RchiOBHm_Chr1g0373571

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009856
Physical Location & Seq
Reverse (-)
61740546 .. 61741220
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59743

Sequence Viewer

Length: 675 bp
ATGCAGCCCCTGCATGAGAAGCTCGTCAACACGTACCTCTCCTCTCCTCAACACGTGCCTCCCCACCTCACATCCCTCCCTCTATATAACAAACCTCCACACCTCTTCTCCTCCCTCACTTGCAAAATCCATTTCTTAAAAACACTTTTCTGTTTATTCATTCACACATTTCCTCAACTAGTTTCTTTGCATTCATCAAAAATGGCAGAGCACCACCAGCAATACCTGCAGTCCCATCCCTTTCAGGGACAACAAGGCATGCAGCACCAACAAACTAAGTCCTACCAGGTCGCCAAGGCCGCCACCGCAGTCACCGCCGGGGGTTCACTCCTCGTCCTCTCCGGTTTGGTCCTCGCCGGCACAGTCATATGCTTGACCATAGCCACTCCTCTCCTCGTGATCTTCAGTCCGGTCCTCGTCCCGGCTGTGATCACCGTGGCGCTCATAATGACTGGCTTCTTGGCCTCCGGCGGGTTCGGCGTGGCGGCCATCAGTGTCTTGTCGTGGATTTACAAGTACGTGACAGGGAGCCAGCCTCCCGGCGCGGAACAGCTCGACTCGGCACGACACAAGCTGGCGGGGAAGGCCAGGGACATGAAGGATAGAGCTGAGCAGTTTGGGCAACAGCATATGGGCTCTGACCGCGGTCAGCACGGTCAACATCAGAGTTCTTAA

Protein Analysis

224

Amino Acids

24.36

Weight (kDa)

