	CTRYAG	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	81
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	5 cut(s)	68, 80, 105, 122, 182
CviKI_1	RGCY	5 cut(s)	68, 80, 105, 122, 182
DpnI	GATC	2 cut(s)	128, 206
DpnII	GATC	2 cut(s)	126, 204
EaeI	YGGCCR	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	60
FaeI	CATG	1 cut(s)	204
FaiI	YATR	7 cut(s)	8, 13, 15, 17, 98, 143, 202
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	126
FokI	GGATG	1 cut(s)	148
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	121, 199
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	126, 204
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	77, 87, 101, 120, 132, 178
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	128, 206
MboI	GATC	2 cut(s)	126, 204
MflI	RGATCY	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	126, 204
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	126, 204
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	1 cut(s)	54
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.