FvH4_7g27060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000655
Physical Location & Seq
Reverse (-)
20309226 .. 20310611
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27060.t1

Sequence Viewer

Length: 348 bp
ATGGGTCTTGTGTTCTCCGGTCCAGTATTAACTCGGAGTCAGCGCCAAGATGAGCTTGTAAAGATGTGTCCAGATGGCATTGCTAAGGTTGTTCGTCGTCCAAAAACAAATCCAGACGGGTCTGAAATTGTTTGCATAACTGAATATGAGTTTCCCGAGTGGCAATGCGACTCTTTGATGAACAGATTCTGGGAGGCAATTAGAGAGGGTGAGACATGGAACGCAAAGTTCTACGGCAGTGTGCTTCCGGAACATTGTGGTATTGAAGTGGACATCAACAAGGCGATAGATAATCGTATCAAAAAAAACAAGGCGAAAGATAATAGCTCTGCTACTCCCCCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.03

Weight (kDa)

5.85

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 247
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 3 cut(s) 55, 327, 345
AluI AGCT 3 cut(s) 55, 327, 345
Alw26I GTCTC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 20
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 84
BsaWI WCCGGW 2 cut(s) 17, 247
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 2 cut(s) 78, 170
BseAI TCCGGA 1 cut(s) 247
BseMI GCAATG 2 cut(s) 78, 170
BseNI ACTGG 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 18, 248
BsmAI GTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 78, 170
BsrI ACTGG 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 189
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 20
CviAII CATG 1 cut(s) 216
CviJI RGCY 3 cut(s) 55, 327, 345
CviKI_1 RGCY 3 cut(s) 55, 327, 345
DdeI CTNAG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 155
FaeI CATG 1 cut(s) 219
FaiI YATR 3 cut(s) 137, 147, 217
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 2 cut(s) 18, 248
HhaI GCGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 3 cut(s) 37, 170, 186
HpaII CCGG 2 cut(s) 18, 248
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 36, 124
Hpy188III TCNNGA 4 cut(s) 71, 113, 155, 248
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 247
LpnPI CCDG 6 cut(s) 31, 36, 84, 126, 175, 261
MaeI CTAG 1 cut(s) 342
MluCI AATT 2 cut(s) 126, 198
MlyI GAGTC 2 cut(s) 46, 164
MnlI CCTC 2 cut(s) 187, 199
MroI TCCGGA 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 29
MspI CCGG 2 cut(s) 18, 248
NlaIII CATG 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 186
PleI GAGTC 2 cut(s) 45, 164
PpsI GAGTC 2 cut(s) 45, 164
PspPI GGNCC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 46, 164
SetI ASST 4 cut(s) 57, 90, 329, 347
SinI GGWCC 1 cut(s) 20
Sse9I AATT 2 cut(s) 126, 198
SspMI CTAG 1 cut(s) 342
TasI AATT 2 cut(s) 126, 198
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.