9.46

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 96 - 207 2.8e-47 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
AccII CGCG 2 cut(s) 545, 645
AciI CCGC 9 cut(s) 300, 306, 315, 471, 485, 545, 578, 643, 645
AcoI YGGCCR 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 388
AcvI CACGTG 1 cut(s) 55
AfaI GTAC 2 cut(s) 35, 518
AfiI CCNNNNNNNGG 3 cut(s) 245, 421, 471
AflIII ACRYGT 2 cut(s) 30, 52
AhlI ACTAGT 1 cut(s) 178
AjnI CCWGG 2 cut(s) 285, 587
AluBI AGCT 4 cut(s) 22, 553, 574, 608
AluI AGCT 4 cut(s) 22, 553, 574, 608
Alw21I GWGCWC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 4 cut(s) 297, 462, 486, 585
ApeKI GCWGC 2 cut(s) 4, 262
AspLEI GCGC 2 cut(s) 442, 545
AspS9I GGNCC 2 cut(s) 349, 412
AsuC2I CCSGG 3 cut(s) 319, 422, 540
AsuHPI GGTGA 2 cut(s) 304, 424
AvaII GGWCC 2 cut(s) 349, 412
BanII GRGCYC 1 cut(s) 638
BauI CACGAG 1 cut(s) 395
BbrPI CACGTG 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 16, 274
BccI CCATC 2 cut(s) 243, 497
BciT130I CCWGG 2 cut(s) 287, 589
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 3 cut(s) 319, 422, 540
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 234
BisI GCNGC 4 cut(s) 5, 263, 300, 486
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 4 cut(s) 6, 264, 301, 487
Bme1390I CCNGG 5 cut(s) 287, 319, 422, 540, 589
Bme18I GGWCC 2 cut(s) 349, 412
BmgT120I GGNCC 2 cut(s) 349, 412
BmiI GGNNCC 1 cut(s) 530
BmrFI CCNGG 5 cut(s) 287, 319, 422, 540, 589
BoxI GACNNNNGTC 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 520, 552
Bpu1102I GCTNAGC 1 cut(s) 609
BpuMI CCSGG 3 cut(s) 319, 422, 540
BsaAI YACGTR 3 cut(s) 33, 55, 520
BsaJI CCNNGG 5 cut(s) 294, 318, 435, 588, 643
BsaWI WCCGGW 2 cut(s) 341, 409
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 421, 471
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 287, 589
BseDI CCNNGG 5 cut(s) 294, 318, 435, 588, 643
BseGI GGATG 2 cut(s) 71, 235
BseLI CCNNNNNNNGG 3 cut(s) 245, 421, 471
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 6 cut(s) 31, 36, 100, 320, 378, 383
BseXI GCAGC 2 cut(s) 16, 274
Bsh1236I CGCG 2 cut(s) 545, 645
BshFI GGCC 4 cut(s) 299, 464, 488, 587
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 7 cut(s) 318, 342, 357, 410, 422, 468, 540
BslFI GGGAC 4 cut(s) 217, 261, 404, 605
BslI CCNNNNNNNGG 3 cut(s) 245, 421, 471
BsmFI GGGAC 4 cut(s) 217, 261, 404, 605
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 4 cut(s) 299, 464, 488, 587
Bsp1286I GDGCHC 2 cut(s) 213, 638
Bsp143I GATC 2 cut(s) 399, 429
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 9 cut(s) 300, 306, 315, 471, 485, 545, 578, 643, 645
BspANI GGCC 4 cut(s) 299, 464, 488, 587
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 2 cut(s) 545, 645
BspLI GGNNCC 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 294, 318, 435, 588, 643
BssMI GATC 2 cut(s) 399, 429
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 287, 589
Bst4CI ACNGT 3 cut(s) 364, 436, 656
Bst6I CTCTTC 1 cut(s) 110
BstAPI GCANNNNNTGC 2 cut(s) 10, 226
BstBAI YACGTR 3 cut(s) 33, 55, 520
BstC8I GCNNGC 4 cut(s) 260, 358, 533, 576
BstDEI CTNAG 2 cut(s) 276, 609
BstDSI CCRYGG 2 cut(s) 435, 643
BstF5I GGATG 2 cut(s) 71, 235
BstFNI CGCG 2 cut(s) 545, 645
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 2 cut(s) 442, 545
BstKTI GATC 2 cut(s) 402, 432
BstMBI GATC 2 cut(s) 399, 429
BstNI CCWGG 2 cut(s) 287, 589
BstNSI RCATGY 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 645
BstSCI CCNGG 5 cut(s) 285, 317, 420, 538, 587
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 2 cut(s) 545, 645
BstV1I GCAGC 2 cut(s) 16, 274
BsuRI GGCC 4 cut(s) 299, 464, 488, 587
BtgI CCRYGG 2 cut(s) 435, 643
BtsCI GGATG 2 cut(s) 71, 235
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 4 cut(s) 260, 358, 533, 576
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 2 cut(s) 442, 545
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 349, 412
Cfr42I CCGCGG 1 cut(s) 646
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 2 cut(s) 34, 517
CviAII CATG 3 cut(s) 14, 259, 595
CviQI GTAC 2 cut(s) 34, 517
DdeI CTNAG 2 cut(s) 276, 609
DpnI GATC 2 cut(s) 401, 431
DpnII GATC 2 cut(s) 399, 429
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 638
