Rh5BG368200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
57739290 .. 57740732
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG368200.1

Sequence Viewer

Length: 321 bp
ATGGCTGCAGCTCCAGAATCCTTGTTCTCCATGTTCACTGATTTATTTTTCGAAAAACCAAAACCGAAGAGTACTCCTAGTGAACGTCAGGATGAACTTGTGAAGAATTTTCCTGGGTCAAAAATTATTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATTCACCTTACATTAAGTTTCCAAACCATGATTGCGTGTATTATATGACAAGACTATATGAGGCAGTGAGAATTTACGGGAAGGATGATTGGTACGAAAGAATAGTACGCCAGAACTGTGGTATTGAAATTCACCCTGCAGATGAGTTAAAGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.51

Weight (kDa)

5.23

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 106, 231, 288
AfaI GTAC 3 cut(s) 73, 254, 267
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 3 cut(s) 106, 231, 288
AsuHPI GGTGA 2 cut(s) 156, 284
AsuII TTCGAA 1 cut(s) 51
BbvI GCAGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 114
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 6, 297
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 97, 250
BseXI GCAGC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 10, 301
BspT104I TTCGAA 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 51
BstF5I GGATG 2 cut(s) 97, 250
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 6, 297
BstV1I GCAGC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 278
BtsCI GGATG 2 cut(s) 97, 250
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 36, 231
Csp6I GTAC 3 cut(s) 72, 253, 266
CviAII CATG 2 cut(s) 31, 188
CviJI RGCY 3 cut(s) 5, 11, 155
CviKI_1 RGCY 3 cut(s) 5, 11, 155
CviQI GTAC 3 cut(s) 72, 253, 266
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 34, 191
FaiI YATR 6 cut(s) 32, 189, 204, 206, 217, 219
FatI CATG 2 cut(s) 30, 187
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 104, 257
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 6, 9
Hin1II CATG 2 cut(s) 34, 191
HinfI GANTC 2 cut(s) 17, 161
HphI GGTGA 2 cut(s) 156, 284
Hpy166II GTNNAC 2 cut(s) 36, 83
Hpy188III TCNNGA 2 cut(s) 14, 89
Hpy8I GTNNAC 2 cut(s) 36, 83
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 8, 299
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 34, 191
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 27, 74, 99, 126, 284, 309
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 85
MboII GAAGA 3 cut(s) 79, 115, 161
MluCI AATT 4 cut(s) 106, 123, 231, 288
MnlI CCTC 1 cut(s) 214
MseI TTAA 2 cut(s) 174, 308
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NlaIII CATG 2 cut(s) 34, 191
NspV TTCGAA 1 cut(s) 51
PfeI GAWTC 2 cut(s) 17, 161
PkrI GCNGC 2 cut(s) 7, 10
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PstI CTGCAG 2 cut(s) 10, 301
RsaI GTAC 3 cut(s) 73, 254, 267
RsaNI GTAC 3 cut(s) 72, 253, 266
SaqAI TTAA 2 cut(s) 174, 308
SatI GCNGC 2 cut(s) 6, 9
ScaI AGTACT 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 13, 88, 169
SfcI CTRYAG 2 cut(s) 6, 297
SfuI TTCGAA 1 cut(s) 51
Sse9I AATT 4 cut(s) 106, 123, 231, 288
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 106, 123, 231, 288
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 17, 161
Tru1I TTAA 2 cut(s) 174, 308
Tru9I TTAA 2 cut(s) 174, 308
TscAI CASTG 2 cut(s) 43, 231
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 2 cut(s) 43, 231
XapI RAATTY 3 cut(s) 106, 231, 288
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.