Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Reverse (-)

49175467 .. 49182427

Gene Structure 6961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0378400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACAAGCACACTGATACCACTACTTCTTGGGTCTTTAATGTCAGTTATATGAGTTTGGCAGCCTGTTCAGTCTATGGTTATGCAATTTTGGTCCCCTTGGCGTTTTATTTTTTGCTGCAGTATATGGGTGCAAAAACTAGCCTTGTTCGATTCTGGTGTATGTGGGGATACTCTCTCTTCATTTTTGTTGTAGCATCTTTTTTATTACTTATCCCATTTGAGGCTCTTCGATGGATCATTATAGTTCTTGTCGGTGCTGCATCTGGTTCCTTCGTTGCTTTGAATCTCAAGTCTTATATGGAGGGGAGTGATTTTACAATAGTGGTGATCGCTGCATTTCTCTTGCAATTGGCTCTGGCAATCTTCTTTAAGGTAGGAACTGCGGTTGTGGCTGAAAAGGATGGAAGAATTGCGCTTGAAAGATTACAAGTGCTTTGTGAGAAGCTTATTAAGGAGTTGAGATCTCAAGAATATGAGGTGATGTTGGTGACATCAGGAGCTGTGGCCCTTGGTCGTCAAGTGCTGAGAGACAGGATATCAGTTCACAACAGCAGGTATCTATTTTGCAGCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGACCGTGTTTAGTGAGGATGTGACAGAAGCTCAGTGTCTTGTTACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCTATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATATGAGGTATTTACCACTCTTCTATACATGAATCAGAAATTGATTATGAAGCTCTGGCTAGTCTGTGCACATACTGATTGCATCATTGCAGAAGACCAAGAAGTTGTGGAAACTTTTTTAGGTCAAGTTGGCAGTGCTGCTGTTTCTCACAATGCAAGCACAAGATTTAGCGATGGTGCTCGATTTGGACTTGGGGCAGAGGTCGGCATCAGCACCAGTCGAATTCATGCTCGGGGCCCTGTAGGAGTAGAAGGATTGTTAACAACGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005811 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0010154 GO:0010344 GO:0010876 GO:0016020 GO:0019915 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050826 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oleosin

