Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Forward (+)

13212264 .. 13219948

Gene Structure 7685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCGTAACTGATTATGAGTTTCCTGATCTTAGATGTAAGCTCTGGATGAAGAATCTGTATCAGGCAATGCGTTTATGTGGGAGGGATCATGGAAGTTTCGTAGCTGATTTCCAAGGAGGGTTAAAGGCATTCTGTGGCATTGAAGTGGACCTTGATGCGATGGAGAAGCCAATAGGGAATGGTTTTGCTACATCTCCCAGTTTTGTACTTCGAAACTTTGTTGATTCTGTACATTTGGAGTTGGTTCAGATTCATTCCGGATTGATGCTTGTGTTATTGTGCAGGGTTGTGATGCATGACTCGATTTTGATTAAGGGCTTATCTGAGGAGAGCAATGTATTGCCGAATCTGGGGTTGAGAGGATTTGATGTTATCGATGATGCAAAGACACAACTGGAGGCCTTGTGTCCTGGACTTGTTTCATGTACTGATATACTTGCATTGGCTGCTCGTTATTCTGTTGTCTTGGTAACCAGGCATCGAATTCCTCTCTATACCATTGCCGTCCAAAGCCAAAAATTTTCTGCTAAAGGCCTTGACGATCACGATCCTGTAATTCTGGATGGTAAGATTCTTTGTAAATACCCAAGAGGCTACGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

222

Amino Acids

24.51

Weight (kDa)

6.29

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	123 - 182	8.6e-15	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	323
AclWI	GGATC	2 cut(s)	159, 608
AcsI	RAATTY	2 cut(s)	549, 584
AfaI	GTAC	3 cut(s)	273, 297, 493
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	3 cut(s)	7, 475, 539
AluBI	AGCT	2 cut(s)	106, 170
AluI	AGCT	2 cut(s)	106, 170
AlwI	GGATC	2 cut(s)	159, 608
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	2 cut(s)	465, 598
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	2 cut(s)	549, 584
AspS9I	GGNCC	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	44, 220, 623
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	3 cut(s)	9, 477, 541
BfaI	CTAG	1 cut(s)	667
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme1390I	CCNGG	3 cut(s)	9, 477, 541
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	3 cut(s)	9, 477, 541
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	5 cut(s)	211, 321, 348, 436, 553
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	264, 465
Bse3DI	GCAATG	3 cut(s)	138, 406, 564
Bse8I	GATNNNNATC	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	9, 477, 541
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	117, 634
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	3 cut(s)	138, 406, 564
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	264, 465
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	499
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	467, 600
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	467, 600
Bsp119I	TTCGAA	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	91, 151, 607, 613
BspANI	GGCC	2 cut(s)	467, 600
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	323
BspPI	GGATC	2 cut(s)	159, 608
BspT104I	TTCGAA	1 cut(s)	277
BsrDI	GCAATG	3 cut(s)	138, 406, 564
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	264, 465
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	4 cut(s)	91, 151, 607, 613
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	3 cut(s)	9, 477, 541
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	18, 95, 390
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	117, 634
BstKTI	GATC	4 cut(s)	94, 154, 610, 616
BstMBI	GATC	4 cut(s)	91, 151, 607, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	3 cut(s)	9, 477, 541
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	7, 475, 539
BstV1I	GCAGC	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	467, 600
BsuTUI	ATCGAT	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	117, 634
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	3 cut(s)	272, 296, 492
CviAII	CATG	3 cut(s)	155, 362, 489
CviQI	GTAC	3 cut(s)	272, 296, 492
DdeI	CTNAG	3 cut(s)	18, 95, 390
DpnI	GATC	4 cut(s)	93, 153, 609, 615
DpnII	GATC	4 cut(s)	91, 151, 607, 613
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	2 cut(s)	467, 600
Eco47I	GGWCC	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	7, 475, 539
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	158, 365, 492
FaiI	YATR	7 cut(s)	81, 142, 156, 363, 490, 500, 561
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	3 cut(s)	154, 361, 488
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	2 cut(s)	124, 641
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	667
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	467, 600
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	3 cut(s)	158, 365, 492
HinfI	GANTC	6 cut(s)	118, 290, 316, 365, 412, 637
HpaII	CCGG	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	58, 315, 391
Hpy188III	TCNNGA	6 cut(s)	47, 89, 109, 324, 611, 626
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	348, 361, 449, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	18, 95, 390
Hsp92II	CATG	3 cut(s)	158, 365, 492
Kpn2I	TCCGGA	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	91, 151, 607, 613
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	5 cut(s)	211, 321, 348, 436, 553
MaeI	CTAG	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	64, 70, 535
MalI	GATC	4 cut(s)	93, 153, 609, 615
MboI	GATC	4 cut(s)	91, 151, 607, 613
MboII	GAAGA	2 cut(s)	20, 127
MluCI	AATT	4 cut(s)	60, 549, 584, 621
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	7 cut(s)	141, 176, 385, 419, 457, 564, 650
Mph1103I	ATGCAT	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	323
MseI	TTAA	2 cut(s)	188, 378
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	9, 477, 541
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	9, 477, 541
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	4 cut(s)	91, 151, 607, 613
NlaIII	CATG	3 cut(s)	158, 365, 492
NsiI	ATGCAT	1 cut(s)	363
NspV	TTCGAA	1 cut(s)	277
PceI	AGGCCT	2 cut(s)	467, 600
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	5 cut(s)	118, 290, 316, 412, 637
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	7, 475, 539
PspEI	GGTNACC	1 cut(s)	535
PspGI	CCWGG	3 cut(s)	7, 475, 539
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	3 cut(s)	273, 297, 493
RsaNI	GTAC	3 cut(s)	272, 296, 492
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	188, 378
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	4 cut(s)	91, 151, 607, 613
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	9, 477, 541
SetI	ASST	4 cut(s)	24, 108, 172, 219
SfaNI	GCATC	5 cut(s)	211, 321, 348, 436, 553
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	60, 549, 584, 621
SseBI	AGGCCT	2 cut(s)	467, 600
SspMI	CTAG	1 cut(s)	667
StuI	AGGCCT	2 cut(s)	467, 600
StyD4I	CCNGG	3 cut(s)	7, 475, 539
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	4 cut(s)	277, 368, 441, 547
TasI	AATT	4 cut(s)	60, 549, 584, 621
TatI	WGTACW	3 cut(s)	271, 295, 491
TfiI	GAWTC	5 cut(s)	118, 290, 316, 412, 637
Tru1I	TTAA	2 cut(s)	188, 378
Tru9I	TTAA	2 cut(s)	188, 378
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	128, 308, 477
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	549, 584
XspI	CTAG	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.