Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Forward (+)

55918797 .. 55920504

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG373200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCTGGGGCTTTGTTAATTGTTATACTATCTGACTCCCAAAATTCTGAATTGGATTTATATATGTTCGTAGGGTTGAGATCGTCCGGAAGAATTGGAGGAAAATCCACCGGCCTAAGATCAGGTTCCAGATTAAGTACCAGGGAGCAACAAGATGACCTTCTGAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCAGAACCTGCCGCTGGCGCTGGCGCTGTGGCTTCAGACGAAATCATTTCGTTTGATACCTGCCGGAGTCTTTTGTATCACTACTATGATGTACGCGTATTTTACCTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

8.89

Isoelectric Point (pI)

85.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	223, 275
AccII	CGCG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	139, 300
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	301
AjnI	CCWGG	3 cut(s)	4, 140, 175
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	227, 233
BbvI	GCAGC	1 cut(s)	194
BciT130I	CCWGG	3 cut(s)	6, 142, 177
BfoI	RGCGCY	2 cut(s)	228, 234
BfuAI	ACCTGC	2 cut(s)	223, 275
BisI	GCNGC	2 cut(s)	183, 219
BlsI	GCNGC	2 cut(s)	184, 220
Bme1390I	CCNGG	3 cut(s)	6, 142, 177
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	3 cut(s)	6, 142, 177
BsaJI	CCNNGG	2 cut(s)	5, 141
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	3 cut(s)	6, 142, 177
BseDI	CCNNGG	2 cut(s)	5, 141
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	87, 111, 271
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	80, 119, 206
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	127
BspMI	ACCTGC	2 cut(s)	223, 275
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	5, 141
BssMI	GATC	3 cut(s)	80, 119, 206
Bst2UI	CCWGG	3 cut(s)	6, 142, 177
BstC8I	GCNNGC	2 cut(s)	223, 229
BstDEI	CTNAG	2 cut(s)	116, 164
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	2 cut(s)	228, 234
BstHHI	GCGC	2 cut(s)	227, 233
BstKTI	GATC	3 cut(s)	83, 122, 209
BstMBI	GATC	3 cut(s)	80, 119, 206
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	3 cut(s)	6, 142, 177
BstSCI	CCNGG	3 cut(s)	4, 140, 175
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	114
BveI	ACCTGC	2 cut(s)	223, 275
Cac8I	GCNNGC	2 cut(s)	223, 229
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	227, 233
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	138, 299
CviJI	RGCY	4 cut(s)	11, 114, 185, 239
CviKI_1	RGCY	4 cut(s)	11, 114, 185, 239
CviQI	GTAC	2 cut(s)	138, 299
DdeI	CTNAG	2 cut(s)	116, 164
DpnI	GATC	3 cut(s)	82, 121, 208
DpnII	GATC	3 cut(s)	80, 119, 206
Eco32I	GATATC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	4, 140, 175
EcoRV	GATATC	1 cut(s)	173
FaiI	YATR	7 cut(s)	26, 61, 63, 65, 189, 294, 319
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
Fnu4HI	GCNGC	2 cut(s)	183, 219
Fsp4HI	GCNGC	2 cut(s)	183, 219
GlaI	GCGC	2 cut(s)	226, 232
GluI	GCNGC	2 cut(s)	183, 219
HaeII	RGCGCY	2 cut(s)	228, 234
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	87, 111, 271
HhaI	GCGC	2 cut(s)	227, 233
Hin6I	GCGC	2 cut(s)	225, 231
HinP1I	GCGC	2 cut(s)	225, 231
HinfI	GANTC	2 cut(s)	35, 274
HpaII	CCGG	3 cut(s)	87, 111, 271
Hpy188I	TCNGA	5 cut(s)	34, 49, 165, 211, 244
Hpy188III	TCNNGA	2 cut(s)	87, 129
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	116, 164
HspAI	GCGC	2 cut(s)	225, 231
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	80, 119, 206
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	82, 121, 208
MboI	GATC	3 cut(s)	80, 119, 206
MboII	GAAGA	2 cut(s)	102, 216
MluCI	AATT	4 cut(s)	18, 43, 50, 93
MluI	ACGCGT	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	29, 283
MnlI	CCTC	2 cut(s)	92, 159
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	2 cut(s)	17, 134
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	3 cut(s)	87, 111, 271
MspR9I	CCNGG	3 cut(s)	6, 142, 177
MvaI	CCWGG	3 cut(s)	6, 142, 177
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	80, 119, 206
NlaIV	GGNNCC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	184, 220
PleI	GAGTC	2 cut(s)	29, 282
PpsI	GAGTC	2 cut(s)	29, 282
Psp6I	CCWGG	3 cut(s)	4, 140, 175
PspGI	CCWGG	3 cut(s)	4, 140, 175
PspN4I	GGNNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	139, 300
RsaNI	GTAC	2 cut(s)	138, 299
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	17, 134
SatI	GCNGC	2 cut(s)	183, 219
Sau3AI	GATC	3 cut(s)	80, 119, 206
SchI	GAGTC	2 cut(s)	29, 283
ScrFI	CCNGG	3 cut(s)	6, 142, 177
SetI	ASST	6 cut(s)	127, 162, 187, 217, 269, 315
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	18, 43, 50, 93
SsiI	CCGC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	4, 140, 175
TaqI	TCGA	1 cut(s)	202
TasI	AATT	4 cut(s)	18, 43, 50, 93
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	17, 134
Tru9I	TTAA	2 cut(s)	17, 134
TseI	GCWGC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.