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

5.92

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yip1	PF04893	12 - 123	5.4e-07	Yip1 domain
AA_kinase	PF00696	124 - 273	1.6e-08	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	546
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	1047
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	286, 422, 731, 790
AluBI	AGCT	8 cut(s)	448, 503, 573, 596, 623, 686, 739, 877
AluI	AGCT	8 cut(s)	448, 503, 573, 596, 623, 686, 739, 877
Alw21I	GWGCWC	2 cut(s)	895, 1006
Alw26I	GTCTC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	891
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	1056
AoxI	GGCC	2 cut(s)	507, 1060
ApaI	GGGCCC	1 cut(s)	1064
ApaLI	GTGCAC	1 cut(s)	891
ApeKI	GCWGC	8 cut(s)	62, 118, 260, 335, 570, 620, 736, 962
ApoI	RAATTY	1 cut(s)	1047
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	4 cut(s)	94, 508, 1060, 1061
AsuHPI	GGTGA	3 cut(s)	340, 493, 502
AvaI	CYCGRG	1 cut(s)	1056
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	895, 1064
BanII	GRGCYC	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	895, 1006
BbvI	GCAGC	8 cut(s)	74, 105, 247, 322, 582, 632, 748, 949
BccI	CCATC	5 cut(s)	228, 398, 599, 637, 992
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	2 cut(s)	141, 884
BfmI	CTRYAG	2 cut(s)	119, 1065
BfuAI	ACCTGC	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	464
BisI	GCNGC	8 cut(s)	63, 119, 261, 336, 571, 621, 737, 963
BlsI	GCNGC	8 cut(s)	64, 120, 262, 337, 572, 622, 738, 964
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	1056
BmgT120I	GGNCC	4 cut(s)	94, 508, 1060, 1061
BmiI	GGNNCC	4 cut(s)	96, 271, 1061, 1062
BmsI	GCATC	5 cut(s)	206, 272, 790, 915, 1041
BpiI	GAAGAC	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	275, 453
BsaJI	CCNNGG	2 cut(s)	99, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	606, 1041
Bse3DI	GCAATG	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	99, 511
BseGI	GGATG	3 cut(s)	409, 610, 679
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	2 cut(s)	518, 701
BseNI	ACTGG	2 cut(s)	606, 1041
BseSI	GKGCMC	2 cut(s)	895, 1064
BseXI	GCAGC	8 cut(s)	74, 105, 247, 322, 582, 632, 748, 949
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	509, 1062
BsiHKAI	GWGCWC	2 cut(s)	895, 1006
BsiHKCI	CYCGRG	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	509, 1062
BsoBI	CYCGRG	1 cut(s)	1056
Bsp120I	GGGCCC	1 cut(s)	1060
Bsp1286I	GDGCHC	3 cut(s)	895, 1006, 1064
Bsp143I	GATC	5 cut(s)	237, 330, 464, 580, 637
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	509, 1062
BspCNI	CTCAG	2 cut(s)	519, 700
BspLI	GGNNCC	4 cut(s)	96, 271, 1061, 1062
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	606, 1041
BssECI	CCNNGG	2 cut(s)	99, 511
BssMI	GATC	5 cut(s)	237, 330, 464, 580, 637
BssT1I	CCWWGG	2 cut(s)	99, 511
Bst4CI	ACNGT	2 cut(s)	661, 751
Bst6I	CTCTTC	3 cut(s)	185, 234, 849
BstC8I	GCNNGC	2 cut(s)	594, 982
BstDEI	CTNAG	2 cut(s)	527, 687
BstF5I	GGATG	3 cut(s)	409, 610, 679
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	5 cut(s)	240, 333, 467, 583, 640
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	5 cut(s)	237, 330, 464, 580, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 620
BstNSI	RCATGY	1 cut(s)	618
BstSFI	CTRYAG	2 cut(s)	119, 1065
BstSLI	GKGCMC	2 cut(s)	895, 1064
BstV1I	GCAGC	8 cut(s)	74, 105, 247, 322, 582, 632, 748, 949
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	509, 1062
BtgZI	GCGATG	1 cut(s)	1011
BtsCI	GGATG	3 cut(s)	409, 610, 679
BtsI	GCAGTG	1 cut(s)	964
BtsIMutI	CAGTG	3 cut(s)	12, 695, 964
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	2 cut(s)	594, 982
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	4 cut(s)	94, 508, 1060, 1061
Csp6I	GTAC	1 cut(s)	810
CviAII	CATG	3 cut(s)	615, 853, 1052
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	2 cut(s)	527, 687
DpnI	GATC	5 cut(s)	239, 332, 466, 582, 639
DpnII	GATC	5 cut(s)	237, 330, 464, 580, 637
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	3 cut(s)	185, 234, 849
