FvH4_7g19420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000655
Physical Location & Seq
Forward (+)
16021434 .. 16023126
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19420.t1

Sequence Viewer

Length: 375 bp
ATGGGTCGCGCTTGTGGCCGTGCTCGGGGCGGCGGTTTCCGTTCCCGTTCAGGAGGGGCCAGTTCCTCCAAATCCACGACTCCCAAAAGTGCTAGGCAGCTTGTGGAGACATATCCTGGCGCCGCGGCTGTAATTGTTAGTGGTAAAAGGCCTTACTATGGACGAGGAAGTTCTGATTCTGATGATGACCCGTATCCGTCTCTTGCATGCCAGGATCTGCTCCACTGCTACTATGATGCATTACGGTTGTGCGGGGCTGATCATGTTCAGTCTCTTAAGTACAAGGAAAGAATACGTGATTTTTGTGGTATTGAGGTATTTCCCGAAGGCGTCGCTAATGGTTCTGCTTCCACTAGTACTTCCGCCAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.18

Weight (kDa)

9.22

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 2 cut(s) 9, 125
AciI CCGC 6 cut(s) 30, 33, 123, 125, 252, 363
AclI AACGTT 1 cut(s) 370
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 16
AcyI GRCGYC 2 cut(s) 120, 330
AfaI GTAC 2 cut(s) 281, 358
AfiI CCNNNNNNNGG 2 cut(s) 25, 158
AflII CTTAAG 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 2 cut(s) 115, 210
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 3 cut(s) 101, 204, 276
AlwI GGATC 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 3 cut(s) 16, 57, 149
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 2 cut(s) 11, 122
AspS9I GGNCC 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 2 cut(s) 117, 212
BciVI GTATCC 1 cut(s) 204
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 101, 204, 276
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 93, 354
BfoI RGCGCY 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 204
BisI GCNGC 4 cut(s) 31, 98, 123, 126
BlsI GCNGC 4 cut(s) 32, 99, 124, 127
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 2 cut(s) 117, 212
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 58, 121
BmrFI CCNGG 2 cut(s) 117, 212
BmsI GCATC 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 296
BsaHI GRCGYC 2 cut(s) 120, 330
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 158
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 117, 212
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 25, 158
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 9, 125
BshFI GGCC 3 cut(s) 18, 59, 151
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 25, 158
BsmAI GTCTC 3 cut(s) 101, 204, 276
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 3 cut(s) 18, 59, 151
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 214, 259
BspACI CCGC 6 cut(s) 30, 33, 123, 125, 252, 363
BspANI GGCC 3 cut(s) 18, 59, 151
BspFNI CGCG 2 cut(s) 9, 125
BspLI GGNNCC 2 cut(s) 58, 121
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 119
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 214, 259
BssNI GRCGYC 2 cut(s) 120, 330
Bst2UI CCWGG 2 cut(s) 117, 212
Bst4CI ACNGT 1 cut(s) 246
BstACI GRCGYC 2 cut(s) 120, 330
BstAFI CTTAAG 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 2 cut(s) 9, 125
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 11, 122
BstKTI GATC 2 cut(s) 217, 262
BstMAI GTCTC 3 cut(s) 101, 204, 276
BstMBI GATC 2 cut(s) 214, 259
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 2 cut(s) 117, 212
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 115, 210
BstUI CGCG 2 cut(s) 9, 125
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 204
BsuRI GGCC 3 cut(s) 18, 59, 151
BtgI CCRYGG 1 cut(s) 123
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 2 cut(s) 11, 122
Cfr13I GGNCC 1 cut(s) 57
Cfr42I CCGCGG 1 cut(s) 126
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 280, 357
CviAII CATG 2 cut(s) 207, 263
CviJI RGCY 6 cut(s) 18, 59, 100, 128, 151, 257
CviKI_1 RGCY 6 cut(s) 18, 59, 100, 128, 151, 257
CviQI GTAC 2 cut(s) 280, 357
DinI GGCGCC 1 cut(s) 121
DpnI GATC 2 cut(s) 216, 261
DpnII GATC 2 cut(s) 214, 259
EaeI YGGCCR 1 cut(s) 16
EciI GGCGGA 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 115, 210
EcoT22I ATGCAT 1 cut(s) 241
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 210, 266
FaiI YATR 5 cut(s) 112, 159, 208, 234, 264
FatI CATG 2 cut(s) 206, 262
FauI CCCGC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 31, 98, 123, 126
Fsp4HI GCNGC 4 cut(s) 31, 98, 123, 126
FspBI CTAG 2 cut(s) 93, 354
GlaI GCGC 2 cut(s) 10, 121
GluI GCNGC 4 cut(s) 31, 98, 123, 126
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 3 cut(s) 18, 59, 151
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 11, 122
Hin1I GRCGYC 2 cut(s) 120, 330
Hin1II CATG 2 cut(s) 210, 266
Hin6I GCGC 2 cut(s) 9, 120
HinP1I GCGC 2 cut(s) 9, 120
HinfI GANTC 2 cut(s) 79, 176
Hpy188I TCNGA 2 cut(s) 175, 181
Hpy188III TCNNGA 2 cut(s) 51, 323
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 2 cut(s) 295, 370
HpyCH4V TGCA 2 cut(s) 206, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 295, 370
Hsp92I GRCGYC 2 cut(s) 120, 330
Hsp92II CATG 2 cut(s) 210, 266
HspAI GCGC 2 cut(s) 9, 120
KasI GGCGCC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 259
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 214, 259
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 36, 73, 102, 129, 197, 224
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 93, 354
MaeII ACGT 2 cut(s) 295, 370
MalI GATC 2 cut(s) 216, 261
MboI GATC 2 cut(s) 214, 259
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 4 cut(s) 47, 76, 158, 307
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 117, 212
MvaI CCWGG 2 cut(s) 117, 212
MvnI CGCG 2 cut(s) 9, 125
MwoI GCNNNNNNNGC 1 cut(s) 15
NarI GGCGCC 1 cut(s) 120
NdeII GATC 2 cut(s) 214, 259
NlaIII CATG 2 cut(s) 210, 266
NlaIV GGNNCC 2 cut(s) 58, 121
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PceI AGGCCT 1 cut(s) 151
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 4 cut(s) 32, 99, 124, 127
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 115, 210
PspGI CCWGG 2 cut(s) 115, 210
PspN4I GGNNCC 2 cut(s) 58, 121
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 281, 358
RsaNI GTAC 2 cut(s) 280, 357
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 4 cut(s) 31, 98, 123, 126
Sau3AI GATC 2 cut(s) 214, 259
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 117, 212
SduI GDGCHC 1 cut(s) 25
SetI ASST 4 cut(s) 102, 298, 318, 373
SfaNI GCATC 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 121
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 353
SphI GCATGC 1 cut(s) 210
Sse9I AATT 1 cut(s) 132
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 6 cut(s) 30, 33, 123, 125, 252, 363
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 2 cut(s) 93, 354
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 115, 210
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 2 cut(s) 298, 373
TasI AATT 1 cut(s) 132
TatI WGTACW 2 cut(s) 279, 356
TauI GCSGC 3 cut(s) 33, 125, 128
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 230
TseI GCWGC 1 cut(s) 97
TspGWI ACGGA 2 cut(s) 29, 186
TspRI CASTG 1 cut(s) 230
Vha464I CTTAAG 1 cut(s) 275
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 93, 354
ZrmI AGTACT 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.