Eco47I GGWCC 2 cut(s) 349, 412
Eco57I CTGAAG 1 cut(s) 388
Eco72I CACGTG 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 285, 587
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 17, 262, 598
FaqI GGGAC 4 cut(s) 217, 261, 404, 605
FatI CATG 3 cut(s) 13, 258, 594
FauI CCCGC 2 cut(s) 464, 571
FauNDI CATATG 2 cut(s) 368, 630
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 5, 263, 300, 486
FokI GGATG 2 cut(s) 58, 222
FriOI GRGCYC 1 cut(s) 638
Fsp4HI GCNGC 4 cut(s) 5, 263, 300, 486
FspBI CTAG 1 cut(s) 179
GlaI GCGC 2 cut(s) 441, 544
GluI GCNGC 4 cut(s) 5, 263, 300, 486
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 4 cut(s) 299, 464, 488, 587
HapII CCGG 7 cut(s) 318, 342, 357, 410, 422, 468, 540
HhaI GCGC 2 cut(s) 442, 545
Hin1II CATG 3 cut(s) 17, 262, 598
Hin6I GCGC 2 cut(s) 440, 543
HinP1I GCGC 2 cut(s) 440, 543
HincII GTYRAC 2 cut(s) 28, 659
HindII GTYRAC 2 cut(s) 28, 659
HinfI GANTC 1 cut(s) 557
HpaII CCGG 7 cut(s) 318, 342, 357, 410, 422, 468, 540
HphI GGTGA 2 cut(s) 304, 424
Hpy166II GTNNAC 3 cut(s) 28, 326, 659
Hpy188I TCNGA 2 cut(s) 640, 666
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 3 cut(s) 28, 326, 659
HpyAV CCTTC 2 cut(s) 577, 592
HpyCH4III ACNGT 3 cut(s) 364, 436, 656
HpyCH4IV ACGT 3 cut(s) 32, 54, 519
HpyCH4V TGCA 6 cut(s) 4, 13, 123, 190, 229, 262
HpyF3I CTNAG 2 cut(s) 276, 609
HpySE526I ACGT 3 cut(s) 32, 54, 519
Hsp92II CATG 3 cut(s) 17, 262, 598
HspAI GCGC 2 cut(s) 440, 543
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 429
KspI CCGCGG 1 cut(s) 646
Kzo9I GATC 2 cut(s) 399, 429
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 2 cut(s) 16, 274
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 1 cut(s) 179
MaeII ACGT 3 cut(s) 32, 54, 519
MaeIII GTNAC 2 cut(s) 310, 520
MalI GATC 2 cut(s) 401, 431
MboI GATC 2 cut(s) 399, 429
MboII GAAGA 2 cut(s) 97, 394
MhlI GDGCHC 2 cut(s) 213, 638
MlyI GAGTC 1 cut(s) 551
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 2 cut(s) 137, 673
MspA1I CMGCKG 1 cut(s) 645
MspI CCGG 7 cut(s) 318, 342, 357, 410, 422, 468, 540
MspR9I CCNGG 5 cut(s) 287, 319, 422, 540, 589
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 2 cut(s) 287, 589
MvnI CGCG 2 cut(s) 545, 645
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 3 cut(s) 319, 422, 540
NdeI CATATG 2 cut(s) 368, 630
NdeII GATC 2 cut(s) 399, 429
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 17, 262, 598
NlaIV GGNNCC 1 cut(s) 530
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 2 cut(s) 310, 520
NspI RCATGY 1 cut(s) 262
PaeI GCATGC 1 cut(s) 262
PctI GAATGC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 358
PkrI GCNGC 4 cut(s) 6, 264, 301, 487
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 55
PmlI CACGTG 1 cut(s) 55
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 3 cut(s) 33, 55, 520
PshAI GACNNNNGTC 1 cut(s) 645
Psp6I CCWGG 2 cut(s) 285, 587
PspCI CACGTG 1 cut(s) 55
PspGI CCWGG 2 cut(s) 285, 587
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 2 cut(s) 349, 412
PstI CTGCAG 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 10
RsaI GTAC 2 cut(s) 35, 518
RsaNI GTAC 2 cut(s) 34, 517
SacII CCGCGG 1 cut(s) 646
SaqAI TTAA 2 cut(s) 137, 673
SatI GCNGC 4 cut(s) 5, 263, 300, 486
Sau3AI GATC 2 cut(s) 399, 429
Sau96I GGNCC 2 cut(s) 349, 412
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 5 cut(s) 287, 319, 422, 540, 589
SduI GDGCHC 2 cut(s) 213, 638
SexAI ACCWGGT 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 646
SgrBI CCGCGG 1 cut(s) 646
SinI GGWCC 2 cut(s) 349, 412
SpeI ACTAGT 1 cut(s) 178
SphI GCATGC 1 cut(s) 262
SsiI CCGC 9 cut(s) 300, 306, 315, 471, 485, 545, 578, 643, 645
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 5 cut(s) 285, 317, 420, 538, 587
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 364, 436, 656
TaiI ACGT 3 cut(s) 35, 57, 522
TaqI TCGA 1 cut(s) 555
TauI GCSGC 2 cut(s) 302, 488
Tru1I TTAA 2 cut(s) 137, 673
Tru9I TTAA 2 cut(s) 137, 673
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 2 cut(s) 310, 520
TseI GCWGC 2 cut(s) 4, 262
Tsp45I GTSAC 2 cut(s) 310, 520
TspDTI ATGAA 3 cut(s) 148, 183, 611
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 349, 412
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.