EarI	CTCTTC	3 cut(s)	185, 234, 849
Eco130I	CCWWGG	2 cut(s)	99, 511
Eco24I	GRGCYC	1 cut(s)	1064
Eco32I	GATATC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	1056
EcoO109I	RGGNCCY	2 cut(s)	1060, 1061
EcoRI	GAATTC	1 cut(s)	1047
EcoRV	GATATC	1 cut(s)	540
EcoT14I	CCWWGG	2 cut(s)	99, 511
EcoT38I	GRGCYC	1 cut(s)	1064
ErhI	CCWWGG	2 cut(s)	99, 511
FaeI	CATG	3 cut(s)	618, 856, 1055
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	614, 852, 1051
Fnu4HI	GCNGC	8 cut(s)	63, 119, 261, 336, 571, 621, 737, 963
FokI	GGATG	3 cut(s)	416, 617, 686
FriOI	GRGCYC	1 cut(s)	1064
Fsp4HI	GCNGC	8 cut(s)	63, 119, 261, 336, 571, 621, 737, 963
FspBI	CTAG	2 cut(s)	141, 884
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	8 cut(s)	63, 119, 261, 336, 571, 621, 737, 963
HaeIII	GGCC	2 cut(s)	509, 1062
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	618, 856, 1055
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	153, 286, 856
HpaI	GTTAAC	1 cut(s)	1086
HphI	GGTGA	3 cut(s)	340, 493, 502
Hpy166II	GTNNAC	3 cut(s)	547, 893, 1086
Hpy188I	TCNGA	2 cut(s)	642, 861
Hpy188III	TCNNGA	2 cut(s)	470, 498
Hpy8I	GTNNAC	3 cut(s)	547, 893, 1086
HpyAV	CCTTC	3 cut(s)	283, 604, 1070
HpyCH4III	ACNGT	2 cut(s)	661, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 620
HpyF3I	CTNAG	2 cut(s)	527, 687
Hsp92II	CATG	3 cut(s)	618, 856, 1055
HspAI	GCGC	1 cut(s)	416
KspAI	GTTAAC	1 cut(s)	1086
Kzo9I	GATC	5 cut(s)	237, 330, 464, 580, 637
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	8 cut(s)	74, 105, 247, 322, 582, 632, 748, 949
LweI	GCATC	5 cut(s)	206, 272, 790, 915, 1041
MaeI	CTAG	2 cut(s)	141, 884
MaeIII	GTNAC	4 cut(s)	490, 676, 697, 707
MalI	GATC	5 cut(s)	239, 332, 466, 582, 639
MboI	GATC	5 cut(s)	237, 330, 464, 580, 637
MboII	GAAGA	6 cut(s)	172, 221, 358, 420, 836, 929
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	3 cut(s)	895, 1006, 1064
MluCI	AATT	5 cut(s)	87, 350, 411, 863, 1047
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	6 cut(s)	217, 298, 472, 664, 823, 1018
MseI	TTAA	6 cut(s)	39, 372, 453, 654, 770, 1085
MspA1I	CMGCKG	3 cut(s)	596, 623, 739
MunI	CAATTG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	392, 620
NdeII	GATC	5 cut(s)	237, 330, 464, 580, 637
NlaIII	CATG	3 cut(s)	618, 856, 1055
NlaIV	GGNNCC	4 cut(s)	96, 271, 1061, 1062
NmuCI	GTSAC	3 cut(s)	490, 676, 707
NspI	RCATGY	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	153, 286, 856
PkrI	GCNGC	8 cut(s)	64, 120, 262, 337, 572, 622, 738, 964
PspN4I	GGNNCC	4 cut(s)	96, 271, 1061, 1062
PspOMI	GGGCCC	1 cut(s)	1060
PspPI	GGNCC	4 cut(s)	94, 508, 1060, 1061
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	3 cut(s)	596, 623, 739
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	6 cut(s)	39, 372, 453, 654, 770, 1085
SatI	GCNGC	8 cut(s)	63, 119, 261, 336, 571, 621, 737, 963
Sau3AI	GATC	5 cut(s)	237, 330, 464, 580, 637
Sau96I	GGNCC	4 cut(s)	94, 508, 1060, 1061
SduI	GDGCHC	3 cut(s)	895, 1006, 1064
SfaNI	GCATC	5 cut(s)	206, 272, 790, 915, 1041
SfcI	CTRYAG	2 cut(s)	119, 1065
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	290, 468
SmoI	CTYRAG	2 cut(s)	290, 468
Sse9I	AATT	5 cut(s)	87, 350, 411, 863, 1047
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	141, 884
StyI	CCWWGG	2 cut(s)	99, 511
TaaI	ACNGT	2 cut(s)	661, 751
TaqI	TCGA	4 cut(s)	151, 232, 1006, 1045
TasI	AATT	5 cut(s)	87, 350, 411, 863, 1047
TfiI	GAWTC	3 cut(s)	153, 286, 856
Tru1I	TTAA	6 cut(s)	39, 372, 453, 654, 770, 1085
Tru9I	TTAA	6 cut(s)	39, 372, 453, 654, 770, 1085
TscAI	CASTG	3 cut(s)	19, 695, 964
TseFI	GTSAC	3 cut(s)	490, 676, 707
TseI	GCWGC	8 cut(s)	62, 118, 260, 335, 570, 620, 736, 962
Tsp45I	GTSAC	3 cut(s)	490, 676, 707
TspDTI	ATGAA	5 cut(s)	172, 807, 869, 887, 1040
TspRI	CASTG	3 cut(s)	19, 695, 964
VneI	GTGCAC	1 cut(s)	891
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	1047
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	2 cut(s)	141, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.