Rh5CG391500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000655
Physical Location & Seq
Forward (+)
51543010 .. 51544524
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG391500.1

Sequence Viewer

Length: 345 bp
ATGGCTGCAGCTCCAGAATCCTTGTTCTCCATATTCACTGATTTATTTTTCGGAAAACCAAAACCGAAGAGTACTCCTAGTGAACGTCAGGATGAACTTGTGAAGAAATTTCCTGGGTCAAAAATTATTCGTCGTCCAAATCCAATGGAAGAAGCTGATGATTCACCTTACATTAAGTTTCCAAACCATTCTTGCGAGTATTATATGAGAAGACTATATGAGGCAGTGAGAATTTACGGGAAGGATCATTGTGAGATGGATTACGATAGTTGCGTATATCAACGAATAGTACGCCGGGACTGTGGTATTGAAATTCACCCTGCAGATGAGTTAAAGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.4

Weight (kDa)

5.94

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 3 cut(s) 107, 231, 312
AfaI GTAC 2 cut(s) 73, 291
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 11, 155
AluI AGCT 2 cut(s) 11, 155
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 3 cut(s) 107, 231, 312
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 156, 308
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 296
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 6, 321
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 114, 296
BmrFI CCNGG 2 cut(s) 114, 296
BpiI GAAGAC 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 244
BspMAI CTGCAG 2 cut(s) 10, 325
BspPI GGATC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 112, 294
BstSFI CTRYAG 2 cut(s) 6, 321
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 36, 231
Csp6I GTAC 2 cut(s) 72, 290
CviJI RGCY 3 cut(s) 5, 11, 155
CviKI_1 RGCY 3 cut(s) 5, 11, 155
CviQI GTAC 2 cut(s) 72, 290
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 112
FaiI YATR 6 cut(s) 32, 204, 206, 217, 219, 277
FaqI GGGAC 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 6, 9
HapII CCGG 1 cut(s) 295
HinfI GANTC 2 cut(s) 17, 161
HpaII CCGG 1 cut(s) 295
HphI GGTGA 2 cut(s) 156, 308
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 14, 89
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 8, 323
HpySE526I ACGT 1 cut(s) 85
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 27, 74, 99, 126, 308, 333
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 85
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 79, 115, 161, 222
MluCI AATT 4 cut(s) 107, 123, 231, 312
MnlI CCTC 1 cut(s) 214
MseI TTAA 2 cut(s) 174, 332
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 2 cut(s) 114, 296
MvaI CCWGG 1 cut(s) 114
NciI CCSGG 1 cut(s) 296
NdeII GATC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 2 cut(s) 17, 161
PkrI GCNGC 2 cut(s) 7, 10
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PstI CTGCAG 2 cut(s) 10, 325
RsaI GTAC 2 cut(s) 73, 291
RsaNI GTAC 2 cut(s) 72, 290
SaqAI TTAA 2 cut(s) 174, 332
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 114, 296
SetI ASST 4 cut(s) 13, 88, 157, 169
SfcI CTRYAG 2 cut(s) 6, 321
Sse9I AATT 4 cut(s) 107, 123, 231, 312
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 112, 294
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 88
TasI AATT 4 cut(s) 107, 123, 231, 312
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 17, 161
Tru1I TTAA 2 cut(s) 174, 332
Tru9I TTAA 2 cut(s) 174, 332
TscAI CASTG 2 cut(s) 43, 231
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 2 cut(s) 43, 231
XapI RAATTY 3 cut(s) 107, 231, 312
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.