Rroxscaffold_7G00173070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000655
Physical Location & Seq
Forward (+)
13196131 .. 13197485
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173070.1

Sequence Viewer

Length: 411 bp
ATGGCTGGTGGTGCCCGTTGCGGTGTCCGTTCAGGCGGAGGTTTGAGATCGTCCGGAAGAATTGGCGGAAAATCCACCGGCCTAAGGTCAGGTCCCAGATTAAGTACCAGTGAACAACAAGATGAAATTGTGAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCGGAACCTACCGCTGGCGCTGGCGCTGGCGCTGTGGCTTCTGACGAAAATTATCCGTTTGATTACTGCCAGAGGCTTCTGGATTACTACTATGATATAACACGCTTGTGTGGGAGCGACTATCCCGATAGTGTATTATATCGCAACGCTATACTTGATATTTGTGGTATTCAGGTGTCACCGGATGAGTTAGACAAGAAGGCCTCTACTTCCACCAACGCAGCAGCTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.53

Weight (kDa)

8.37

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 4 cut(s) 21, 36, 66, 186
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 84, 188
AjnI CCWGG 1 cut(s) 142
AleI CACNNNNGTG 1 cut(s) 280
AluBI AGCT 2 cut(s) 152, 401
AluI AGCT 2 cut(s) 152, 401
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 79, 375
ApeKI GCWGC 3 cut(s) 149, 395, 398
AspLEI GCGC 3 cut(s) 194, 200, 206
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 345
AvaII GGWCC 1 cut(s) 92
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 161, 407
BciT130I CCWGG 1 cut(s) 144
BfoI RGCGCY 3 cut(s) 195, 201, 207
BisI GCNGC 3 cut(s) 150, 396, 399
BlsI GCNGC 3 cut(s) 151, 397, 400
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 13, 94, 180
BmrFI CCNGG 1 cut(s) 144
BsaWI WCCGGW 2 cut(s) 53, 355
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 188
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 108
Bse21I CCTNAGG 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 84, 188
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 2 cut(s) 161, 407
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 81, 377
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 3 cut(s) 54, 78, 356
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 84, 188
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 81, 377
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 47, 173
BspACI CCGC 4 cut(s) 21, 36, 66, 186
BspANI GGCC 2 cut(s) 81, 377
BspEI TCCGGA 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 13, 94, 180
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 2 cut(s) 47, 173
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 190, 196, 202
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 364
BstH2I RGCGCY 3 cut(s) 195, 201, 207
BstHHI GCGC 3 cut(s) 194, 200, 206
BstKTI GATC 2 cut(s) 50, 176
BstMBI GATC 2 cut(s) 47, 173
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 161, 407
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 81, 377
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 3 cut(s) 190, 196, 202
CfoI GCGC 3 cut(s) 194, 200, 206
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 7 cut(s) 5, 81, 152, 212, 250, 377, 401
CviKI_1 RGCY 7 cut(s) 5, 81, 152, 212, 250, 377, 401
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 49, 175
DpnII GATC 2 cut(s) 47, 173
EciI GGCGGA 2 cut(s) 51, 81
Eco147I AGGCCT 1 cut(s) 377
Eco32I GATATC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 140
FaiI YATR 5 cut(s) 156, 267, 272, 313, 326
FaqI GGGAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 150, 396, 399
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 150, 396, 399
GlaI GCGC 3 cut(s) 193, 199, 205
GluI GCNGC 3 cut(s) 150, 396, 399
HaeII RGCGCY 3 cut(s) 195, 201, 207
HaeIII GGCC 2 cut(s) 81, 377
HapII CCGG 3 cut(s) 54, 78, 356
HhaI GCGC 3 cut(s) 194, 200, 206
Hin6I GCGC 3 cut(s) 192, 198, 204
HinP1I GCGC 3 cut(s) 192, 198, 204
HpaII CCGG 3 cut(s) 54, 78, 356
HphI GGTGA 1 cut(s) 345
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 178, 217
Hpy188III TCNNGA 3 cut(s) 54, 254, 299
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 367
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 83
HspAI GCGC 3 cut(s) 192, 198, 204
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 2 cut(s) 47, 173
LmnI GCTCC 1 cut(s) 288
Lsp1109I GCAGC 2 cut(s) 161, 407
MaeIII GTNAC 2 cut(s) 160, 351
MalI GATC 2 cut(s) 49, 175
MboI GATC 2 cut(s) 47, 173
MboII GAAGA 2 cut(s) 69, 183
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 60, 126, 223
MnlI CCTC 4 cut(s) 32, 126, 240, 388
MroI TCCGGA 1 cut(s) 53
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 3 cut(s) 54, 78, 356
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 47, 173
NlaIV GGNNCC 3 cut(s) 13, 94, 180
NmuCI GTSAC 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 280
PceI AGGCCT 1 cut(s) 377
PkrI GCNGC 3 cut(s) 151, 397, 400
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 13, 94, 180
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 150, 396, 399
Sau3AI GATC 2 cut(s) 47, 173
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 43, 89, 94, 154, 184, 351, 403
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 280
Sse9I AATT 3 cut(s) 60, 126, 223
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 4 cut(s) 21, 36, 66, 186
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 169
TasI AATT 3 cut(s) 60, 126, 223
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 3 cut(s) 149, 395, 398
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 17, 219
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.