Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Reverse (-)

55941458 .. 55943000

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTCTTTCCGGTTCTTCTAGTCGCCGTTCCGAAGAATCATCATCCTCTTCCTCCCGACAACCAAAGAGTCTTACTCAAGTTCAAGACGAGCTTGTCAAGAAATATGCTTCCGGTGCTGTGGTTATTCTGACCAGAACTCCTCCGAGATCAGCTGATGACTTTAGGCGGGAGTATCTTCTGCAGAAATACCCTACTTGTGAGGAATGGATTCAACAGTTCTACAAGTTACAACGCCTCTGTAGGAGCAATTGCCCTGAATGGTCCAAGATAAGGATTGAGACCAGTGGCCTTGAGGTTTGCCCTGAAAAGTTACTACTTGACTCCCGTCAGCTAGCTAATGACTCAAATCTAGTTGCGTCCGGATGTGAAGATCCCCAACAGAGGCTTGGTTTATTTGCAGTTGATCTGTTGGAAGATTTGCATCTTTCCTCCCTTTATAGCTTGCATTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

6.14

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	273, 384
AgsI	TTSAA	2 cut(s)	86, 215
AluBI	AGCT	5 cut(s)	94, 155, 334, 338, 444
AluI	AGCT	5 cut(s)	94, 155, 334, 338, 444
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	264
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	21, 335, 353
BfmI	CTRYAG	2 cut(s)	182, 241
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	433
BmtI	GCTAGC	1 cut(s)	338
BoxI	GACNNNNGTC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpuEI	CTTGAG	2 cut(s)	63, 314
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	275
BsaWI	WCCGGW	3 cut(s)	11, 113, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 384
Bse1I	ACTGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	362
BseGI	GGATG	2 cut(s)	44, 371
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	273, 384
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	12, 114, 363
BslI	CCNNNNNNNGG	2 cut(s)	273, 384
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	149, 373, 406
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	362
BspMAI	CTGCAG	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	149, 373, 406
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	336, 446
BstF5I	GGATG	2 cut(s)	44, 371
BstKTI	GATC	3 cut(s)	152, 376, 409
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	149, 373, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstPAI	GACNNNNGTC	1 cut(s)	327
BstSFI	CTRYAG	2 cut(s)	182, 241
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	44, 371
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	336, 446
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	348
CviJI	RGCY	7 cut(s)	94, 155, 291, 334, 338, 388, 444
CviKI_1	RGCY	7 cut(s)	94, 155, 291, 334, 338, 388, 444
DpnI	GATC	3 cut(s)	151, 375, 408
DpnII	GATC	3 cut(s)	149, 373, 406
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	264
FaiI	YATR	2 cut(s)	108, 441
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FauI	CCCGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	31, 378
FspBI	CTAG	3 cut(s)	21, 335, 353
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	3 cut(s)	12, 114, 363
HgaI	GACGC	1 cut(s)	348
HinfI	GANTC	5 cut(s)	38, 70, 211, 323, 344
HpaII	CCGG	3 cut(s)	12, 114, 363
Hpy188I	TCNGA	3 cut(s)	34, 132, 147
Hpy188III	TCNNGA	4 cut(s)	57, 86, 100, 363
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	184, 401, 424, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	149, 373, 406
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	7 cut(s)	25, 127, 148, 270, 298, 318, 376
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	3 cut(s)	21, 335, 353
MaeIII	GTNAC	2 cut(s)	228, 312
MalI	GATC	3 cut(s)	151, 375, 408
MboI	GATC	3 cut(s)	149, 373, 406
MboII	GAAGA	6 cut(s)	9, 42, 47, 170, 383, 428
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	2 cut(s)	250, 454
MlyI	GAGTC	3 cut(s)	79, 317, 338
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	8 cut(s)	58, 64, 153, 196, 248, 289, 378, 442
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	12, 114, 363
MunI	CAATTG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	3 cut(s)	149, 373, 406
NheI	GCTAGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	38, 211
PleI	GAGTC	3 cut(s)	78, 317, 338
PpsI	GAGTC	3 cut(s)	78, 317, 338
PshAI	GACNNNNGTC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	149, 373, 406
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	3 cut(s)	79, 317, 338
SetI	ASST	6 cut(s)	96, 157, 300, 336, 340, 446
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	2 cut(s)	182, 241
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	78, 293
SmoI	CTYRAG	2 cut(s)	78, 293
Sse9I	AATT	2 cut(s)	250, 454
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	3 cut(s)	21, 335, 353
TaaI	ACNGT	1 cut(s)	219
TasI	AATT	2 cut(s)	250, 454
TfiI	GAWTC	2 cut(s)	38, 211
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	292
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	3 cut(s)	21, 335, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.