Rh6AG359500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000655
Physical Location & Seq
Forward (+)
55783991 .. 55785396
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG359500.1

Sequence Viewer

Length: 486 bp
ATGGCCCGGAAGTACAAGACCAAACCCAAGAAAAAGAGGAGCCCAATTCACAAGTTAAAGATAAGAGAAAAAGGGATTCGACTTCTGTTGGAAGAGAACCCTAAATCCATCCTCATCCATATCCAGCCAGCGGGGGGAACAGAAATTAGTTACATGGCTCCCCAGAACTCAGAGACACCGTTAACTCGAGCTCAACGCCAAGATGAGCTTCTGAACATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCATAAGTGATTATGAGTTTCCTGATCTTAGATGTAAGCGCTGGTTGAAGAATCTCTATCAGGCAATGCGTTTGTGTGGGAGAGATTATGGACGTCATGTAGCTGGTATTCAATTAGATTTACCGACATTTTGTGGTATTGAAGTGGACCTCGATGCAATGGAGAAGGCAATGGGGAATGGCCTTGGCAGATCGATCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.31

Weight (kDa)

9.71

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 379
AciI CCGC 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 1 cut(s) 14
AfeI AGCGCT 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 130, 134
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 3 cut(s) 331, 395, 425
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 3 cut(s) 191, 208, 386
AluI AGCT 3 cut(s) 191, 208, 386
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 186
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 2 cut(s) 3, 463
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 4, 430
AsuC2I CCSGG 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 2 cut(s) 44, 193
Bbv12I GWGCWC 1 cut(s) 193
BccI CCATC 2 cut(s) 116, 260
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 7, 225
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 4, 430
BmiI GGNNCC 2 cut(s) 41, 159
BmrFI CCNGG 2 cut(s) 7, 225
BmsI GCATC 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 134
Bse3DI GCAATG 3 cut(s) 354, 447, 459
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 108, 114
BseLI CCNNNNNNNGG 2 cut(s) 130, 134
BseMI GCAATG 3 cut(s) 354, 447, 459
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 52
BshFI GGCC 2 cut(s) 5, 465
BshVI ATCGAT 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 130, 134
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 5, 465
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 44, 193
Bsp143I GATC 3 cut(s) 307, 473, 477
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 5, 465
BspCNI CTCAG 1 cut(s) 182
BspDI ATCGAT 1 cut(s) 476
BspLI GGNNCC 2 cut(s) 41, 159
BsrDI GCAATG 3 cut(s) 354, 447, 459
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 3 cut(s) 307, 473, 477
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 169, 234, 311
BstF5I GGATG 2 cut(s) 108, 114
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 310, 476, 480
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 307, 473, 477
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 2 cut(s) 5, 223
Bsu15I ATCGAT 1 cut(s) 476
BsuRI GGCC 2 cut(s) 5, 465
BsuTUI ATCGAT 1 cut(s) 476
BtsCI GGATG 2 cut(s) 108, 114
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 4, 430
ClaI ATCGAT 1 cut(s) 476
Csp6I GTAC 1 cut(s) 13
CviAII CATG 3 cut(s) 154, 217, 380
CviJI RGCY 9 cut(s) 5, 42, 127, 158, 191, 208, 270, 386, 465
CviKI_1 RGCY 9 cut(s) 5, 42, 127, 158, 191, 208, 270, 386, 465
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 169, 234, 311
DpnI GATC 3 cut(s) 309, 475, 479
DpnII GATC 3 cut(s) 307, 473, 477
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 44, 193
Eco47I GGWCC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 466
EcoT38I GRGCYC 2 cut(s) 44, 193
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 3 cut(s) 157, 220, 383
FaiI YATR 7 cut(s) 120, 155, 218, 287, 297, 372, 381
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 3 cut(s) 153, 216, 379
FauI CCCGC 1 cut(s) 124
FokI GGATG 2 cut(s) 95, 101
FriOI GRGCYC 2 cut(s) 44, 193
FspBI CTAG 1 cut(s) 484
GlaI GCGC 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 2 cut(s) 5, 465
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 3 cut(s) 157, 220, 383
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 2 cut(s) 76, 334
HpaI GTTAAC 1 cut(s) 183
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 183, 430
Hpy188I TCNGA 3 cut(s) 172, 213, 274
Hpy188III TCNNGA 2 cut(s) 263, 305
Hpy8I GTNNAC 2 cut(s) 183, 430
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 440
HpyF3I CTNAG 3 cut(s) 169, 234, 311
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 3 cut(s) 157, 220, 383
HspAI GCGC 1 cut(s) 322
KspAI GTTAAC 1 cut(s) 183
Kzo9I GATC 3 cut(s) 307, 473, 477
LmnI GCTCC 2 cut(s) 39, 163
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 484
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 2 cut(s) 149, 280
MalI GATC 3 cut(s) 309, 475, 479
MboI GATC 3 cut(s) 307, 473, 477
MboII GAAGA 3 cut(s) 104, 236, 343
MhlI GDGCHC 2 cut(s) 44, 193
MluCI AATT 4 cut(s) 45, 144, 276, 395
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 3 cut(s) 30, 122, 443
MseI TTAA 2 cut(s) 56, 182
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 7, 225
MvaI CCWGG 1 cut(s) 225
NciI CCSGG 1 cut(s) 7
NdeII GATC 3 cut(s) 307, 473, 477
NlaIII CATG 3 cut(s) 157, 220, 383
NlaIV GGNNCC 2 cut(s) 41, 159
NspI RCATGY 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 186
PciI ACATGT 1 cut(s) 216
PfeI GAWTC 2 cut(s) 76, 334
PscI ACATGT 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 41, 159
PspPI GGNCC 2 cut(s) 4, 430
PspXI VCTCGAGB 1 cut(s) 186
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 56, 182
Sau3AI GATC 3 cut(s) 307, 473, 477
Sau96I GGNCC 2 cut(s) 4, 430
ScrFI CCNGG 2 cut(s) 7, 225
SduI GDGCHC 2 cut(s) 44, 193
SetI ASST 6 cut(s) 193, 210, 240, 379, 388, 435
SfaNI GCATC 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 4 cut(s) 45, 144, 276, 395
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 484
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 5, 223
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 79, 187, 435, 476
TasI AATT 4 cut(s) 45, 144, 276, 395
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 2 cut(s) 76, 334
Tru1I TTAA 2 cut(s) 56, 182
Tru9I TTAA 2 cut(s) 56, 182
TscAI CASTG 1 cut(s) 235
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 430
XceI RCATGY 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 1 cut(s) 484
ZraI GACGTC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.